|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
18-1160 |
0e+00 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 2036.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 18 MPLAQAANSPQQrQLLEQVRLGESTQREDLVRQSLYRLELIDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSS 97
Cdd:PRK11447 18 LPLAQAAPTAQQ-QLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 98 AYQSSRTTMLLSTPDGRQALQQARLLATTGHTQEAIAAYDKLFDGKPPSGDIATEYWNVVAKEPARRNLAINQLKKINAS 177
Cdd:PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 178 SPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGRSQASDMWYQQIKDQPVSSASVTALQQYLSVFSDGDNVTAART 257
Cdd:PRK11447 177 YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARS 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 258 QLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQS 337
Cdd:PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 338 DNRGKWDSLLKVNRYWLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDS 417
Cdd:PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 418 GNSNAVRGLANIYRAQSPEKATQFIQSLSASQRRSIDDIERSLTNEQLSAQAEQLESEGKYAQAAEIQRRRLALSPGDVW 497
Cdd:PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 498 ITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAALAHLNTLPRDKWNGNIQAQADRLQSNQV 577
Cdd:PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 578 LETANRLRDSGKEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAA 657
Cdd:PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 658 RAALAKLPAAQNgepLSINMQRRLAMAQAGLGDPAAAEKTFNAILPQAKSQPPSMESALVMRDAARFQAQNGQPQQALDT 737
Cdd:PRK11447 657 RAQLAKLPATAN---DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 738 WKDAMVSSGITTTRPTDNDSFTRLTRNDEKDDWLKRGVRSDAGDLYRQQDLNVTLQHDYWGSSGTGGYSDLKAHTTMLQV 817
Cdd:PRK11447 734 YKDAMVASGITPTRPQDNDTFTRLTRNDEKDDWLKRGVRSDAADLYRQQDLNVTLEHDYWGSSGTGGYSDLKAHTTMLQV 813
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 818 DAPLSDGRMFFRSDLVNMNAGSFDTD-NGAYDPTWGTCAETPCHGSTNQSANGASVAVGWQNKTWAWDIGTTPMGFDVVD 896
Cdd:PRK11447 814 DAPLSDGRAFFRTDRVNMDAGSFSTNaDGKYDDNWGTCTLQDCSGNRSQSDSGASVAVGWRNDRWSWDIGTTPMGFNVVD 893
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 897 VVGSLSYSNDLGPIGYTLNAHRRPISSSVLAFAGQKDP--NTDTKWGGVRATGGGVSMSYDKGEANGIWSSLSADSLTGK 974
Cdd:PRK11447 894 VVGGISYSGDIGPLGYTLNAHRRPISSSLLAFGGQKDPpsNTGTTWGGVRANGVGLSLSYDKGEANGVWASLSGDQLTGK 973
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 975 NVEDNWRVRWMTGYYYKLINQNNERLTVGVSNMLWHYDKDLSGYSLGQGGYYSPQEYVSFALPVNWRKRTENWSWELGGS 1054
Cdd:PRK11447 974 NVADNWRVRWMTGYYYKVINENNRRVTVGLNNMIWHYDKDLSGYSLGQGGYYSPQEYLSFAVPVMWRQRTENWSWELGGS 1053
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 1055 VSWSHSKTKDVMRYPLQGLIPDNEPGRYTDKgvMETGSSSSGTGYTARAIVERRVTSNWFVGLGVDIQEAKDYTPSHALL 1134
Cdd:PRK11447 1054 VSWSHSRTKTMPRYPLMNLIPTDYQEDAADQ--SNDGSSSQGFGYTARALVERRLTSNWFVGTGVDIQQAKDYTPSHALL 1131
|
1130 1140
....*....|....*....|....*.
gi 1541808936 1135 YVRYSAAGWQGDMDLPPEPLVPYADW 1160
Cdd:PRK11447 1132 YVRYSAAGWQGDLDLPPQPLTPYADW 1157
|
|
| BCSC_C |
pfam05420 |
Cellulose synthase operon protein C C-terminus (BCSC_C); This family contains the C-terminal ... |
806-1139 |
3.82e-152 |
|
Cellulose synthase operon protein C C-terminus (BCSC_C); This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.
Pssm-ID: 461647 Cd Length: 336 Bit Score: 458.23 E-value: 3.82e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 806 SDLKAHTTMLQVDAPLSDGRMFFRSDLVNMNAGSFDtDNGAYDPTWGTCAETPCHGSTNQSANGASVAVGWQNKTWAWDI 885
Cdd:pfam05420 1 SRLTEFTAPLEASFPAGDGRLFVRVTPVSLDAGTLA-PDGSALARFGTGALSAVRAAGSQTASGVGLALGWEGDNWKADI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 886 GTTPMGFDVVDVVGSLSYSNDLGPIGYTLNAHRRPISSSVLAFAGQKDPNTDTKWGGVRATGGGVSMSYDKGEAnGIWSS 965
Cdd:pfam05420 80 GTTPLGFDVSNVVGGVSWSGDLGDFGYTLTAERRPVTDSLLSYAGARDPVTGKTWGGVTANGGGLGLSYDDGGA-GVYAS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 966 LSADSLTGKNVEDNWRVRWMTGYYYKLINQNNERLTVGVSNMLWHYDKDLSGYSLGQGGYYSPQEYVSFALPVNWRKRTE 1045
Cdd:pfam05420 159 GGYHSLTGENVADNTRVEAMAGGYYRVINDPDRRLTVGLNLNYMHYDKNLSYFTYGQGGYFSPQRYVSISLPVEYAGRYG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 1046 NWSWELGGSVSWSHSKTKDVMRYP----LQGLIPDNEPGryTDKGVMETGSSSSGTGYTARAIVERRVTSNWFVGLGVDI 1121
Cdd:pfam05420 239 NWSYQLGGSVGYQSYREDAAPYFPtdpdLQAALASAVAG--TASNASYAGSSGTGFGYNLRAAGEYRLSPHWFVGGALSI 316
|
330
....*....|....*...
gi 1541808936 1122 QEAKDYTPSHALLYVRYS 1139
Cdd:pfam05420 317 DNSGDYAPSRGLLYLRYL 334
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
275-549 |
6.13e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 120.60 E-value: 6.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 275 AEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQsdnrgkwdsllkvnRYWL 354
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD--------------RAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 355 LIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQS 434
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 435 -PEKATQFIQSLSASQRRSIddieRSLTneqlsAQAEQLESEGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRS 513
Cdd:COG2956 159 dYDEAIEALEKALKLDPDCA----RALL-----LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
250 260 270
....*....|....*....|....*....|....*.
