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Conserved domains on  [gi|1541669346|gb|RTO10989|]
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molecular chaperone [Enterobacter bugandensis]

Protein Classification

molecular chaperone( domain architecture ID 11459711)

molecular chaperone belonging to the periplasmic pilus chaperone family may be involved in fimbrial biogenesis; similar to Escherichia coli fimbrial chaperones, YraI, YqiH, YbgP and ElfD

CATH:  2.60.40.10
Gene Ontology:  GO:0061077|GO:0030288|GO:0043711
PubMed:  1683764|8670884
SCOP:  4002248|4007561

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
7-221 2.95e-84

P pilus assembly protein, chaperone PapD [Extracellular structures];


:

Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 250.29  E-value: 2.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   7 LTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGT----KAPFIVTPPLFRMDAGK 82
Cdd:COG3121     9 LLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGpdkaTAPFVVTPPLFRLEPGK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  83 SNALRIIYNGAPLPQDRESLFWINVKSIPSS--SREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIV 160
Cdd:COG3121    89 SQTVRIIRTGPPLPQDRESLFRLNVDEIPPKdaSEEGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTWSLVGNGLTV 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541669346 161 RNNSSYYISFAEVKIN--NKAWSE-IDMLAPKSSITFTLRNT-LLKNNATVQWKYINDYGGNSQL 221
Cdd:COG3121   169 TNPGPYYVTLSDLSLGagGKKLKKgLGMVLPGSTRRWPLPAGaSLAAGGKVTWATINDYGGAVPL 233
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
7-221 2.95e-84

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 250.29  E-value: 2.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   7 LTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGT----KAPFIVTPPLFRMDAGK 82
Cdd:COG3121     9 LLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGpdkaTAPFVVTPPLFRLEPGK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  83 SNALRIIYNGAPLPQDRESLFWINVKSIPSS--SREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIV 160
Cdd:COG3121    89 SQTVRIIRTGPPLPQDRESLFRLNVDEIPPKdaSEEGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTWSLVGNGLTV 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541669346 161 RNNSSYYISFAEVKIN--NKAWSE-IDMLAPKSSITFTLRNT-LLKNNATVQWKYINDYGGNSQL 221
Cdd:COG3121   169 TNPGPYYVTLSDLSLGagGKKLKKgLGMVLPGSTRRWPLPAGaSLAAGGKVTWATINDYGGAVPL 233
PRK09926 PRK09926
fimbrial chaperone;
8-218 2.14e-62

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 194.94  E-value: 2.14e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   8 TLLALLFGSCM-----SHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQ-GKDS---QGTKAPFIVTPPLFRM 78
Cdd:PRK09926    7 HTTALCFATCMafsssSIADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDtGDDNaepGSIKVPFTATPPVSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  79 DAGKSNALRIIYNGA-PLPQDRESLFWINVKSIP----SSSREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSV 153
Cdd:PRK09926   87 DPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPpkpdAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWSW 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541669346 154 KNNE----LIVRNNSSYYISFAEVKI--NNKAWsEID--MLAPKSSITFTLRN-TLLKNNATVQWKYINDYGGN 218
Cdd:PRK09926  167 AGSEgkasLRVTNPTPYYVSFSSGDLeaGGKRY-PVDskMIAPFSDESMKVKGlSGKASSGKVHFYAINDFGGA 239
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 23-138 5.58e-54

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 169.31  E-value: 5.58e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  23 VTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGT----KAPFIVTPPLFRMDAGKSNALRIIYNGAPLPQD 98
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTdekaKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1541669346  99 RESLFWINVKSIPS--SSREDINKLQIAVNTRIKLFYRPSNL 138
Cdd:pfam00345  81 RESLFWLNVLEIPPkdKPKGGQNGLQLALRSRIKLFYRPAGL 122
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
7-221 2.95e-84

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 250.29  E-value: 2.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   7 LTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGT----KAPFIVTPPLFRMDAGK 82
Cdd:COG3121     9 LLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGpdkaTAPFVVTPPLFRLEPGK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  83 SNALRIIYNGAPLPQDRESLFWINVKSIPSS--SREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIV 160
Cdd:COG3121    89 SQTVRIIRTGPPLPQDRESLFRLNVDEIPPKdaSEEGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTWSLVGNGLTV 168

