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Conserved domains on  [gi|1549036943|gb|RVE07254|]
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relaxosome protein TraY [Escherichia coli]

Protein Classification

PRK13740 and TraY domain-containing protein( domain architecture ID 11486829)

PRK13740 and TraY domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
1-126 1.71e-29

conjugal transfer relaxosome protein TraY;


:

Pssm-ID: 184292  Cd Length: 70  Bit Score: 101.78  E-value: 1.71e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549036943   1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRypkfnragniygkslvkyltmrlddetnq 80
Cdd:PRK13740    1 MKRRNTRPAPGRKVSLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKR----------------------------- 51

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1549036943  81 lliaaknrsgwcktdeaadrvidhlikFPDFYNSEIFREADKEEDI 126
Cdd:PRK13740   52 ---------------------------FPDFYNSEIFREVAEETES 70
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 70-118 1.26e-18

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


:

Pssm-ID: 428502  Cd Length: 49  Bit Score: 73.44  E-value: 1.26e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1549036943  70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFR 118
Cdd:pfam05509   1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
1-126 1.71e-29

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 101.78  E-value: 1.71e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549036943   1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRypkfnragniygkslvkyltmrlddetnq 80
Cdd:PRK13740    1 MKRRNTRPAPGRKVSLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKR----------------------------- 51

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1549036943  81 lliaaknrsgwcktdeaadrvidhlikFPDFYNSEIFREADKEEDI 126
Cdd:PRK13740   52 ---------------------------FPDFYNSEIFREVAEETES 70
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 70-118 1.26e-18

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 73.44  E-value: 1.26e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1549036943  70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFR 118
Cdd:pfam05509   1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 14-62 1.59e-09

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 49.94  E-value: 1.59e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1549036943  14 VKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGNIY 62
Cdd:pfam05509   1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
1-126 1.71e-29

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 101.78  E-value: 1.71e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549036943   1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRypkfnragniygkslvkyltmrlddetnq 80
Cdd:PRK13740    1 MKRRNTRPAPGRKVSLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKR----------------------------- 51

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1549036943  81 lliaaknrsgwcktdeaadrvidhlikFPDFYNSEIFREADKEEDI 126
Cdd:PRK13740   52 ---------------------------FPDFYNSEIFREVAEETES 70
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 70-118 1.26e-18

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 73.44  E-value: 1.26e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1549036943  70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFR 118
Cdd:pfam05509   1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 14-62 1.59e-09

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 49.94  E-value: 1.59e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1549036943  14 VKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGNIY 62
Cdd:pfam05509   1 VTLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEKRE 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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