gi 1541808936 514 QADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAA 549
Cdd:COG2956 230 EALELLRKALELDPSDDLLLALADLLERKEGLEAAL 265
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
18-709 |
2.12e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 117.11 E-value: 2.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 18 MPLAQAANSPQQRQLLEQVRLGESTQRE-DLVRQSLYRLELIDPNNPDVIAARFRYLLRQGDTAGAQKELDRLkgmapds 96
Cdd:TIGR02917 113 LPGKTLLDDEGAAELLALRGLAYLGLGQlELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV------- 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 97 sayqssrttmLLSTPDGRQALQ-QARLLATTGHTQEAIAAYDKLFDGKPpsGDIATEYWNVVAK------EPARRNLaiN 169
Cdd:TIGR02917 186 ----------LTADPGNVDALLlKGDLLLSLGNIELALAAYRKAIALRP--NNIAVLLALATILieagefEEAEKHA--D 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 170 QLKKINASSPGNVPLQsslAQLLFQSGRRDEGFAVLQEMAKSN----NGRSQASDMWYQQIKDQpvssASVTALQQYLSV 245
Cdd:TIGR02917 252 ALLKKAPNSPLAHYLK---ALVDFQKKNYEDARETLQDALKSApeylPALLLAGASEYQLGNLE----QAYQYLNQILKY 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 246 FSDGDNV--TAARTQL-EAQQKQLA------------DPAFRAKAeGLAAVDAGQGSKAVTELQKAVSANHADSEAVGAL 310
Cdd:TIGR02917 325 APNSHQArrLLASIQLrLGRVDEAIatlspalgldpdDPAALSLL-GEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 311 GQAYSQKGDRARAVAQFEKAIALDPQSDN-----------RGKWDSLLKVNRYWLlIQQGDNA----------LKANNTA 369
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRadlllilsylrSGQFDKALAAAKKLE-KKQPDNAslhnllgaiyLGKGDLA 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 370 QAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQ-SPEKATQFI------ 442
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTgNEEEAVAWLekaael 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 443 ----------------------------QSLSASQRRS----------------IDDIERSLTN--EQLSAQAEQL---- 472
Cdd:TIGR02917 563 npqeiepalalaqyylgkgqlkkalailNEAADAAPDSpeawlmlgraqlaagdLNKAVSSFKKllALQPDSALALllla 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 473 ---ESEGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASG-LYLSGNDQDRA 548
Cdd:TIGR02917 643 dayAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGdLYLRQKDYPAA 722
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 549 ALAHLNTLPRDKWNGNiqaqadrlqsnqVLETANRLRDSGKEQEA----ETLLRQQPPSTRIDLTLADWAEQRGDHEAAK 624
Cdd:TIGR02917 723 IQAYRKALKRAPSSQN------------AIKLHRALLASGNTAEAvktlEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 625 TAYNTILQREPQNEDAILGLTEVYLaqgNKDAARA-ALAKLPAAQngEPLSINMQRRLAMAQAGLGDPAAAEKTFNAILP 703
Cdd:TIGR02917 791 KHYQTVVKKAPDNAVVLNNLAWLYL---ELKDPRAlEYAERALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865
|
....*.
gi 1541808936 704 QAKSQP 709
Cdd:TIGR02917 866 IAPEAA 871
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
356-634 |
6.01e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 102.89 E-value: 6.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 356 IQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIY-RAQS 434
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYlKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 435 PEKATQFIQSLSASQRRSIddiersltnEQLSAQAEQLESEGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQ 514
Cdd:COG2956 92 LDRAEELLEKLLELDPDDA---------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 515 ADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAALAHLNTLprdkwngnIQAQADRLQSNQVLETAnrLRDSGKEQEAE 594
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA--------LEQDPDYLPALPRLAEL--YEKLGDPEEAL 232
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1541808936 595 TLLR---QQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQRE 634
Cdd:COG2956 233 ELLRkalELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
20-664 |
3.32e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 106.71 E-value: 3.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 20 LAQAANSPQQRQLLEQVRLGESTQREDLVrqSLYRLELIDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAY 99
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIA--TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 100 QSSRTTMLLSTPDGRQA---LQQA-----------RLLATT----GHTQEAIAAYDKLFDGKPPSGDIateyWNVVA--- 158
Cdd:TIGR02917 400 RTQLGISKLSQGDPSEAiadLETAaqldpelgradLLLILSylrsGQFDKALAAAKKLEKKQPDNASL----HNLLGaiy 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 159 ---KEPARRNLAINQLKKINassPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGrsqasdmwyqqikdqpvssaS 235
Cdd:TIGR02917 476 lgkGDLAKAREAFEKALSIE---PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--------------------N 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 236 VTALQQYLSVFSDGDNVTAARTQLEAQQKqlADPAFRAKAEGLAA--VDAGQGSKAVTELQKAVSANHADSEAVGALGQA 313
Cdd:TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAE--LNPQEIEPALALAQyyLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 314 YSQKGDRARAVAQFEKAIALDPQSdnrgkwdsllkvnrywlliqqgdnalkanntaqaeryyqqarnidntdSYAVLGLG 393
Cdd:TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDS------------------------------------------------ALALLLLA 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 394 DAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIY-RAQSPEKATQFIQSLSAsqrrsiddiersltNEQLSAQAEQL 472
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLlAAKRTESAKKIAKSLQK--------------QHPKAALGFEL 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 473 ES-----EGKYAQAAEIQRRRLALSPGDVwITYRLSRDLYSAGQRSQADNLMRQLASQKPGD-PDQVYASGLYLSGNDQD 546
Cdd:TIGR02917 709 EGdlylrQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDaVLRTALAELYLAQKDYD 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 547 RAAlAHLNTLprdkwngNIQAQADRLQSNQVLETANRLRDSGKEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTA 626
Cdd:TIGR02917 788 KAI-KHYQTV-------VKKAPDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPL 859
|
650 660 670
....*....|....*....|....*....|....*...
gi 1541808936 627 YNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKL 664
Cdd:TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
167-490 |
7.62e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.80 E-value: 7.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 167 AINQLKKINASSPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGRSQAsdmwyqqikdqpvssasvtalqqylsvf 246
Cdd:COG2956 27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA---------------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 247 sdgdnvtaartqleaqQKQLADpafrakaeglAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQ 326
Cdd:COG2956 79 ----------------LLELAQ----------DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 327 FEKAIALDPQSDNrgkwdsllkvnrywLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAE 406
Cdd:COG2956 133 LERLLKLGPENAH--------------AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAI 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 407 RYYRQALRMDSGNSNAVRGLANIYRAQS-PEKATQFIQSLsasqrrsiddIERSLTNEQLSAQAEQLESEGKYAQAAEIQ 485
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKLGdPEEALELLRKA----------LELDPSDDLLLALADLLERKEGLEAALALL 268
|
....*
gi 1541808936 486 RRRLA 490
Cdd:COG2956 269 ERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
309-702 |
2.31e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 98.26 E-value: 2.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 309 ALGQAYSQKGDRARAVAQFEKAIALDPQSDNrgkwdsllkvnrywLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYA 388
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVE--------------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 389 VLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYraqspekatqfiqslsasqrrsiddiersltneqlsaq 468
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------------------------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 469 aeqlESEGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQAdnlmrqlasqkpgdpdqvyasglylsgndqdra 548
Cdd:COG2956 121 ----EQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA--------------------------------- 163
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 549 alahlntlprdkwngniqaqadrlqsnqvletanrlrdsgkEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYN 628
Cdd:COG2956 164 -----------------------------------------IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541808936 629 TILQREPQNEDAILGLTEVYLAQGNKDAARAALAKLPAAQNGEPLSINmqrrLAMAQAGLGDPAAAEKTFNAIL 702
Cdd:COG2956 203 RALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA----LADLLERKEGLEAALALLERQL 272
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
58-741 |
3.19e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 97.08 E-value: 3.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 58 IDPNNPDviaARF---RYLLRQGDTAGAQKELDRLKgmapdSSAYQSSRTTMLLstpdgrqalqqARLLATTGHTQEAIA 134
Cdd:TIGR02917 51 KDPNDAE---ARFllgKIYLALGDYAAAEKELRKAL-----SLGYPKNQVLPLL-----------ARAYLLQGKFQQVLD 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 135 AYDKLFDGKPPSGDIATEYWNVVAKEPARRNLAINQLKKINASSPGNVPLQSSLAQLLFQSGRRDEGFA----VLQEMAK 210
Cdd:TIGR02917 112 ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAlideVLTADPG 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 211 -------------SNNGRSQASDMWYQQIKDQPVSSASVTALQqyLSVFSDGDnVTAARTQLEAQQKQLADPAFRAKAEG 277
Cdd:TIGR02917 192 nvdalllkgdlllSLGNIELALAAYRKAIALRPNNIAVLLALA--TILIEAGE-FEEAEKHADALLKKAPNSPLAHYLKA 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 278 LAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDNrgkwdsllkVNRYWLLIQ 357
Cdd:TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQ---------ARRLLASIQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 358 qgdnaLKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQS-PE 436
Cdd:TIGR02917 340 -----LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGdPS 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 437 KAtqfiqslsasqrrsIDDIErsltneqlsaQAEQLESEGKYAqaaeiqRRRLALSPGDvwityrlsrdlysAGQRSQAD 516
Cdd:TIGR02917 415 EA--------------IADLE----------TAAQLDPELGRA------DLLLILSYLR-------------SGQFDKAL 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 517 NLMRQLASQKPGDPD-QVYASGLYLSGNDQDRAALAHlntlprdkwngniqAQADRLQSNQVLETANrlrdsgkeqeaet 595