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541669346 161 RNNSSYYISFAEVKIN--NKAWSE-IDMLAPKSSITFTLRNT-LLKNNATVQWKYINDYGGNSQL 221
Cdd:COG3121   169 TNPGPYYVTLSDLSLGagGKKLKKgLGMVLPGSTRRWPLPAGaSLAAGGKVTWATINDYGGAVPL 233
PRK09926 PRK09926
fimbrial chaperone;
8-218 2.14e-62

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 194.94  E-value: 2.14e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   8 TLLALLFGSCM-----SHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQ-GKDS---QGTKAPFIVTPPLFRM 78
Cdd:PRK09926    7 HTTALCFATCMafsssSIADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDtGDDNaepGSIKVPFTATPPVSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  79 DAGKSNALRIIYNGA-PLPQDRESLFWINVKSIP----SSSREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSV 153
Cdd:PRK09926   87 DPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPpkpdAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWSW 166

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541669346 154 KNNE----LIVRNNSSYYISFAEVKI--NNKAWsEID--MLAPKSSITFTLRN-TLLKNNATVQWKYINDYGGN 218
Cdd:PRK09926  167 AGSEgkasLRVTNPTPYYVSFSSGDLeaGGKRY-PVDskMIAPFSDESMKVKGlSGKASSGKVHFYAINDFGGA 239
PRK15295 PRK15295
fimbrial assembly chaperone;
4-216 7.86e-61

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 190.16  E-value: 7.86e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   4 KRY-LTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGT-KAPFIVTPPLFRMDAG 81
Cdd:PRK15295    1 KHIkKSVLVVLLTSHVAHASIVVGGTRLVFDGNNDESSINVENKDSKANLVQSWLSVVDPQVTnKQAFIITPPLFRLDAG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  82 KSNALRIIYNGAPLPQDRESLFWINVKSIPSSS-REDINKLQIAVNTRIKLFYRPSNLM-DEPTDISKNVQWSVKNNELI 159
Cdd:PRK15295   81 QKNSIRVIRSGAPLPADRESMYWLNIKGIPSIDdNASANRVEISINTQIKLIYRPPALTkSTPDSQSQQLKWQTAGDVIT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1541669346 160 VRNNSSYYISFAEVKINNKAWSEIDMLAPKSSITFTLRNTlLKNNATVQWKYINDYG 216
Cdd:PRK15295  161 VNNPTPYYMNFASVTLNSHEVKSATFVPPKSSASFKLGST-AAPHGTVTWRLISDYG 216
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 9-217 1.32e-54

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 174.58  E-value: 1.32e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   9 LLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGTK--APFIVTPPLFRMDAGKSNAL 86
Cdd:PRK15299   10 LCCLLCGSLAHAAGINIGTTRVIFHGDAKDASISISNSDNVPYLIQSWAQSISETGASgdAPFMVTPPLFRLNGGQKNVL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  87 RIIYNGAPLPQDRESLFWINVKSIPSSSREDI-NKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRNNSS 165
Cdd:PRK15299   90 RIIRTGGNLPEDRESLYWLDIKSIPSSNPDNKhNTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWSRQGRTLTVKNPTP 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1541669346 166 YYISFAEVKINNKAWSEIDMLAPKSSITFTLRNTLlknNATVQWKYINDYGG 217
Cdd:PRK15299  170 YYMNFATLSVGSQKVKAPRYVAPFGNAQYTLPAAA---SGPIAWSIINDFGG 218
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 23-138 5.58e-54

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 169.31  E-value: 5.58e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  23 VTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGT----KAPFIVTPPLFRMDAGKSNALRIIYNGAPLPQD 98
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTdekaKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1541669346  99 RESLFWINVKSIPS--SSREDINKLQIAVNTRIKLFYRPSNL 138
Cdd:pfam00345  81 RESLFWLNVLEIPPkdKPKGGQNGLQLALRSRIKLFYRPAGL 122
PRK15208 PRK15208
molecular chaperone LpfB;
2-226 6.05e-54

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 172.79  E-value: 6.05e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   2 LRKRYLTLLALLFGSCMSHAS-VTLSNTRVVYHADKKESNITVRN-NTASPFLVQSWVQgkDSQGTK-APFIVTPPLFRM 78
Cdd:PRK15208    1 MRLISFTALALALIAQNSFAGgVALSSTRVIYDGSKKEASLTVNNkSKTEEFLIQSWID--DANGNKkTPFIITPPLFKL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  79 DAGKSNALRIIYNGAPLPQDRESLFWINVKSIPSSSREDINK--LQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNN 156
Cdd:PRK15208   79 DPTKNNVLRIVNITNTLPQDRESVYWINVKAIPAKSEDAENKnvLQIAVRTRLKLFYRPAGLKGNSMDAWNKLRFTRAGN 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346 157 ELIVRNNSSYYISFAEVKINNKAWSEIDMLAPKSSITFTLRNTlLKNNATVQWKYINDYGGNSQLITQKI 226
Cdd:PRK15208  159 QIKVENPSAFNLTFNQFYANGRDIEKAGMVPAKGSLNIELPAG-TGKVSEVKYNIINDFGTAGEMLTKRV 227
PRK15195 PRK15195
molecular chaperone FimC;
4-216 5.37e-50

