NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1542736336|gb|RTY25442|]
View 

peptide ABC transporter permease SapC [Enterobacter hormaechei subsp. xiangfangensis]

Protein Classification

peptide ABC transporter permease SapC( domain architecture ID 11487658)

peptide ABC transporter permease SapC is the transmembrane subunit (TM) of the periplasmic binding protein (PBP)-dependent ABC transporter complex (SapABCDF) involved in the export of antimicrobial peptides or putrescine, and is responsible for the translocation of the substrate across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK15111 PRK15111
peptide ABC transporter permease SapC;
1-296 0e+00

peptide ABC transporter permease SapC;


:

Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 552.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336   1 MPYDNVYSEKRTPGALRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80
Cdd:PRK15111    1 MPYDSVYSEKRPPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTH 160
Cdd:PRK15111   81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 161 AMFAVWLAILPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLG 240
Cdd:PRK15111  161 AMFAVWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLG 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1542736336 241 AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAINAGVQ 296
Cdd:PRK15111  241 AQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAIIAGVE 296
 
Name Accession Description Interval E-value
PRK15111 PRK15111
peptide ABC transporter permease SapC;
1-296 0e+00

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 552.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336   1 MPYDNVYSEKRTPGALRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80
Cdd:PRK15111    1 MPYDSVYSEKRPPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTH 160
Cdd:PRK15111   81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 161 AMFAVWLAILPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLG 240
Cdd:PRK15111  161 AMFAVWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLG 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1542736336 241 AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAINAGVQ 296
Cdd:PRK15111  241 AQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAIIAGVE 296
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
1-295 1.61e-176

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 488.94  E-value: 1.61e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336   1 MPYDNVYSEKRTPGALRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80
Cdd:COG4171     1 MPSDNIYEEERIPSPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNGDVSFFLGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTH 160
Cdd:COG4171    81 DDLGRDILSRLLYGARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLEN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 161 AMFAVWLAILPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLG 240
Cdd:COG4171   161 AMLAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLG 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1542736336 241 AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAINAGV 295
Cdd:COG4171   241 AQLPSPEWGAMLGDSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGV 295
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-277 4.87e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.23  E-value: 4.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  98 TVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAG--------PHLTHAMFAVWLAI 169
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILALLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 170 LPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAqLPSPEWG 249
Cdd:cd06261    84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTG 162

                         170       180
                  ....*....|....*....|....*...
gi 1542736336 250 AMLGDALELIYVAPWTVMLPGAAIMVSV 277
Cdd:cd06261   163 LLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 113-295 1.71e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 113 GLALGIFAGSTHGLR-SAVLNHILDTLLSIPSLLLAIIVVAFAGP----HLTHAMFAVWLAILPRMVRSVYSLVHDELEK 187
Cdd:pfam00528   1 GIPLGIIAALRRGRRlDRLLRPLIDLLQALPSFVLAILLVVIAILsilgHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 188 EYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFL----DLGAQLPSPEWGAMLGDAleliyvap 263
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEI-------- 152

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1542736336 264 wtvMLPGAAIMVSVLLVNLLGDGIRRAINAGV 295
Cdd:pfam00528 153 ---QGPVLAAALILLLLNLLVDILQRLLDPRV 181
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 34-291 2.14e-08

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 53.70  E-value: 2.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  34 YGCIGLVLLCVLGSW-FAPYGID--------QQFLGY--QLLPPSWSRygevsfflgtddlgrdvLSRLLSGAAPTVGGA 102
Cdd:TIGR01097   5 IRIWLLALLVALYVWaFALLGFDlarllagpGQMADLlgRMFPPDWSY-----------------LPRILKALLETLAMA 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 103 FVVTLAAAICGLALGIFAGST---HGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPhlthAMFAVWLAIlprMVRSV-- 177
Cdd:TIGR01097  68 ILGTVLAAVLAVPLALLAARNitpSPWLYGLARLLLNFLRAIPELVWALIFVAAVGL----GPFAGVLAL---AFHTVgf 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 178 ----YSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVteitrALSMAILDI-----AALGFLDLGAqlpspeW 248
Cdd:TIGR01097 141 lgklFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL-----SYTLYRFEInvraaAVLGLVGAGG------I 209

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1542736336 249 GAMLGDALELIYVApwTVMLPGAAIMVSVLLVNLLGDGIRRAI 291
Cdd:TIGR01097 210 GLELDTAIGLFDYD--EVSAIILVILVVVVIIDLISARLRRRL 250
 
Name Accession Description Interval E-value
PRK15111 PRK15111
peptide ABC transporter permease SapC;
1-296 0e+00