Cdd:TIGR02917 452 AAAKKLEKKQPDNASlHNLLGAIYLGKGDLAKAREAF--------------EKALSIEPDFFPAAAN------------- 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 596 llrqqppstridltLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKLPAAQNGeplsi 675
Cdd:TIGR02917 505 --------------LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ----- 565
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1541808936 676 NMQRRLAMAQA--GLGDPAAAEKTFNAILPQAKSQPpsmeSALVMRdaARFQAQNGQPQQALDTWKDA 741
Cdd:TIGR02917 566 EIEPALALAQYylGKGQLKKALAILNEAADAAPDSP----EAWLML--GRAQLAAGDLNKAVSSFKKL 627
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
277-491 |
5.72e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.45 E-value: 5.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 277 GLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPqsdnrgkwdsllkvNRYWLLI 356
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP--------------DDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 357 QQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQS-P 435
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGrY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1541808936 436 EKATQFIQSLSASQRRSIDDIERSLTNEQLSAQAEQLESEGKYAQAAEIQRRRLAL 491
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
297-594 |
1.02e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.90 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 297 VSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSdnrgkwdsllkvnrYWLLIQQGDNALKANNTAQAERYYQ 376
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--------------AEALYNLGLAYLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 377 QARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQspekatqfiqslsasqrrsiddi 456
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL----------------------- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 457 ersltneqlsaqaeqleseGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYAS 536
Cdd:COG0457 124 -------------------GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALG 184
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1541808936 537 GLYLSGNDQDRAALAHLNTLPRDKWNGNIQAQADRLQSNQVLETANRLRDSGKEQEAE 594
Cdd:COG0457 185 EAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
288-432 |
1.03e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 288 KAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDNrgkwdsllkvnrywLLIQQGDNALKANN 367
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD--------------ALLDLAEALLAAGD 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 368 TAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRA 432
Cdd:COG4235 67 TEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
500-742 |
2.35e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.85 E-value: 2.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 500 YRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASG-LYLSGNDQDRAALAHLNTLPRDKWNGNIQAQ-ADRLQSNQV 577
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGnLYRRRGEYDRAIRIHQKLLERDPDRAEALLElAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 578 LETAnrlrdsgkEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAA 657
Cdd:COG2956 92 LDRA--------EELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 658 RAALAKlpaAQNGEPLSINMQRRLAMAQAGLGDPAAAEKTFNAILPQAKsqppsmESALVMRDAARFQAQNGQPQQALDT 737
Cdd:COG2956 164 IEALEK---ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP------DYLPALPRLAELYEKLGDPEEALEL 234
|
....*
gi 1541808936 738 WKDAM 742
Cdd:COG2956 235 LRKAL 239
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
255-493 |
1.14e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.88 E-value: 1.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 255 ARTQLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALD 334
Cdd:COG3914 63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 335 PqsdnrgkwdsllkvNRYWLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALR 414
Cdd:COG3914 143 P--------------DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541808936 415 MDSGNSNAVRGLANIYRAQSPEKATQFIQSLSASQRRSiddiERSLTNEQLSAQAEQLESEGKYAQAAEIQRRRLALSP 493
Cdd:COG3914 209 LDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARG----PSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAP 283
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
117-445 |
2.31e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.77 E-value: 2.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 117 LQQARLLATTGHTQEAIAAYDKLFdgkppsgdiateywnvvakeparrnlainqlkkinASSPGNVPLQSSLAQLLFQSG 196
Cdd:COG2956 46 LALGNLYRRRGEYDRAIRIHQKLL-----------------------------------ERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 197 RRDEGFAVLQEMAKsnngrsqasdmwyqqikdqpvssasvtalqqylsvfSDGDNVTAARTQLEAQQKQladpafrakae 276
Cdd:COG2956 91 LLDRAEELLEKLLE------------------------------------LDPDDAEALRLLAEIYEQE----------- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 277 glaavdaGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSdnrgkwdsllkvnrYWLLI 356
Cdd:COG2956 124 -------GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--------------ARALL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 357 QQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSnAVRGLANIY-RAQSP 435
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLeRKEGL 261
|
330
....*....|
gi 1541808936 436 EKATQFIQSL 445
Cdd:COG2956 262 EAALALLERQ 271
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
302-433 |
8.21e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.84 E-value: 8.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 302 ADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSdnrgkwdsllkvnrYWLLIQQGDNALKANNTAQAERYYQQARNI 381
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDN--------------PEAFALLGEILLQLGDLDEAIVLLHEALEL 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1541808936 382 DNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQ 433
Cdd:COG4783 68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
275-419 |
1.50e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.07 E-value: 1.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 275 AEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPqsdnrgkwdsllkvNRYWL 354
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP--------------DEPEA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 355 LIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGN 419
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
254-552 |
1.96e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.64 E-value: 1.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 254 AARTQLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIAL 333
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 334 DPqsdnrgkwdsllkvNRYWLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQAL 413
Cdd:COG3914 108 NP--------------DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 414 RMDSGNSNAVRGLANIYRAQspekatqfiqslsasqrrsiddiersltneqlsaqaeqleseGKYAQAAEIQRRRLALSP 493
Cdd:COG3914 174 ELDPDNAEALNNLGNALQDL------------------------------------------GRLEEAIAAYRRALELDP 211
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1541808936 494 GDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAALAH 552
Cdd:COG3914 212 DNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALA 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
277-486 |
9.32e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 69.27 E-value: 9.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 277 GLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSdnrgkwdsllkvnrYWLLI 356
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD--------------AEALY 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 357 QQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQSPE 436
Cdd:COG0457 115 NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1541808936 437 KATQFIQSLSASQRRSIDDIERSLTNEQLSAQAEQLESEGKYAQAAEIQR 486
Cdd:COG0457 195 VLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
347-600 |
3.27e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.72 E-value: 3.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 347 LKVNRYWLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGL 426
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 427 ANIYRAQspekatqfiqslsasqrrsiddiersltneqlsaqaeqleseGKYAQAAEIQRRRLALSPGDVWITYRLSRDL 506
Cdd:COG0457 83 GLALQAL------------------------------------------GRYEEALEDYDKALELDPDDAEALYNLGLAL 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 507 YSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAALAHLNTLPRDKWNGNIQAQADRLQSNQVLETANRLRD 586
Cdd:COG0457 121 LELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
|
250
....*....|....
gi 1541808936 587 SGKEQEAETLLRQQ 600
Cdd:COG0457 201 LALEQALRKKLAIL 214
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
353-529 |
1.25e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.29 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 353 WLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRA 432
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 433 QspekatqfiqslsasqrrsiddiersltneqlsaqaeqleseGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQR 512
Cdd:COG4783 85 A------------------------------------------GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
170
....*....|....*..
gi 1541808936 513 SQADNLMRQLASQKPGD 529
Cdd:COG4783 123 DEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
167-418 |
4.11e-11 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 65.70 E-value: 4.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 167 AINQLKKINASSPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKsnngRSQASDMWYQQIKDQpvssasvTALQQYLSVF 246
Cdd:COG3071 104 ALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRK----HKALSAEEAQALERR-------AYLGLLRQAA 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 247 SDGDNVTAARTQLEAQQKQLADPAFRAkAEGLAAvdAGQGSKAVTELQKAVsANHADSEAVGALGQAysQKGDRARAVAQ 326
Cdd:COG3071 173 RDAEALKALWKALPRAERRDPELAAAY-ARALIA--LGDHDEAERLLREAL-KRQWDPRLVRLYGRL--QGGDPAKQLKR 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 327 FEKAIALDPQSDnrgkwdsllkvnryWLLIQQGDNALKANNTAQAERYYQQARNIDNtDSYAVLGLGDAAAARKDNDAAE 406
Cdd:COG3071 247 AEKWLKKHPNDP--------------DLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAA 311
|
250
....*....|..