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 162.72  E-value: 5.37e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   4 KRYLTLLALLFGSCMSHAS--VTLSNTRVVYHADKKESNITVRN-NTASPFLVQSWVQGKDSQGTKApFIVTPPLFRMDA 80
Cdd:PRK15195    6 KLGMIIIFYLIISASVHAAggIALGATRVIYPADAKQTSLAIRNsHTNERYLVNSWIENSSGVKEKS-FIVTPPLFVSEP 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  81 GKSNALRIIYNGAPLPQDRESLFWINVKSIPS---SSREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNE 157
Cdd:PRK15195   85 KSENTLRIIYAGPPLAADRESLFWMNVKAIPSvdkNALEGRNVLQLAILSRIKLFVRPINLQELPEEAPDTLKFSRSGNH 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1541669346 158 LIVRNNSSYYISFAEVKINNKAWSEIdMLAPKSSITFTLRNTLlknNATVQWKYINDYG 216
Cdd:PRK15195  165 LKVHNPSPYYVTLVNLQVGSQKLGNA-MIAPKVNSQIPLPSGV---QGKLKFQTVNDYG 219
lfpB PRK15290
fimbrial chaperone;
9-226 8.45e-48

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 157.46  E-value: 8.45e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   9 LLALLFGS-CMSHASVTLSNTRVVYHADKKESNITVRNNTAS-PFLVQSWVQ--GKDSQgTKAPFIVTPPLFRMDAGKSN 84
Cdd:PRK15290   24 ILSVFLGQpALTYAGVVIGGTRVVYLSNNPDKSISVFSKEEKiPYLIQAWVDpfNKEDK-SKAPFTVIPPVSRLEPSQEK 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  85 ALRIIYN-GAPLPQDRESLFWINVKSIP-SSSREDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRN 162
Cdd:PRK15290  103 VLRIIHTkGVSLPDDRESVFWLNIKNIPpSASNKATNSLEIAVKTRIKLFWRPASIRLIPEDAAPKVKWRREGRNLIAEN 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541669346 163 NSSYYISFAEVKINNKAwSEIDMLAPKSSITFTLRNTLLKNNATvqWKYINDYGGNSQLITQKI 226
Cdd:PRK15290  183 PNPIHISVMDVIVDGHD-VPLNMIRPFETLTLPLPANSAGGQMT--WRFINDYGAVSDPIKMTL 243
PRK15211 PRK15211
fimbrial chaperone;
1-217 1.35e-43

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 146.12  E-value: 1.35e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   1 MLRKRYLTLLALLFGSCM-SHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQGTKAPFIVTPPLFRMD 79
Cdd:PRK15211    1 NKMMKWGLVSLLSLAVCGqAMAAFVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  80 AGKSNALRIIYNGAPLPQDRESLFWINVKSIPSSSREDI-NKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNEL 158
Cdd:PRK15211   81 PKEKQIIRIMKTDSALPKDRESLFWLNVQEIPPKPKASEgNVLAVALNTQVKLIYRPKALKEGRENAEKNLQIIHRGGET 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1541669346 159 IVRNNSSYYISFAEVKINN-------KAWSEIDMLAPKSSItfTLRNTLLKNNATVQwkYINDYGG 217
Cdd:PRK15211  161 YLKNPTPYYFAVTGVKLNGqpvklsdRVMNEIAQLAPFSEV--SLGKLSLNGTVTVQ--AVNDWGG 222
PRK15249 PRK15249
fimbrial chaperone;
5-216 8.42e-42