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 552.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336   1 MPYDNVYSEKRTPGALRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80
Cdd:PRK15111    1 MPYDSVYSEKRPPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTH 160
Cdd:PRK15111   81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 161 AMFAVWLAILPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLG 240
Cdd:PRK15111  161 AMFAVWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLG 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1542736336 241 AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAINAGVQ 296
Cdd:PRK15111  241 AQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAIIAGVE 296
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
1-295 1.61e-176

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 488.94  E-value: 1.61e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336   1 MPYDNVYSEKRTPGALRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGT 80
Cdd:COG4171     1 MPSDNIYEEERIPSPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNGDVSFFLGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  81 DDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTH 160
Cdd:COG4171    81 DDLGRDILSRLLYGARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLEN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 161 AMFAVWLAILPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLG 240
Cdd:COG4171   161 AMLAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLG 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1542736336 241 AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAINAGV 295
Cdd:COG4171   241 AQLPSPEWGAMLGDSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGV 295
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 13-292 2.10e-78

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 239.24  E-value: 2.10e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  13 PGALRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSrygevsFFLGTDDLGRDVLSRLL 92
Cdd:COG1173     2 RSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA------HWLGTDQLGRDVLSRLL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  93 SGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLAILPR 172
Cdd:COG1173    76 YGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPG 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 173 MVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAML 252
Cdd:COG1173   156 YARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTML 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1542736336 253 GDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAIN 292
Cdd:COG1173   236 SEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
16-292 4.58e-62

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 198.47  E-value: 4.58e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  16 LRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGA 95
Cdd:PRK10913   19 LQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHILGTDDVGRDVLSRLMYGA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  96 APTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLAILPRMVR 175
Cdd:PRK10913   99 RLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 176 SVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDA 255
Cdd:PRK10913  179 LTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDV 258

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1542736336 256 LELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAIN 292
Cdd:PRK10913  259 LQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
37-288 3.00e-43

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 149.58  E-value: 3.00e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  37 IGLVLLC-VLGSWFAPYGIDQQFLGYQLLPPSwsrygeVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLA 115
Cdd:PRK09881   40 IVLMLLMmIFSPWLATHDPNAIDLTARLLPPS------AAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 116 LGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLAILPRMVRSVYSLVHDELEKEYVVAARL 195
Cdd:PRK09881  114 LGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKT 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 196 DGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMV 275
Cdd:PRK09881  194 FGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILL 273

                         250
                  ....*....|...
gi 1542736336 276 SVLLVNLLGDGIR 288
Cdd:PRK09881  274 TAVGFNLFGDGIR 286
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 12-292 4.42e-43

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 149.49  E-value: 4.42e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  12 TPGALRT----VWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGiDQQFLGYQLL--PPSWSRYgevsffLGTDDLGR 85
Cdd:PRK15082   17 KPDQVRTpwheFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYD-AENYFDYDALnaGPSLQHW------FGVDSLGR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  86 DVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAV 165
Cdd:PRK15082   90 DIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 166 WLAILP---RMVRSvYSLVHDELEkeYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAQ 242
Cdd:PRK15082  170 AIFSIPafaRLVRG-NTLVLKQQT--YIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQ 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1542736336 243 LPSPEWGAMLGDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAIN 292
Cdd:PRK15082  247 PPTPEWGAMLNEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALD 296
nikC PRK10417
nickel transporter permease NikC; Provisional
 39-288 6.81e-41

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 142.88  E-value: 6.81e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  39 LVLLCVLGSWFAPYGIDQQFLGYQLLPPSWSRYgevsffLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGI 118
Cdd:PRK10417   16 LALIALTSQWWLPYDPQAIDLPSRLLSPDAQHW------LGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 119 FAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWL---AILPRMVRSvysLVHDELEKEYVVAARL 195
Cdd:PRK10417   90 SAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALshwAWYARMVRS---LVISLRQREFVLAARL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 196 DGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMV 275
Cdd:PRK10417  167 SGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFI 246

                         250
                  ....*....|...
gi 1542736336 276 SVLLVNLLGDGIR 288
Cdd:PRK10417  247 SVMAFNLLGDALR 259
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 17-292 1.86e-24

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 99.91  E-value: 1.86e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  17 RTVW----RNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPPSWsrygEVSFFLGTDDLGRDVLSRLL 92
Cdd:PRK15406   23 RSLWqdarRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDM----ESGHYFGTDSSGRDLLVRVA 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  93 SGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLAILPR 172
Cdd:PRK15406   99 IGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLD 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 173 MVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAML 252
Cdd:PRK15406  179 MARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALL 258

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1542736336 253 GDALELIYVAPWTVMLPGAAIMVSVLLVNLLGDGIRRAIN 292
Cdd:PRK15406  259 SDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 65-290 2.06e-20

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 89.44  E-value: 2.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  65 PPSWSRYgevsffLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSL 144
Cdd:COG4239   116 PPSAENW------LGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPEL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 145 LLAIIVVAFAGPHlthamFAVWLAIL-----PRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTE 219
Cdd:COG4239   190 YLLIILSSIFQPS-----FWLLLGILllfgwMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTF 264

