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Conserved domains on  [gi|1549558527|gb|RVI76534|]
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XRE family transcriptional regulator [Sinorhizobium meliloti]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 14302731)

helix-turn-helix (HTH) transcriptional regulator containing a XRE (Xenobiotic Response Element) family HTH domain and a MmyB-like transcription regulator ligand binding domain, may control the expression of genes involved in stress response

Gene Ontology:  GO:0003677|GO:0006355|GO:0003700
PubMed:  10473770|15808743|10556324

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-60 1.80e-15

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


:

Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 69.64  E-value: 1.80e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:COG1396     6 KALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLETLLKLAKALGVSLDE 65
MLTR_LBD pfam17765
MmyB-like transcription regulator ligand binding domain; This domain is found in a family of ...
 92-255 8.12e-15

MmyB-like transcription regulator ligand binding domain; This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.


:

Pssm-ID: 465492  Cd Length: 168  Bit Score: 70.29  E-value: 8.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527  92 AIRLMLDRHDPYPGLVFDHQYTVLLTNPAFQALVDATGVPFKPGENFLDGFLGAESVRSLVVNWEAAAADLVQRVRMEAw 171
Cdd:pfam17765   4 ALRRLLDALEPTPAFVLDRRWDVLAWNRLARALFGDFAALPPPERNLLRLLFLDPGARELYVDWEEVARDLVARLRAAA- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527 172 lqgPRSPLQRRLNRLVAD-----PAVAVAIENFPATDRlPVLPIELRLGDA-ALSFITTlsTFGSTQDALVEgVLIESFF 245
Cdd:pfam17765  83 ---GRHPDDPRLAALVGElsarsPEFRRLWARHDVRAR-TSGTKRFRHPVVgELTLDYE--TLGLPDDPGLE-LVVYTAE 155

                         170
                  ....*....|
gi 1549558527 246 PADDATRRFF 255
Cdd:pfam17765 156 PGDPSAAAAL 165
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-60 1.80e-15

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 69.64  E-value: 1.80e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:COG1396     6 KALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLETLLKLAKALGVSLDE 65
MLTR_LBD pfam17765
MmyB-like transcription regulator ligand binding domain; This domain is found in a family of ...
 92-255 8.12e-15

MmyB-like transcription regulator ligand binding domain; This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.


Pssm-ID: 465492  Cd Length: 168  Bit Score: 70.29  E-value: 8.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527  92 AIRLMLDRHDPYPGLVFDHQYTVLLTNPAFQALVDATGVPFKPGENFLDGFLGAESVRSLVVNWEAAAADLVQRVRMEAw 171
Cdd:pfam17765   4 ALRRLLDALEPTPAFVLDRRWDVLAWNRLARALFGDFAALPPPERNLLRLLFLDPGARELYVDWEEVARDLVARLRAAA- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527 172 lqgPRSPLQRRLNRLVAD-----PAVAVAIENFPATDRlPVLPIELRLGDA-ALSFITTlsTFGSTQDALVEgVLIESFF 245
Cdd:pfam17765  83 ---GRHPDDPRLAALVGElsarsPEFRRLWARHDVRAR-TSGTKRFRHPVVgELTLDYE--TLGLPDDPGLE-LVVYTAE 155

                         170
                  ....*....|
gi 1549558527 246 PADDATRRFF 255
Cdd:pfam17765 156 PGDPSAAAAL 165
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 4-60 2.19e-13

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 63.34  E-value: 2.19e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1549558527   4 GSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:cd00093     1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSLDE 57
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
6-60 2.43e-11

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 57.53  E-value: 2.43e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1549558527    6 RLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDE 55
HTH_19 pfam12844
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ...
 4-69 2.16e-10

Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.