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 142.25  E-value: 8.42e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   5 RYLTL-LALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKD-----SQGTKAPFIVTPPLFRM 78
Cdd:PRK15249   11 YYLIVfLFLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDmntspENSSAMPFIATPPVFRI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  79 DAGKSNALRIIYNGA-PLPQDRESLFWINVKSIPSS---SREDINKLQIAVNTRIKLFYRPSNLmDEPTDISKNVQWSV- 153
Cdd:PRK15249   91 QPKAGQVVRVIYNNTkKLPQDRESVFWFNVLQVPPTnigSDSGQNKMLVMLRSRIKLFYRPDGL-GKPDNLAKKLQIKTv 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1541669346 154 ----KNNELIVRNNSSYYISFA--EVKINNKAW-SEIDMLAPKSSITFTL--RNTLLKNNATVQWKYINDYG 216
Cdd:PRK15249  170 nkgsGKSGIVIVNPQPWFASLSnlNVKVNGASYnLDADMIAPFSSQTWWLpgKRSLKSFSGTVTVTLVNDQG 241
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
19-216 6.46e-40

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 137.14  E-value: 6.46e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  19 SHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWV------QGKDSQGTKAPFIVTPPLFRMDAGKSNALRIIYNG 92
Cdd:PRK15192   20 AQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHIlpggrwPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYTG 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  93 APLPQDRESLFWINVKSIPSSSREdINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRNNSSYYISFAE 172
Cdd:PRK15192  100 APLPADRESLFTLSIAAIPSGKPE-ANRVQMAFRSALKLLYRPEGLAGNPQQAYRHLIWSLTPDGATVRNPTPYYVTLFL 178

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1541669346 173 VKINNKAWSEIDMLAPkssitFTLRNTLLKNNA---TVQWKYINDYG 216
Cdd:PRK15192  179 LRANERAQDNAGVVAP-----FATRQTDWCRHTvrcTVRWQSINDYG 220
PRK15224 PRK15224
pili assembly chaperone PapD;
22-220 8.43e-40

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 136.80  E-value: 8.43e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  22 SVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDsQGTKAPFIVTPPLFRMDAGKSNALRIIYNGAPLPQDRES 101
Cdd:PRK15224   29 SVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAAD-KSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRET 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346 102 LFWINVKSIPSSSREDINK-------LQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRNNSSYYISFAEVK 174
Cdd:PRK15224  108 LQWVCIKAVPPENEPSDTQakgatldLNLSINVCDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVT 187

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1541669346 175 INNKAWSEIDMLAPKSSITFTLRNTllkNNATVQWKYINDYGGNSQ 220
Cdd:PRK15224  188 VGGKPITGLEYIPPFADKTLNMPGS---AHGDIEWRVITDFGGESH 230
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 6-219 5.56e-37

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 129.11  E-value: 5.56e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   6 YLTLLALLFGSCMSHAS----VTLSNTRVVYHADKKESNITVRNNTASP-FLVQSWVQGKDSQGTkAPFIVTPPLFRMDA 80
Cdd:PRK15188    8 FLRLLLLLSAAGLSFAAqaggIALGATRVIYPQGSKQTSLPIINSSASNvFLIQSWVANADGSRS-TDFIITPPLFVIQP 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  81 GKSNALRIIYNGAPLPQDRESLFWINVKSIPSSSREDI--NKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNEL 158
Cdd:PRK15188   87 KKENILRIMYVGPSLPTDRESVFYLNSKAIPSVDKNKLtgNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCRNERGQL 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1541669346 159 IVRNNSSYYISFAEVKINNKAWSEIdMLAPKSSItftlrnTLLKNNATVQWKYINDYGGNS 219
Cdd:PRK15188  167 TITNPSPYYVSMVELYSAGKKLPNT-MVPPKGAI------TLPATPGQVSLRTVNDFGATT 220
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 7-217 1.19e-33

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 121.03  E-value: 1.19e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   7 LTLLALLFG-SCMSHASVTLSNTRVVYHADKKESNITVRNN-TASPFLVQSWVQGKDSQGTKApFIVTPPLFRMDAGKSN 84
Cdd:PRK15254    1 VILLALAAAwSQYSPAAVNVDRTRIIMDAPQKTVAITLNNDdKTTPFLAQSWVTDADGVRTDA-LMALPPLQRIDAGQKS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  85 ALRIIYNGA---PLPQDRESLFWINVKSIPSSSrEDINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKN-NELIV 160
Cdd:PRK15254   80 QVRITQVRGltdKLPQDRETLFWFNVRGVPPKP-EDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERNaGHLTL 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1541669346 161 RNNSSYYISFAEVKINN----KAWSEIDMLAPKSSItfTLRNTLLKNNATVQWKYINDYGG 217
Cdd:PRK15254  159 RNPTPYYITVAWLGADRshrlSGFREGVMVPPLGSL--PLKAVLPAETRTLWVGYIDDYGG 217
PRK15246 PRK15246
fimbrial assembly chaperone;
21-220 7.87e-32