gi 1541808936 407 RYYRQALRMDSG 418
Cdd:COG3071 312 EHYRKALALALG 323
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
254-416 |
5.97e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 5.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 254 AARTQLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIAL 333
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 334 DPQsdnrgkwDSLLKVNRYWLLIQQGDnalkannTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQAL 413
Cdd:COG5010 84 DPN-------NPELYYNLALLYSRSGD-------KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
...
gi 1541808936 414 RMD 416
Cdd:COG5010 150 GTS 152
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
58-416 |
1.30e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 58 IDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQssrttmllstpdgrqaLQQARLLATTGHTQEAIAAYD 137
Cdd:COG2956 37 LDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL----------------LELAQDYLKAGLLDRAEELLE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 138 KLFDgkppsgdiateywnvvakeparrnlainqlkkinaSSPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGRSQ 217
Cdd:COG2956 101 KLLE-----------------------------------LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 218 AsdmwyqqikdqpvssasvtalqqylsvfsdgdnvtaartqleaqQKQLADpafrakaeglAAVDAGQGSKAVTELQKAV 297
Cdd:COG2956 146 A--------------------------------------------YCELAE----------LYLEQGDYDEAIEALEKAL 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 298 SANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPqsdnrgkwdsllkvNRYWLLIQQGDNALKANNTAQAERYYQQ 377
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP--------------DYLPALPRLAELYEKLGDPEEALELLRK 237
|
330 340 350
....*....|....*....|....*....|....*....
gi 1541808936 378 ARNIDNTDSyAVLGLGDAAAARKDNDAAERYYRQALRMD 416
Cdd:COG2956 238 ALELDPSDD-LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
395-676 |
1.77e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.01 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 395 AAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQSPEKATQFIQSLSASQRRSIDDIERSLTNEQLSAQAEQLES 474
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 475 EGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDpdqvyasglylsgndqdraALAHLN 554
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF-------------------AEAYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 555 tlprdkwngniQAQAdrlqsnqvletanrLRDSGKEQEAETLLRQ----QPPSTRIDLTLADWAEQRGDHEAAKTAYNTI 630
Cdd:COG3914 152 -----------LGEA--------------LRRLGRLEEAIAALRRalelDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1541808936 631 LQREPQNEDAILGLTEVYLAQGNKDAARAALAKLPAAQNGEPLSIN 676
Cdd:COG3914 207 LELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSP 252
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
313-416 |
1.13e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 313 AYSQKGDRARAVAQFEKAIALDPQsdnrgkwDSLLKVNRYWLLIQQGDnalkannTAQAERyYQQARNIDNTDSYAVLGL 392
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-------NADALNNLGLLLLEQGR-------YDEAIA-LEKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|....
gi 1541808936 393 GDAAAARKDNDAAERYYRQALRMD 416
Cdd:COG3063 66 AELLLELGDYDEALAYLERALELD 89
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
322-445 |
1.24e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.32 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 322 RAVAQFEKAIALDPQSDnrgkwdsllkvnRYWLLIqqGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKD 401
Cdd:COG4235 1 EAIARLRQALAANPNDA------------EGWLLL--GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGD 66
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1541808936 402 NDAAERYYRQALRMDSGNSNAVRGLANIY-RAQSPEKATQFIQSL 445
Cdd:COG4235 67 TEEAEELLERALALDPDNPEALYLLGLAAfQQGDYAEAIAAWQKL 111
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
299-433 |
1.97e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 1.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 299 ANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDNRGKWDSLLKVNRYWLLIQQGDNALKANNTAQAERYYQQA 378
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 379 RNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQ 433
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
608-742 |
2.07e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 2.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 608 LTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKLPAAQNGEPlsiNMQRRLAMAQAG 687
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP---EARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 688 LGDPAAAEKTFNAILpqaKSQPpsmESALVMRDAARFQAQNGQPQQALDTWKDAM 742
Cdd:COG4783 85 AGDYDEALALLEKAL---KLDP---EHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
591-710 |
9.43e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.01 E-value: 9.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 591 QEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKLPAAQNG 670
Cdd:COG4235 4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD 83
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1541808936 671 EPLSinmQRRLAMAQAGLGDPAAAEKTFNAILPQAKSQPP 710
Cdd:COG4235 84 NPEA---LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
618-672 |
3.06e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 51.43 E-value: 3.06e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 618 GDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKLPAAQNGEP 672
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDP 56
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
273-475 |
8.35e-08 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 55.33 E-value: 8.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 273 AKAEglAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPqSDNRGKwdsllkvnrY 352
Cdd:cd24142 5 EKAE--ELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-DGGYEK---------Y 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 353 WLL--IQQGDNALkanntaqaeRYYQQA-----RNIDNTDSYAVLGLGDAAAARK------------------DNDAAE- 406
Cdd:cd24142 73 LYLgqLSGGEEAL---------QYYEKGieileEELQALQAASAEAEEEAEELKRklssalcalaeiymtdlcDEPDAEq 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1541808936 407 ---RYYRQALRMDSGNSNAVRGLANIYRAQS-PEKATQFIqslsasqRRSIDDIERSLTNEQLSAQAEQLESE 475
Cdd:cd24142 144 rceELITKALELDPTNPEALQTLASLRISQQrPDEAKEAL-------RRSLELWKDLKEEDEEEAEEDEAEEE 209
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
355-702 |
1.09e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 54.92 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 355 LIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRglaniyraqs 434
Cdd:COG3071 19 ALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVL---------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 435 pekatqfiqslsasqrrsiddiersLTneqlsaQAEQLESEGKYAQAAEIQRRRLALSPGDVWItYRLSRDLYS-AGQRS 513
Cdd:COG3071 89 -------------------------LT------RAELLLDQGQAEQALATLEALRAGAPRHPQV-LRLLLQAYRqLGDWE 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 514 QADNLMRQLASQKPGDPD-------QVYASGLYLSGNDQDrAALAHLNTLPRdkwngniqaqADRLQSNQVLETANRLRD 586
Cdd:COG3071 137 ELLELLPALRKHKALSAEeaqalerRAYLGLLRQAARDAE-ALKALWKALPR----------AERRDPELAAAYARALIA 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 587 SGKEQEAETLLRQ---QPPSTRIDLTLADwAEQRGDHEAAKTAyNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAK 663
Cdd:COG3071 206 LGDHDEAERLLREalkRQWDPRLVRLYGR-LQGGDPAKQLKRA-EKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEA 283
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1541808936 664 -LPAAQNGEPLsinmqRRLAMAQAGLGDPAAAEKTFNAIL 702
Cdd:COG3071 284 aLALRPSAEAY-----AELARLLEQLGDPEEAAEHYRKAL 318
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
622-741 |
1.36e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 622 AAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKlpaAQNGEPLSINMQRRLAMAQAGLGDPAAAEKTFNAI 701
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK---ALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1541808936 702 LPQAksqpPSMESALVMrdAARFQAQNGQPQQALDTWKDA 741
Cdd:COG4235 78 LALD----PDNPEALYL--LGLAAFQQGDYAEAIAAWQKL 111
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
217-382 |
1.37e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.27 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 217 QASDMWYQQIKDQPVSSASVTALQQYLSVFSDGDNVTAARTQLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKA 296
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 297 VSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQsdnrgkwDSLLKVNRYWLLIQQGDnalkannTAQAERYYQ 376
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD-------NPNAYSNLAALLLSLGQ-------DDEAKAALQ 146
|
....*.
gi 1541808936 377 QARNID 382
Cdd:COG5010 147 RALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
362-451 |
1.60e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.17 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 362 ALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERyYRQALRMDSGNSNAVRGLANIYRAQS-PEKATQ 440
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGdYDEALA 80
|
90
....*....|.