Pssm-ID: 463728 [Multi-domain]  Cd Length: 64  Bit Score: 55.37  E-value: 2.16e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1549558527   4 GSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPAREqgtLFTAAG 69
Cdd:pfam12844   1 GERLRKAREERGLTQEELAERLGISRSQLSAIENGKSVPPAETLYKIAELLGVPANW---LLQGEG 63
PRK08154 PRK08154
anaerobic benzoate catabolism transcriptional regulator; Reviewed
 1-60 2.93e-06

anaerobic benzoate catabolism transcriptional regulator; Reviewed


Pssm-ID: 236167 [Multi-domain]  Cd Length: 309  Bit Score: 47.64  E-value: 2.93e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:PRK08154   27 AALGERVRTLRARRGMSRKVLAQASGVSERYLAQLESGQGNVSILLLRRVARALGCSLAD 86
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-60 1.80e-15

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 69.64  E-value: 1.80e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:COG1396     6 KALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLETLLKLAKALGVSLDE 65
MLTR_LBD pfam17765
MmyB-like transcription regulator ligand binding domain; This domain is found in a family of ...
 92-255 8.12e-15

MmyB-like transcription regulator ligand binding domain; This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.


Pssm-ID: 465492  Cd Length: 168  Bit Score: 70.29  E-value: 8.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527  92 AIRLMLDRHDPYPGLVFDHQYTVLLTNPAFQALVDATGVPFKPGENFLDGFLGAESVRSLVVNWEAAAADLVQRVRMEAw 171
Cdd:pfam17765   4 ALRRLLDALEPTPAFVLDRRWDVLAWNRLARALFGDFAALPPPERNLLRLLFLDPGARELYVDWEEVARDLVARLRAAA- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527 172 lqgPRSPLQRRLNRLVAD-----PAVAVAIENFPATDRlPVLPIELRLGDA-ALSFITTlsTFGSTQDALVEgVLIESFF 245
Cdd:pfam17765  83 ---GRHPDDPRLAALVGElsarsPEFRRLWARHDVRAR-TSGTKRFRHPVVgELTLDYE--TLGLPDDPGLE-LVVYTAE 155

                         170
                  ....*....|
gi 1549558527 246 PADDATRRFF 255
Cdd:pfam17765 156 PGDPSAAAAL 165
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
1-60 7.76e-14

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 64.87  E-value: 7.76e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:COG1476     3 KKLGNRLKELRKERGLTQEELAELLGVSRQTISAIENGKYNPSLELALKIARALGVSLEE 62
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 4-60 2.19e-13

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 63.34  E-value: 2.19e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1549558527   4 GSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:cd00093     1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSLDE 57
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
6-60 2.43e-11

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 57.53  E-value: 2.43e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1549558527    6 RLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDE 55
HTH_19 pfam12844
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ...
 4-69 2.16e-10

Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.


Pssm-ID: 463728 [Multi-domain]  Cd Length: 64  Bit Score: 55.37  E-value: 2.16e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1549558527   4 GSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPAREqgtLFTAAG 69
Cdd:pfam12844   1 GERLRKAREERGLTQEELAERLGISRSQLSAIENGKSVPPAETLYKIAELLGVPANW---LLQGEG 63
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 7-60 2.72e-10

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 54.85  E-value: 2.72e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1549558527   7 LKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLDE 54
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 2-60 8.29e-10

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 53.79  E-value: 8.29e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1549558527   2 EFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:COG1813    12 DYGERIREAREARGLSQEELAEKLGVSESTIRRIERGEATPSLDTLRKLEKALGISLAE 70
AF2118 COG3620
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ...
 1-64 4.21e-08

Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];


Pssm-ID: 442838 [Multi-domain]  Cd Length: 95  Bit Score: 49.63  E-value: 4.21e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLD-----VPAREQGTL 64
Cdd:COG3620    16 DTLGEALRLMRKELGLSQLPVAELVGVSQSDILRIESGKRDPTVSTLEKIAEALGkelsaVLVVDDGKL 84
HTH_31 pfam13560
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 2-60 1.44e-07

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433309 [Multi-domain]  Cd Length: 64  Bit Score: 47.52  E-value: 1.44e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   2 EFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGR-SKPSEGMILRLASVLDVPARE 60
Cdd:pfam13560   1 ELGARLRRLRERAGLSQEALARRLGVSRSTLSRLETGRrGRPSPAVVERLARALGVDGAE 60
PRK08154 PRK08154
anaerobic benzoate catabolism transcriptional regulator; Reviewed
 1-60 2.93e-06

anaerobic benzoate catabolism transcriptional regulator; Reviewed


Pssm-ID: 236167 [Multi-domain]  Cd Length: 309  Bit Score: 47.64  E-value: 2.93e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPARE 60
Cdd:PRK08154   27 AALGERVRTLRARRGMSRKVLAQASGVSERYLAQLESGQGNVSILLLRRVARALGCSLAD 86
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 1-60 4.15e-06