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 115.83  E-value: 7.87e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  21 ASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDSQ----GTKAPFIVTPPLFRMDAGKSNALRIIYNG-APL 95
Cdd:PRK15246   10 AAVNIDRTRIIFASDDVAQSLTLSNDNTTPMLLQVWTDAGNIDaspdNSKTPLVALPPVFKMQPGELRTLRLLLSSrQQL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  96 PQDRESLFWINVKSIPSSSREDIN---KLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRNNSSYYISFAE 172
Cdd:PRK15246   90 ATDRESLFWLNIYQIPPVTQDIKNhprKLVLPLRLRLKILIRPTGLKAPTEAEEKKLRFIAKENTIRIVNPTSWYMSLTL 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1541669346 173 VKINNKAWSEIdMLAPKSSITFTLRNTlLKNNATVQWKYINDYGGNSQ 220
Cdd:PRK15246  170 TMDNKKSIGDI-MVAPKTALDVPLTRS-PTPGASINYAVINDSGNWRQ 215
PRK15285 PRK15285
fimbrial chaperone StfD;
1-222 3.39e-31

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 114.88  E-value: 3.39e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   1 MLRKRY---LTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRN-NTASPFLVQSWVQGKDSQGTKAPFIVTPPLF 76
Cdd:PRK15285    2 MPLKRYnlaAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNaNSKLPYLAQSWVEDEKGVKITSPLIVVPPVQ 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  77 RMDAGKSNALRIiyNGAP----LPQDRESLFWINVKSIPSSSrEDINKLQIAVNTRIKLFYRPSNLmdEPTDISKNVQWS 152
Cdd:PRK15285   82 RIEPSAIGQVKI--QGMPalasLPQDRETLFYYNVREIPPQS-DKPNTLQIALQTRIKVFYRPQAL--SKIDMQHPWQYK 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541669346 153 V----KNNELIVRNNSSYYI--SFAEVKINN---KAWSEIdMLAPKSSITFTLRNTLLKNNATVqwKYINDYGGNSQLI 222
Cdd:PRK15285  157 ItlqrQGNGYQVSNPTGYYVvlSNASNRMDGtpaRGFSPL-VIAPKSNVTLGGDASELGHSPVL--TYVNDYGARLPLI 232
PRK15218 PRK15218
fimbrial assembly chaperone;
5-216 9.26e-30

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 110.46  E-value: 9.26e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   5 RYLTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDS----QGTKAPFIVTPPLFRMDA 80
Cdd:PRK15218    2 KWMIALCLACAAMPAWSGIYIYGTRIIYPAQKKDITVQLMNDGKRSSLIQAWIDNGDTslppEKLQVPFIMTPPVIRVAA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  81 GKSNALRIIYNGAPLPQDRESLFWINVKSIPSSSRE--DINKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNEL 158
Cdd:PRK15218   82 NSGQQLKIKKLANNLPGDRESLFYLNVLDIPPNSDEnkDKNIIKFALQNRIKLIYRPPGVQKVDKATFSRLQLLRAPGSI 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1541669346 159 IVRNNSSYYISFAEVKINNKAWSEIDMLAPKSSITFTlrNTLLKNNATVqwKYINDYG 216
Cdd:PRK15218  162 SVKNNSANWITIPEIKAKSKVNKETLLLAPWSSQSIT--TTVVVNSYTV--TLIDDSG 215
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 4-222 9.66e-29

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 108.71  E-value: 9.66e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   4 KRYLTLLALLFGSCMSHASVTLSNTRVVYHADKKESNITVRNNTAS-PFLVQSWVQGKDSQGTKAPFIVTPPLFRMDAGK 82
Cdd:PRK15274    9 RQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATlPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  83 SNALRI--IYNGAPLPQDRESLFWINVKSIPSSSrEDINKLQIAVNTRIKLFYRPSNLMDEptdISKNVQWSVK------ 154
Cdd:PRK15274   89 DGQVKVqpLPAAASLPQDRESLFYFNVREIPPKS-DKPNTLQLALQTRIKFFYRPVAVARQ---VDKTHPWQTKltltyq 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1541669346 155 NNELIVRNNSSYY--ISFAEVKINNKAWSEIDML-APKSSITFTLRNTLLKNNATVqwKYINDYGGNSQLI 222
Cdd:PRK15274  165 GDGVIFDNPTPFYlvISNAGSKENETASGFKNLLiAPREKVTSPIKGASLGSSPVV--GYVDDYGGHRLLV 233
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 19-216 1.87e-28