gi 1541808936 441 FIQSLSASQRR 451
Cdd:COG3063 81 YLERALELDPS 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
616-702 |
1.86e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 50.76 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 616 QRGDHEAAKTAYNTILQREPQNE---DAILGLTEVYLAQGNKDAARAALAKLPAAQNGEPLSINMQRRLAMAQAGLGDPA 692
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYD 84
|
90
....*....|
gi 1541808936 693 AAEKTFNAIL 702
Cdd:COG1729 85 KARATLEELI 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
531-664 |
2.74e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 2.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 531 DQVYASGLYLSGNDQDRAALAHLNTLprdkwngnIQAQADRLQSNQVLetANRLRDSGKEQEAETLLRQ----QPPSTRI 606
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKA--------LELDPDNPEAFALL--GEILLQLGDLDEAIVLLHEalelDPDEPEA 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1541808936 607 DLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKL 664
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
521-663 |
5.55e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 5.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 521 QLASQKPGDPDQVYASGLYLSGNDQDRAALAHLNTLPRDKWNGNIQAQADRLQSNQVLETANRLRDSGKEQEAETLLRQ- 599
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQa 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1541808936 600 ---QPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAK 663
Cdd:COG5010 81 lqlDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
489-702 |
7.47e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.93 E-value: 7.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 489 LALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAALAHLNtlprdkwngniqaQ 568
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYE-------------Q 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 569 ADRLQSNQV---LETANRLRDSGKEQEAETLLRQ----QPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAI 641
Cdd:COG0457 68 ALELDPDDAealNNLGLALQALGRYEEALEDYDKalelDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1541808936 642 LGLTEVYLAQGNKDAARAALAKLPAAQNGEPLSINMQRRLAMAQAGLGDPAAAEKTFNAIL 702
Cdd:COG0457 148 YNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
565-702 |
1.18e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 565 IQAQADRLQSNQVLETANRLRDSGKEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGL 644
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1541808936 645 TEVYLAQGNKDAARAALAKlpaAQNGEPLSINMQRRLAMAQAGLGDPAAAEKTFNAIL 702
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEK---ALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
277-378 |
1.19e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 50.68 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 277 GLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDNRGKWDSLL------KVN 350
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAerkldpEKA 193
|
90 100
....*....|....*....|....*...
gi 1541808936 351 RYWLLIQQGDNALKANNTAQAERYYQQA 378
Cdd:COG4785 194 LALLLEDWATAYLLQGDTEEARELFKLA 221
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
279-382 |
1.23e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 279 AAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVaQFEKAIALDPqsdnrgkwdsllkvNRYWLLIQQ 358
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDP--------------NNAEALLNL 65
|
90 100
....*....|....*....|....
gi 1541808936 359 GDNALKANNTAQAERYYQQARNID 382
Cdd:COG3063 66 AELLLELGDYDEALAYLERALELD 89
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
581-741 |
1.43e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 581 ANRLRDSGKEQEAETLLRQ----QPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDA 656
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQalelDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 657 ARAALAKlpaAQNGEPLSINMQRRLAMAQAGLGDPAAAEKTFNAILPQAKSQPPSMESALVMRDAARFQAQNGQPQQALD 736
Cdd:COG0457 129 AIEAYER---ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
....*
gi 1541808936 737 TWKDA 741
Cdd:COG0457 206 ALRKK 210
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
276-627 |
1.52e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.45 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 276 EGLAAVDAGQGSKAVTELQKAvsANHADSEAVGALGQAYS--QKGDRARAVAQFEKAIALDPQSDnrgkwdslLKVnryw 353
Cdd:COG3071 22 EGLLALAEGRYARAEKLLSKA--AEHSEAPLLAYLLAARAaqALGDYERRDEYLAQALELAPEAE--------LAV---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 354 lLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGL-ANIYR- 431
Cdd:COG3071 88 -LLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALeRRAYLg 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 432 -----AQSPEKATQFIQSLSASQRRSIddiersltnEQLSAQAEQLESEGKYAQAAEIQRRRLALSPgdvwityrlSRDL 506
Cdd:COG3071 167 llrqaARDAEALKALWKALPRAERRDP---------ELAAAYARALIALGDHDEAERLLREALKRQW---------DPRL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 507 YSAGQRSQADNLMRQLA------SQKPGDPDqvyasgLYLsgndqdraALAHLntlprdkwngniqaqadrlqsnqvlet 580
Cdd:COG3071 229 VRLYGRLQGGDPAKQLKraekwlKKHPNDPD------LLL--------ALGRL--------------------------- 267
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1541808936 581 ANRLRDSGKEQEA-ETLLRQQpPSTRIDLTLADWAEQRGDHEAAKTAY 627
Cdd:COG3071 268 CLRNQLWGKAREYlEAALALR-PSAEAYAELARLLEQLGDPEEAAEHY 314
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
312-432 |
1.56e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.06 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 312 QAYSQKGDRARAVAQFEKAIALDPQSDNRGKWdsllkvnRYWLliqqGDNALKANNTAQAERYYQQARNIDNTDSY---A 388
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDA-------LYWL----GEAYYALGDYDEAAEAFEKLLKRYPDSPKapdA 69
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1541808936 389 VLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRA 432
Cdd:COG1729 70 LLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
202-411 |
2.12e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 49.91 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 202 FAVLQEMAKSNNGRSQASDMWYQQIKDQPVSSASVTALQQYLSVFSDGDNVTAARTQLEAQQkQLADPAFRAKAEGLAAV 281
Cdd:COG4785 6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 282 DAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDnrgkwDSLLkvNRYWLLIQQGDn 361
Cdd:COG4785 85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA-----YAYL--NRGIALYYLGR- 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1541808936 362 alkannTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQ 411
Cdd:COG4785 157 ------YELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLED 200
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
188-337 |
2.36e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.26 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 188 LAQLLFQSGRRDEGFAVLQEMAKSNNGrsqasdmwyqqikdqpvssaSVTALQQYLSVFSDGDNVTAARTQLEAQQKQLA 267
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPD--------------------NPEAFALLGEILLQLGDLDEAIVLLHEALELDP 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 268 DPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQS 337
Cdd:COG4783 70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PGA_TPR_OMP |
TIGR03939 |
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the ... |
51-430 |
5.89e-06 |
|
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.
Pssm-ID: 274868 [Multi-domain] Cd Length: 800 Bit Score: 50.43 E-value: 5.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 51 SLYRLEL-IDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQSSRTTMLLSTP---DGRQALQQArlLATT 126
Cdd:TIGR03939 107 ELYRKLLqRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVLRAAEdhlDALQAWQQA--LTLE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 127 GHTQEAIAAYDKLFDG---KPPSGDIATEYWNVVAKEPARR---NLAINQLKkinasspgNVPLQSSLAQLLFQSGRRde 200
Cdd:TIGR03939 185 PDNPEAALELYRILTRlgaPPAAARLAKQYPDLFTPEDQRWlehDQAAELVR--------LGENPSRSEKERFAIADR-- 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 201 gfAVLQEMAKSNNGRSQASDMwYQQIKDQPVSSASVtaLQQYLSVFSDGDnvtaartQLEAQQKQLADPAFRAKAEglAA 280
Cdd:TIGR03939 255 --ALADLQALLDKWGPQANPL-YRRARIDRLGALLV--RKRYAEVIREYE-------SLEAEGQPLPPYAQEAVAD--AY 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 281 VDAGQGSKAVtELQKAVSANH---ADSEAVGALGQAYSQKGdraravaQFEKAIAL-DPQSDNRGKWDSLL-----KVNR 351
Cdd:TIGR03939 321 LALRQPEKAL-PIYRELAAAEpadNNLELTIKLFYAYLEAE-------QYDEAQALlDGLKESTPPQRWDFtrstkAPND 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 352 YWLLIQQGD-NALKA-NNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANI 429
Cdd:TIGR03939 393 DYLEAQQLLvLSLAWrGDLPEAEARLDELLATAPGNPWLRLALADVYRARGWPRRAEQEYKQAESLDPDSLSAERGQAET 472
|
.