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 43.64  E-value: 4.15e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSK------PSEGMILRLASVLDVPARE 60
Cdd:COG1426     4 ETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDalpgpvYVRGFLRSYARALGLDPEE 69
VapI COG3093
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ...
 14-59 1.31e-04

Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms];


Pssm-ID: 442327 [Multi-domain]  Cd Length: 87  Bit Score: 39.79  E-value: 1.31e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1549558527  14 RRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVPAR 59
Cdd:COG3093    21 LGLSQTELAKALGVSRQRISEILNGKRAITADTALRLARAFGTSAE 66
HTH_26 pfam13443
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ...
 6-56 2.18e-04

Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433211 [Multi-domain]  Cd Length: 63  Bit Score: 38.68  E-value: 2.18e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549558527   6 RLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSK-PSEGMILRLASVLDV 56
Cdd:pfam13443   1 KLRKLMADRGISKSDLARATGISRATLSRLRKGKPKrVSLDTLDKICDALGC 52
PHA01976 PHA01976
helix-turn-helix protein
 1-56 1.54e-03

helix-turn-helix protein


Pssm-ID: 177330 [Multi-domain]  Cd Length: 67  Bit Score: 36.47  E-value: 1.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1549558527   1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDV 56
Cdd:PHA01976    1 MSFAIQLIKARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGV 56
YozG COG3655
DNA-binding transcriptional regulator, XRE family [Transcription];
6-56 1.97e-03

DNA-binding transcriptional regulator, XRE family [Transcription];


Pssm-ID: 442872 [Multi-domain]  Cd Length: 69  Bit Score: 35.89  E-value: 1.97e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549558527   6 RLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSK-PSEGMILRLASVLDV 56
Cdd:COG3655     5 KLDELLAERGMTKKELAEATGISRATLSRLKNGKAKaVRLDTLEKICKALDC 56
PRK09706 PRK09706
transcriptional repressor DicA; Reviewed
 3-54 5.31e-03

transcriptional repressor DicA; Reviewed


Pssm-ID: 182039 [Multi-domain]  Cd Length: 135  Bit Score: 36.37  E-value: 5.31e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549558527   3 FGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVL 54
Cdd:PRK09706    6 LGQRIRYRRKQLKLSQRSLAKAVKVSHVSISQWERDETEPTGKNLFALAKAL 57
PRK13355 PRK13355
bifunctional HTH-domain containing protein/aminotransferase; Provisional
 3-58 5.56e-03

bifunctional HTH-domain containing protein/aminotransferase; Provisional


Pssm-ID: 237361 [Multi-domain]  Cd Length: 517  Bit Score: 37.79  E-value: 5.56e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1549558527   3 FGSRLKEWRGHRRMSQLDLAMAAG-----ISARHLSFLETGRSKPSEGMILRLASVLDVPA 58
Cdd:PRK13355    4 FAERLKQAMKARGLKQEDLVHAAEargvkLGKSHISQYVSGKTGPRRDVLPFLAAILGVSE 64
COG1395 COG1395
Predicted transcriptional regulator [Transcription];
4-57 5.63e-03

Predicted transcriptional regulator [Transcription];


Pssm-ID: 441005 [Multi-domain]  Cd Length: 313  Bit Score: 37.51  E-value: 5.63e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1549558527   4 GSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSEGMILRLASVLDVP 57
Cdd:COG1395   129 GEKLRELREERGLSLGELASELGVSRRTISKYERGEMDASIEVALKLEEILGEP 182
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
4-55 6.30e-03

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 34.52  E-value: 6.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549558527   4 GSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSKPSeGMILRLASVLD 55
Cdd:COG2944     8 PEEIRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRKPS-GAALKLLRLLE 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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