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1542736336 220 ITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYvAPWTVMLPGAAIMVSVLLVNLLGDGIRRA 290
Cdd:COG4239   265 LPFILSGAITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQ-APWLGLSAFVVLALMLSLLVFIGEAVRDA 334
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-277 4.87e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.23  E-value: 4.87e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  98 TVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAG--------PHLTHAMFAVWLAI 169
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILALLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 170 LPRMVRSVYSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFLDLGAqLPSPEWG 249
Cdd:cd06261    84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTG 162

                         170       180
                  ....*....|....*....|....*...
gi 1542736336 250 AMLGDALELIYVAPWTVMLPGAAIMVSV 277
Cdd:cd06261   163 LLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 113-295 1.71e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 113 GLALGIFAGSTHGLR-SAVLNHILDTLLSIPSLLLAIIVVAFAGP----HLTHAMFAVWLAILPRMVRSVYSLVHDELEK 187
Cdd:pfam00528   1 GIPLGIIAALRRGRRlDRLLRPLIDLLQALPSFVLAILLVVIAILsilgHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 188 EYVVAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFL----DLGAQLPSPEWGAMLGDAleliyvap 263
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEI-------- 152

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1542736336 264 wtvMLPGAAIMVSVLLVNLLGDGIRRAINAGV 295
Cdd:pfam00528 153 ---QGPVLAAALILLLLNLLVDILQRLLDPRV 181
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 65-292 3.15e-10

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 60.00  E-value: 3.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  65 PPSWSRYgevsffLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSL 144
Cdd:PRK15021  116 PPSRQNW------LGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 145 LLAIIVVAFAGPH----LTHAMFAVWLAILPrMVRSVYSLVHDeleKEYVVAARLDGATTFNILWFAVLPNIAAGLVTEI 220
Cdd:PRK15021  190 FLIILLSSVVQPNfwwlLAITVLFGWMSLVG-VVRAEFLRTRN---FDYIRAAQALGVSDRSIILRHMLPNAMVATLTFL 265

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1542736336 221 TRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYvAPWTVMLPGAAIMVSVLLVNLLGDGIRRAIN 292
Cdd:PRK15021  266 PFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQ-APWLGITAFLSVAILLSLLIFIGEAVRDAFD 336
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 34-291 2.14e-08

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 53.70  E-value: 2.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  34 YGCIGLVLLCVLGSW-FAPYGID--------QQFLGY--QLLPPSWSRygevsfflgtddlgrdvLSRLLSGAAPTVGGA 102
Cdd:TIGR01097   5 IRIWLLALLVALYVWaFALLGFDlarllagpGQMADLlgRMFPPDWSY-----------------LPRILKALLETLAMA 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 103 FVVTLAAAICGLALGIFAGST---HGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPhlthAMFAVWLAIlprMVRSV-- 177
Cdd:TIGR01097  68 ILGTVLAAVLAVPLALLAARNitpSPWLYGLARLLLNFLRAIPELVWALIFVAAVGL----GPFAGVLAL---AFHTVgf 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 178 ----YSLVHDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVteitrALSMAILDI-----AALGFLDLGAqlpspeW 248
Cdd:TIGR01097 141 lgklFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL-----SYTLYRFEInvraaAVLGLVGAGG------I 209

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1542736336 249 GAMLGDALELIYVApwTVMLPGAAIMVSVLLVNLLGDGIRRAI 291
Cdd:TIGR01097 210 GLELDTAIGLFDYD--EVSAIILVILVVVVIIDLISARLRRRL 250
OppC_N pfam12911
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ...
 16-66 5.06e-08

N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.


Pssm-ID: 463747 [Multi-domain]  Cd Length: 53  Bit Score: 48.56  E-value: 5.06e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1542736336  16 LRTVWRNFYGDTTAMIGFYGCIGLVLLCVLGSWFAPYGIDQQFLGYQLLPP 66
Cdd:pfam12911   3 WQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 37-217 3.36e-06

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 47.38  E-value: 3.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  37 IGLVLLCVLGSWFAPYGIDQ---------QFLGyQLLPPSWSRygevsfflgtddlgrdvLSRLLSGAAPTVGGAFVVTL 107
Cdd:COG3639     4 LALLALLVWSLWGLEFDLGRlidglpnlaDFLS-RFFPPDWSY-----------------LPDLLSALLETLAIALLGTL 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 108 AAAICGLALGIFAGST---HGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWL---AILPRMvrsvYSLV 181
Cdd:COG3639    66 LGAVLALPLAFLAARNlapNPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAIhtiGFLGKL----FAEA 141