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 107.44  E-value: 1.87e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  19 SHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQGKDS----QGTKAPFIVTPPLFRMDAGKSNALRIIYNGAP 94
Cdd:PRK15253   31 AHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTslppEKIQVPFMLTPPVARVAAESGQQIKIKKMPNS 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  95 LPQDRESLFWINVKSIPSSSREDINK--LQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRNNSSYYISFAE 172
Cdd:PRK15253  111 LPDNKESLFYLNVLDIPPNSQENAGKnvLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKTVIMKNDTANWITVTD 190

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1541669346 173 VKINN-KAWSEIDMLAPKSSitftlRNTLLKNNATVQWKY--INDYG 216
Cdd:PRK15253  191 VKAGNtKINDQTIMLPPLST-----QNINMKYASTSQYEVtiIDDNG 232
PRK11385 PRK11385
fimbrial chaperone;
7-219 4.18e-27

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 103.68  E-value: 4.18e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   7 LTLLALLFGSCMsHASVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQ------GKDSQGTKAPFIVTPPLFRMDA 80
Cdd:PRK11385   13 FAVLSLLVAGEL-QAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINrptrwaGGEASTVPAPLLAAPPLILLKP 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  81 GKSNALRIIYNGAP-LPQDRESLFWINVKSIPSSSREDiNKLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELI 159
Cdd:PRK11385   92 GTTGTLRLLRTESDiLPVDRETLFELSIASVPSGKVEN-QSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQ 170

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346 160 VRNNSSYYISFAEVKINNKAWSEIDMLAPKSSITFTLRNTLLKnnATVQWKYINDYGGNS 219
Cdd:PRK11385  171 LTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQAIAP--CHVAWRAINDYGGLS 228
PRK15233 PRK15233
fimbrial chaperone SefB;
25-181 3.00e-21

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 88.63  E-value: 3.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  25 LSNTRVVYHADKKESNITVRNNTASPFLVQSWVQgKDSQGTKAPFIVTPPLFRMDAGKSNALRIIYNGAPLPQDRESLFW 104
Cdd:PRK15233   44 LGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQVY-NDDKSSKAPFIVTPPILKVESNARTRLKVIPTSNLFNKNEESLYW 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346 105 INVKSIP------SSSREDIN---KLQIAVNTRIKLFYRPSNLMDEPTDISKNVQWSVKNNELIVRNNSSYYISFAEVKI 175
Cdd:PRK15233  123 LCVKGVPplndneSNNKNNITtnlNVNVVTNSCIKLIYRPKTIDLTTMEIADKLKLERKGNSIVIKNPTSSYVNIANIKS 202


                  ....*.
gi 1541669346 176 NNKAWS 181
Cdd:PRK15233  203 GNLSFN 208
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
 7-205 1.16e-16

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 75.85  E-value: 1.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346   7 LTLLALLFGSCMSHA-SVTLSNTRVVYHADKKESNITVRNNTASPFLVQSWVQG-KDSQGTKapFIVTPPLFRMDAGKSN 84
Cdd:PRK09918    9 FTALVLLSSSSAVHAaGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTLVDlPEDKSKL--LLVTPPVARVEPGQSQ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541669346  85 ALR-IIYNGAPLpqDRESLFWINVKSIPSSSRediNKLQIAVNTR--IKLFYRPSNLmDEPTDISKNVQWSVKNNELIVR 161
Cdd:PRK09918   87 QVRfILKSGSPL--NTEHLLRVSFEGVPPKPG---GKNKVVMPIRqdLPVLIQPAAL-PVVRDPWKLLVWSISGNNLVVS 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1541669346 162 NNSSYYISFAE-VKI--NNKAWSeidmLA-----PKSSITFTLRNTLLKNNA 205
Cdd:PRK09918  161 NPSPYVVRLGQqVILlpSGKVVA----LPkpyilPGESLTVAITNSKATDTK 208
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 160-220 1.50e-13

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 63.05  E-value: 1.50e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541669346 160 VRNNSSYYISFAEVKINNKAWS---EIDMLAPKSSITFTLrNTLLKNNATVQWKYINDYGGNSQ 220
Cdd:pfam02753   1 VKNPTPYYVTFSSLSLGGGGKElalDPGMVAPFSSQTFAG-LPAPAAGGTVSYTYINDYGGIVP 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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