gi 1541808936 430 Y 430
Cdd:TIGR03939 473 A 473
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
576-734 |
7.34e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 48.89 E-value: 7.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 576 QVLETANRLRDSG------KEQEAETLLRQQPPSTridLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYL 649
Cdd:pfam13429 114 SALYLYERAGDYDrlarllASLEELPAAEQSPAFW---LARAEYYRQTGEPDAALRDYRRALALAPASTELRAALLWFLI 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 650 AQGNKDAARAALAKLPAAQNGEPlsiNMQRRLAMAQAGLGDPAAAEKTFNAILPQAKSQPpsmesaLVMRDAARFQAQNG 729
Cdd:pfam13429 191 DLGRRAELRPALAAWRARAETDA---DLWGPLAAAYLRLGRPRKALPYLRKQAASNRNDP------LWLLAYADALEQAG 261
|
....*
gi 1541808936 730 QPQQA 734
Cdd:pfam13429 262 RADAA 266
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
249-340 |
7.80e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 7.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 249 GDNVTAARTQLEAQQKQLADPAFRAKAeGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFE 328
Cdd:COG4235 31 GRYDEALAAYEKALRLDPDNADALLDL-AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109
|
90
....*....|..
gi 1541808936 329 KAIALDPQSDNR 340
Cdd:COG4235 110 KLLALLPADAPA 121
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
575-740 |
8.53e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 48.72 E-value: 8.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 575 NQVLETANRLRDSGKE-QEAETLLRQQP-PSTRIDLtlADWAEQRGDHEAAKTAYNTILQRE-PQNEDAILGLTEVYLAQ 651
Cdd:COG4700 60 RRVQRAARNALDPGRElRELEKALEFADtVQNRVRL--ADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFEL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 652 GNKDAARAALAKL----PAAQNGEPlsinmQRRLAMAQAGLGDPAAAEKTFNAILPQAksqpPSMESALVMrdaARFQAQ 727
Cdd:COG4700 138 GRYAEALETLEKLiaknPDFKSSDA-----HLLYARALEALGDLEAAEAELEALARRY----SGPEARYRY---AKFLAR 205
|
170
....*....|...
gi 1541808936 728 NGQPQQALDTWKD 740
Cdd:COG4700 206 QGRTAEAKELLEE 218
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
395-493 |
1.16e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.16 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 395 AAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQ-SPEKATQFIQSLSASQRRSiddiersltnEQLSAQAEQLE 473
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQgRYDEAIALEKALKLDPNNA----------EALLNLAELLL 70
|
90 100
....*....|....*....|
gi 1541808936 474 SEGKYAQAAEIQRRRLALSP 493
Cdd:COG3063 71 ELGDYDEALAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
278-380 |
1.48e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.37 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 278 LAAVDAGQGSKAVTELQKAVSANHADS---EAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDNRGkwDSLLKvnrywl 354
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP--DALLK------ 72
|
90 100
....*....|....*....|....*.
gi 1541808936 355 liqQGDNALKANNTAQAERYYQQARN 380
Cdd:COG1729 73 ---LGLSYLELGDYDKARATLEELIK 95
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
463-637 |
2.78e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 463 EQLSAQAEQLESEGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSG 542
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 543 NDQDRAALAHLntlprdkwngniqaqadrlqsnqvletanrlrdsgkeqeaETLLRQQPPSTRIDLTLADWAEQRGDHEA 622
Cdd:COG4783 85 AGDYDEALALL----------------------------------------EKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
170
....*....|....*
gi 1541808936 623 AKTAYNTILQREPQN 637
Cdd:COG4783 125 AIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
614-702 |
3.24e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 614 AEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAalakLPAAQNGEPLSINMQRRLAMAQAGLGDPAA 693
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA----LEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
....*....
gi 1541808936 694 AEKTFNAIL 702
Cdd:COG3063 78 ALAYLERAL 86
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
584-664 |
3.25e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 584 LRDSGKEQEAETLLRQ----QPPSTRID---LTLADWAEQRGDHEAAKTAYNTILQREPQNE---DAILGLTEVYLAQGN 653
Cdd:COG1729 3 LLKAGDYDEAIAAFKAflkrYPNSPLAPdalYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGD 82
|
90
....*....|.
gi 1541808936 654 KDAARAALAKL 664
Cdd:COG1729 83 YDKARATLEEL 93
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
64-212 |
6.47e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 64 DVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQSSRttmllstpdgrqalqqARLLATTGHTQEAIAAYDKLFDGK 143
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL----------------GEILLQLGDLDEAIVLLHEALELD 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541808936 144 PPSGDIATEYWNVVAKEpARRNLAINQLKKINASSPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSN 212
Cdd:COG4783 69 PDEPEARLNLGLALLKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
310-377 |
6.95e-05 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 43.42 E-value: 6.95e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1541808936 310 LGQAYSQKGDRARAVAQFEKAIALDPQSDNRGkwDSLLKvnrywlliqQGDNALKANNTAQAERYYQQ 377
Cdd:TIGR02795 43 LGEAYYAQGDYADAAKAFLAVVKKYPKSPKAP--DALLK---------LGMSLQELGDKEKAKATLQQ 99
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
289-490 |
7.65e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 45.29 E-value: 7.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 289 AVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDPQSDNRgKWDSLLKVNRYWLLIQQGDNALKANNT 368
Cdd:COG4785 11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAER-IDRALALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 369 AQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAV--RGLANIYRAQSPEKATQFIQSLS 446
Cdd:COG4785 90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYlnRGIALYYLGRYELAIADLEKALE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1541808936 447 ASQRRSIDDIERSLTNEQLSAQ----------AEQLESEGKYAQAAEIQRRRLA 490
Cdd:COG4785 170 LDPNDPERALWLYLAERKLDPEkalallledwATAYLLQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
378-531 |
7.79e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 7.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 378 ARNIDNTDSYAVLGlgDAAAARKDNDAAERYYRQALRMDSGNSNAVRGLANIYRAQspekatqfiqslsasqrrsiddie 457
Cdd:COG4235 11 AANPNDAEGWLLLG--RAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAA------------------------ 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541808936 458 rsltneqlsaqaeqleseGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPD 531
Cdd:COG4235 65 ------------------GDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
112-218 |
8.57e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 8.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 112 DGRQALQQARLLATTGHTQEAIAAYDKLFDGKPPSGDIATEYWNVVAKEpARRNLAINQLKKINASSPGNVPLQSSLAQL 191
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAA-GDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100
....*....|....*....|....*..
gi 1541808936 192 LFQSGRRDEGFAVLQEMAKSNNGRSQA 218
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
184-686 |
1.18e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 46.39 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 184 LQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGRSQASdmwyQQIKDQPVSSASVTalqqYLSVFSDGDNVTAARTQLEAQQ 263
Cdd:COG3899 747 LLLELAEALYLAGRFEEAEALLERALAARALAALAA----LRHGNPPASARAYA----NLGLLLLGDYEEAYEFGELALA 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 264 --KQLADPAFRAKAE---GLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQfekAIALDPQSD 338
Cdd:COG3899 819 laERLGDRRLEARALfnlGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAAL---AAAAAAAAR 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 339 NRGKWDSLLKVNRYWLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSG 418
Cdd:COG3899 896 LLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAA 975
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 419 NSNAVRGLANIYRAQSPEKATQFIQSLSASQRRSIDDIERSLTNEQLSAQAEQLESEGKYAQAAEIQRRRLALSPGDVWI 498
Cdd:COG3899 976 AAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAA 1055
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 499 TYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRAALAHLNTLPRDKWNGNIQAQADRLQSNQVL 578
Cdd:COG3899 1056 AAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAAL 1135
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 579 ETANRLRDSGKEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAAR 658
Cdd:COG3899 1136 LLLAAALALALAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALALL 1215
|
490 500
....*....|....*....|....*...