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1542736336 182 HDELEKEYVVAARLDGATTFNILWFAVLPNIAAGLV 217
Cdd:COG3639   142 IEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFL 177
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 91-228 8.09e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 46.29  E-value: 8.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  91 LLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRsAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLAIL 170
Cdd:COG0600    59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLR-RLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAF 137

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1542736336 171 PRMVRSVYSLVHdELEKEYVVAARLDGATTFNILWFAVLP----NIAAGLVTEITRALSMAI 228
Cdd:COG0600   138 FPILLNTAAGVR-SVDPELLELARSLGASRWQILRKVVLPaalpYIFTGLRIALGLAWIGLV 198
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 84-218 4.03e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 44.29  E-value: 4.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  84 GRDVLSRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGlrsAVLNHILDTL----LSIPSLLLAIIVV-------- 151
Cdd:COG0601    84 GRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRG---SWLDRLITVLallgISIPSFWLGLLLIllfavklg 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 152 -----------AFAGPHLTH------AMFAVWLAILPRMVRSvySLVhDELEKEYVVAARLDGATTFNILWFAVLPNIAA 214
Cdd:COG0601   161 wlpvsgrvspwEDFLDALRHlilpalTLALGSLAGIARLTRS--SML-EVLGQDYVRTARAKGLSERRVLLRHALRNALI 237


                  ....
gi 1542736336 215 GLVT 218
Cdd:COG0601   238 PVVT 241
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 89-218 3.83e-04

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 41.25  E-value: 3.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  89 SRLLSGAAPTVGGAFVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTLLSIPSLLLAI-IVVAFAGPHLTHAMFAVWL 167
Cdd:COG1177    57 PRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVaLLLLFSALGLSGGLWGLIL 136

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1542736336 168 A----ILPRMVRSVYSLVHdELEKEYVVAARLDGATTFNILWFAVLPNIAAGLVT 218
Cdd:COG1177   137 AhvvfTLPFVVLVVLARLQ-GFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILA 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
103-218 8.52e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.53  E-value: 8.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 103 FVVTLAAAICGLALGIFAGSTHGLRSAVLNHILDTL----LSIPSLLLAI----IVVAFAGPHLTHAMFAVWLA----IL 170
Cdd:COG1178   344 LLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLamlpYAVPGIVLGLglllLFNRPLPLLLYGTLAILVLAyvvrFL 423

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1542736336 171 P---RMVRSVYSLVHDELEKeyvvAARLDGATTFNILWFAVLPNIAAGLVT 218
Cdd:COG1178   424 PfalRSLEAALAQIDPSLEE----AARSLGASPLRTLRRVTLPLLRPGLLA 470
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 94-292 1.40e-03

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 39.53  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  94 GAAPTVGGAFVVTLAAAICGLALGIFAG------STHGLRSAVLNHILDTLLSIPSLLLAIIVVA-FAGPHLTH------ 160
Cdd:TIGR00974  51 GIGPAIVGTLLLTLLAIVIAVPLGIGAAiylaeyANGSRFTKIIRFAVDILAGVPSIVVGLFGYGfFVLTYLGGgfslla 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 161 AMFAVWLAILPRMVRS---VYSLVHDELEKeyvvAARLDGATTFNILWFAVLPNIAAGLVTEITRALSMAILDIAALGFL 237
Cdd:TIGR00974 131 GALALALLILPVIIRTteeALKAVPKDLRE----ASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFT 206

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1542736336 238 DLGAQ-----LPSPEWGA---MLGDALELIYVAPWTVMLPGAAIMVS-VLLVNLLGDGIRRAIN 292
Cdd:TIGR00974 207 AGGSAftppnLFDPFATLpvlIYNLASEGPYVEAQQLAWAAALVLIVlVLLLNLIARLLRRRFK 270
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 133-218 3.09e-03

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 38.54  E-value: 3.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336 133 HILDTLLSipsllLAIIVVAFAGPhlthamFAVWlailprMVRSVYSLVHDELEKeyvvAARLDGATTFNILWFAVLPNI 212
Cdd:COG0395   139 GLLNTYWG-----LILPYLAFGLP------FGIF------LLRQFFRSIPRELEE----AARIDGASEFRIFWRIVLPLS 197


                  ....*.
gi 1542736336 213 AAGLVT 218
Cdd:COG0395   198 KPALAT 203
PRK10160 PRK10160
taurine ABC transporter permease TauC;
96-210 9.39e-03

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 37.07  E-value: 9.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1542736336  96 APTVGGAFVVTLAAAICGLALGIFAGSTHGLRsAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLAILPRMVR 175
Cdd:PRK10160   81 AASLTRIVLALLAAVVIGIPVGIAMGLSPTVR-GILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAM 159

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1542736336 176 SVYSLVHdELEKEYVVAARLDGATTFNILWFAVLP 210
Cdd:PRK10160  160 SALAGVK-SAQQVRIRAAQSLGASRAQVLWFVILP 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH