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Conserved domains on  [gi|1533836132|gb|RSC59003|]
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hypothetical protein EGW07_15780 [Citrobacter amalonaticus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbhQ super family cl12637
Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function ...
 1-132 1.60e-50

Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.


The actual alignment was detected with superfamily member pfam11076:

Pssm-ID: 431643  Cd Length: 132  Bit Score: 157.32  E-value: 1.60e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1533836132   1 MRWQQRVRVATGLSCWQIMLHLLVVALLVVGWKSGTLVHVGLGLCVVYGVTVLLMLALQRHHEQRWREVADVLEELTTTW 80
Cdd:pfam11076   1 MKWQQRVRVATGLSCWQIMLHLLVVALLVWGWMHKALVRVGLGLCVLYAVTLIAMLILQRHPEARWRELGDYLEELTTTW 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1533836132  81 YFGAALIALWLLSRVLQNNVLLALAGLAILAGPAVVSLLAKDKKLHDFASKH 132
Cdd:pfam11076  81 YFGAAMIALWLLSRVLHNNLLLALAGLVILAGPALVSLLAKEKARRNLAPKH 132
 
Name Accession Description Interval E-value
YbhQ pfam11076
Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function ...
 1-132 1.60e-50

Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.


Pssm-ID: 431643  Cd Length: 132  Bit Score: 157.32  E-value: 1.60e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1533836132   1 MRWQQRVRVATGLSCWQIMLHLLVVALLVVGWKSGTLVHVGLGLCVVYGVTVLLMLALQRHHEQRWREVADVLEELTTTW 80
Cdd:pfam11076   1 MKWQQRVRVATGLSCWQIMLHLLVVALLVWGWMHKALVRVGLGLCVLYAVTLIAMLILQRHPEARWRELGDYLEELTTTW 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1533836132  81 YFGAALIALWLLSRVLQNNVLLALAGLAILAGPAVVSLLAKDKKLHDFASKH 132
Cdd:pfam11076  81 YFGAAMIALWLLSRVLHNNLLLALAGLVILAGPALVSLLAKEKARRNLAPKH 132
 
Name Accession Description Interval E-value
YbhQ pfam11076
Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function ...
 1-132 1.60e-50

Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.


Pssm-ID: 431643  Cd Length: 132  Bit Score: 157.32  E-value: 1.60e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1533836132   1 MRWQQRVRVATGLSCWQIMLHLLVVALLVVGWKSGTLVHVGLGLCVVYGVTVLLMLALQRHHEQRWREVADVLEELTTTW 80
Cdd:pfam11076   1 MKWQQRVRVATGLSCWQIMLHLLVVALLVWGWMHKALVRVGLGLCVLYAVTLIAMLILQRHPEARWRELGDYLEELTTTW 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1533836132  81 YFGAALIALWLLSRVLQNNVLLALAGLAILAGPAVVSLLAKDKKLHDFASKH 132
Cdd:pfam11076  81 YFGAAMIALWLLSRVLHNNLLLALAGLVILAGPALVSLLAKEKARRNLAPKH 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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