gi 1541808936 659 AALAKLPAAQNGEPLSINMQRRLAMAQA 686
Cdd:COG3899 1216 ALEAAALLLLLLLAALALAAALLALRLL 1243
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
590-664 |
1.26e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.26e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 590 EQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKtAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKL 664
Cdd:COG3063 12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
54-210 |
1.70e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 44.72 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 54 RLELIDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQssrttmllstpdgrqaLQQARLLATTGHTQEAI 133
Cdd:COG2956 135 RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL----------------LLLAELYLEQGDYEEAI 198
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1541808936 134 AAYDKLFDGKPPSGDIATEYWNVVAKEpARRNLAINQLKKINASSPGNVPLqSSLAQLLFQSGRRDEGFAVLQEMAK 210
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKL-GDPEEALELLRKALELDPSDDLL-LALADLLERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
19-206 |
1.89e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.75 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 19 PLAQAANSPQQRQLLEQVRLGESTQREDLVRQSLYRLELIDPNNPDVIAARF---RYLLRQGDTAGAQKELDRLKGMAPD 95
Cdd:COG3914 31 ELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLElaaLLLQALGRYEEALALYRRALALNPD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 96 SSAYQSSRttmllstpdgrqalqqARLLATTGHTQEAIAAYDKLFDGKPpsgDIATEYWN--VVAKEPARRNLAINQLKK 173
Cdd:COG3914 111 NAEALFNL----------------GNLLLALGRLEEALAALRRALALNP---DFAEAYLNlgEALRRLGRLEEAIAALRR 171
|
170 180 190
....*....|....*....|....*....|...
gi 1541808936 174 INASSPGNVPLQSSLAQLLFQSGRRDEGFAVLQ 206
Cdd:COG3914 172 ALELDPDNAEALNNLGNALQDLGRLEEAIAAYR 204
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
357-420 |
2.09e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.78 E-value: 2.09e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1541808936 357 QQGDNALKANNTAQAERYYQQA--RNIDNTDSY-AVLGLGDAAAARKDNDAAERYYRQALRMDSGNS 420
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAAlaRFPESPDAAaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
283-695 |
3.10e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 45.23 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 283 AGQGSKAVTELQKAvsanhadseavgalGQAYSQKGDRARAVAQFEKAIALDPQSDNRGKwdsllkvnRYWLLIQQGDNA 362
Cdd:COG3899 698 AGERDRAARLLLRA--------------ARRALARGAYAEALRYLERALELLPPDPEEEY--------RLALLLELAEAL 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 363 LKANNTAQAERYYQQARNIDNTDSYAVLGLGD-----------AAAARKDNDAAERYYRQALRM-DSGNSNAVRGLANIY 430
Cdd:COG3899 756 YLAGRFEEAEALLERALAARALAALAALRHGNppasarayanlGLLLLGDYEEAYEFGELALALaERLGDRRLEARALFN 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 431 RA------QSPEKATQFIQSLSASQRRSIDDIERSLTNEQLSAQAEQLESEGKYAQAAEIQRRRLALSPGDVWITYRLSR 504
Cdd:COG3899 836 LGfilhwlGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAA 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 505 DLYSAGQRSQADNLMRqlasqkpgdpdqvYASGLYLSGNDQDRAALAHLNTLPRDKWNGNIQAQADRLQSNQVLETANRL 584
Cdd:COG3899 916 AELARLAAAAAAAAAL-------------ALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAA 982
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 585 RDSGKEQEAETLLRQQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDAARAALAKL 664
Cdd:COG3899 983 AAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAAL 1062
|
410 420 430
....*....|....*....|....*....|.
gi 1541808936 665 PAAQNGEPLSINMQRRLAMAQAGLGDPAAAE 695
Cdd:COG3899 1063 AAAAALLAAAAAAAAAAAAAAAAAALAAALA 1093
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
581-684 |
4.74e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 581 ANRLRDSGKEQEAETLLRQ----QPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQNEDAILGLTEVYLAQGNKDA 656
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKalrlDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|....*...
gi 1541808936 657 ARAALAKLPAAQNGEPLSINMQRRLAMA 684
Cdd:COG4235 104 AIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
396-708 |
5.54e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 43.45 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 396 AAARKDNDAAERYYRQALRMDSGNSNAVR-------GLANIYRAQSpEKATQFIQSLSASQRRsiDDIERSlTNEQLSAQ 468
Cdd:pfam17874 11 AISKGDAERALELAEQALALLPEDDLLARglatfvlGEAYLCLGDL-DAALQAMREAEALARR--ADSPHV-TLWALLQQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 469 AEQLESEGKYAQAAEIQRRRLALSPgdvwityrlsrdlysagqrsqaDNLMRQLASQkpGDPdQVYASGLYLSGNDQDrA 548
Cdd:pfam17874 87 GEILRAQGRLHQALETYQQALQLAR----------------------DHGLQHLPLH--GFL-LVGLADLLYEWNDLE-E 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 549 ALAHLntlpRDKWNGNIQAQADR-LQSNQVLEtanRLRDS-GKEQEAETLLRQ------QPPSTRIDLTLADWAE----- 615
Cdd:pfam17874 141 AEQHA----QQGIQLGRQWEPDAaVDAYVLLA---RIALAqGELEEALTLLRRaellarQSFFHVDWLANAERVRvrlwl 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 616 QRGDHEAA----------KTAYNTILQREPQNedailgLTEVYLAQGNKDAARAALAKL-PAAQNGEPLSINMQRRLAMA 684
Cdd:pfam17874 214 ARGDLRAAvrwlraaeppSDADNHFLERELRN------LARVLLALGRFDDALSLLERLqNLAEQLGRVRSLIENLILQA 287
|
330 340
....*....|....*....|....*.
gi 1541808936 685 QA--GLGDPAAAEKTFNAILPQAKSQ 708
Cdd:pfam17874 288 LAllALGRPDEALQALLDALSLAEPE 313
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
114-414 |
9.19e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 42.73 E-value: 9.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 114 RQALQQARLLATTGHTQEAIAAYDKLFDGKPPSgdiATEYWnvvakeparRNLAinqlkkinasspgnvplqsSLAQLLF 193
Cdd:pfam13429 9 NEAYALATLLYGQGDPRKALAALKEGAQTAPAS---DTEFW---------RTLA-------------------DLAWALQ 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 194 QSgrrDEGFAVLQEMAKSNNgrsqasdmwyqqikdqpvssASVTALQQYLSVFSDGDNVTAARTQLEAQQKqladpaFRA 273
Cdd:pfam13429 58 QD---DDARRAYRQLLASGK--------------------ARADDYERLILLLYDARPKDAARLSELGWRR------FRS 108
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 274 KAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVG------ALGQAYSQKGDRARAVAQFEKAIALDPQSD--------- 338
Cdd:pfam13429 109 PRHLYSALYLYERAGDYDRLARLLASLEELPAAEQspafwlARAEYYRQTGEPDAALRDYRRALALAPASTelraallwf 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 339 --NRGKWDSLLKVNRYWLLIQQGDNAL---------KANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAER 407
Cdd:pfam13429 189 liDLGRRAELRPALAAWRARAETDADLwgplaaaylRLGRPRKALPYLRKQAASNRNDPLWLLAYADALEQAGRADAAWR 268
|
....*..
gi 1541808936 408 YYRQALR 414
Cdd:pfam13429 269 LRRQAWR 275
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
242-333 |
9.26e-04 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 40.75 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 242 YLSVFSDGDNVTAARTQLEAQQKQladpAFRAKAEglAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRA 321
Cdd:smart01043 39 LLADVPDEDWAEAERERLRELRLE----ALEALAE--ALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRA 112
|
90
....*....|..
gi 1541808936 322 RAVAQFEKAIAL 333
Cdd:smart01043 113 EALRAYRRLRRL 124
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
277-335 |
1.05e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 1.05e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1541808936 277 GLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDP 335
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
447-664 |
1.44e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 41.77 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 447 ASQRRSIDDIERSLTNEQLSAQAEQLESEGKYAQAAEIQRRRLALSPGDVWITyRLSRDL----YSAGQRSQADNLMRQL 522
Cdd:TIGR03302 18 SSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAE-QAQLDLayayYKSGDYAEAIAAADRF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 523 ASQKPGDPDQVYAsgLYLSGndqdraaLAHLNTLPRdkwngniqaqADRLQSNqvLETAnrlrdsgkEQEAETLLRQQPP 602
Cdd:TIGR03302 97 IRLHPNHPDADYA--YYLRG-------LSNYNQIDR----------VDRDQTA--AREA--------FEAFQELIRRYPN 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 603 S-------TRID----------LTLADWAEQRGDHEAAKTAYNTILQREPQN---EDAILGLTEVYLAQGNKDAARAALA 662
Cdd:TIGR03302 148 SeyapdakKRMDylrnrlagkeLYVARFYLKRGAYVAAINRFQTVVENYPDTpatEEALARLVEAYLKLGLTDLAQDAAA 227
|
..
gi 1541808936 663 KL 664
Cdd:TIGR03302 228 VL 229
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
277-335 |
1.47e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 1.47e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1541808936 277 GLAAVDAGQGSKAVtELQKAVSANHADSEAVGALGQAYSQKGDRARAVAQFEKAIALDP 335
Cdd:COG3063 33 GLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
275-337 |
1.68e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 1.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1541808936 275 AEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGA---LGQAYSQKGDRARAVAQFEKAIALDPQS 337
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAAlllLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
54-264 |
1.92e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 54 RLELIDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQSSRTTMLLSTPDGRQALQQARLLATTGHTQEAI 133
Cdd:COG2956 67 KLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 134 AAYdklfdgkppsgdIATEYWNvvAKEPARrnlAINQLKKINASSPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNN 213
Cdd:COG2956 147 YCE------------LAELYLE--QGDYDE---AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1541808936 214 GRSQASDMWYQQIKDQPVSSASVTALQQYLSVFSDGDNVTAARTQLEAQQK 264
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG 260
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
305-336 |
2.00e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.61 E-value: 2.00e-03
10 20 30
....*....|....*....|....*....|..
gi 1541808936 305 EAVGALGQAYSQKGDRARAVAQFEKAIALDPQ 336
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
346-527 |
2.17e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 346 LLKVNRYWLLIQQGDNALKANNTAQAERYYQQARNIDNTDSYAVLGLGDAAAARKDNDAAERYYRQALRMDSGNSNAVRG 425
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 426 LANIYRAQspekatqfiqslsasqrrsiddiersltneqlsaqaeqleseGKYAQAAEIQRRRLALSPGDVWITYRLSRD 505
Cdd:COG5010 94 LALLYSRS------------------------------------------GDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
|
170 180
....*....|....*....|..
gi 1541808936 506 LYSAGQRSQADNLMRQLASQKP 527
Cdd:COG5010 132 LLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
648-739 |
2.62e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 648 YLAQGNKDAARAALAKLPAAQNGEPLSINMQRRLAMAQAGLGDPAAAEKTFNAILpqaKSQPPSMESALVMRDAARFQAQ 727
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLL---KRYPDSPKAPDALLKLGLSYLE 79
|
90
....*....|..
gi 1541808936 728 NGQPQQALDTWK 739
Cdd:COG1729 80 LGDYDKARATLE 91
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
224-332 |
2.75e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 224 QQIKDQPVSSASVTALQQYLSVFSDGDNVTAARTQLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHAD 303
Cdd:PRK09510 114 QEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAA 193
|
90 100
....*....|....*....|....*....
gi 1541808936 304 SEAVGALGQAYSQKGDRARAVAQfEKAIA 332
Cdd:PRK09510 194 KAAAEAKKKAEAEAKKKAAAEAK-KKAAA 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
469-572 |
3.33e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 469 AEQLESEGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPDQVYASGLYLSGNDQDRA 548
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|....*...
gi 1541808936 549 ALAH----LNTLPRDKWNGNIQAQADRL 572
Cdd:COG4235 104 AIAAwqklLALLPADAPARLLEASIAEA 131
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
475-531 |
3.37e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 3.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1541808936 475 EGKYAQAAEIQRRRLALSPGDVWITYRLSRDLYSAGQRSQADNLMRQLASQKPGDPD 531
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPR 57
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
309-336 |
4.06e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 4.06e-03
10 20
....*....|....*....|....*...
gi 1541808936 309 ALGQAYSQKGDRARAVAQFEKAIALDPQ 336
Cdd:pfam07719 6 NLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
58-280 |
4.68e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 58 IDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQSSRttmllstpdgrqalqqARLLATTGHTQEAIAAYD 137
Cdd:COG0457 37 LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL----------------GLALQALGRYEEALEDYD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 138 KLFDGKPpsgDIATEYWN--VVAKEPARRNLAINQLKKINASSPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGR 215
Cdd:COG0457 101 KALELDP---DDAEALYNlgLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1541808936 216 SQASDMWYQQIKDQPVSSASVTALQQYLSVFSDGDNVTAARTQLEAQQKQLADPAFRAKAEGLAA 280
Cdd:COG0457 178 LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
21-219 |
4.85e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.13 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 21 AQAANSPQQRQLLEQVRLGESTQREDLVRQSLyrleLIDPNNPDVIAARFRYLLRQGDTAGAQKELDRLKGMAPDSSAYQ 100
Cdd:COG3914 74 LLLLAALLELAALLLQALGRYEEALALYRRAL----ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 101 ssrttmllstpdgrqaLQQARLLATTGHTQEAIAAYDKLFDGKPPSgdiaTEYWN---VVAKEPARRNLAINQLKKINAS 177
Cdd:COG3914 150 ----------------LNLGEALRRLGRLEEAIAALRRALELDPDN----AEALNnlgNALQDLGRLEEAIAAYRRALEL 209
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1541808936 178 SPGNVPLQSSLAQLLFQSGRRDEGFAVLQEMAKSNNGRSQAS 219
Cdd:COG3914 210 DPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
353-415 |
5.46e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 5.46e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1541808936 353 WLLIQQGDNALKANNTAQAERYYQQARNI------DNTDSYAV--LGLGDAAAARKDNDAAERYYRQALRM 415
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgPDHPLTATtlLNLGRLYLELGRYEEALELLERALAL 74
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
579-664 |
7.30e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 40.18 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 579 ETANRLRDS----GKEQEAETLLR---QQPPSTRIDLTLADWAEQRGDHEAAKTAYNTILQREPQnedaILGLT---EVY 648
Cdd:PRK11788 250 EVLPKLMECyqalGDEAEGLEFLRralEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS----LRGFHrllDYH 325
|
90
....*....|....*.
gi 1541808936 649 LAQGNKDAARAALAKL 664
Cdd:PRK11788 326 LAEAEEGRAKESLLLL 341
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
254-443 |
7.36e-03 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 39.53 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 254 AARTQLEAQQKQLADPAFRAKAEGLAAVDAGQGSKAVTELQKAVSANHADSEAVGALGQAYSQ----KGDRARAVAQFEK 329
Cdd:COG0790 13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEgrgvPKDYEKALEWFEK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541808936 330 AIAldpQSDNRGKwdsllkvNRYWLLIQQGDNAlkANNTAQAERYYQQARNIDNTDSYAVLG--LGDAAAARKDNDAAER 407
Cdd:COG0790 93 AAE---QGDAEAQ-------YNLGLMYEEGLGV--PQDYAKALEWYEKAAEQGDADAQYNLGllYLNGEGVPKDPAKAAE 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1541808936 408 YYRQALrmDSGNSNAVRGLANIYR-----AQSPEKATQFIQ 443
Cdd:COG0790 161 WYRKAA--EQGDADAQYNLGVLYEngrgvPKDPAKALEWYR 199
|
|
| |
