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Conserved domains on  [gi|1549734183|gb|RVK43239|]
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DUF2950 family protein [Sinorhizobium meliloti]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2950 super family cl12977
Protein of unknown function (DUF2950); This is a bacterial family of uncharacterized proteins.
 1-52 6.78e-22

Protein of unknown function (DUF2950); This is a bacterial family of uncharacterized proteins.


The actual alignment was detected with superfamily member pfam11453:

Pssm-ID: 431889  Cd Length: 274  Bit Score: 84.21  E-value: 6.78e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549734183   1 MVAWPVRYGVTRVKTFVVNRNGIVYEADLGEDTEKTAAAIRTFNPNDYWAVV 52
Cdd:pfam11453 223 LVAWPAEYGDTGVMSFIVNQDGQVYEKDLGPDTAAIAKAMKAFDPDPGWKKV 274
 
Name Accession Description Interval E-value
DUF2950 pfam11453
Protein of unknown function (DUF2950); This is a bacterial family of uncharacterized proteins.
 1-52 6.78e-22

Protein of unknown function (DUF2950); This is a bacterial family of uncharacterized proteins.


Pssm-ID: 431889  Cd Length: 274  Bit Score: 84.21  E-value: 6.78e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549734183   1 MVAWPVRYGVTRVKTFVVNRNGIVYEADLGEDTEKTAAAIRTFNPNDYWAVV 52
Cdd:pfam11453 223 LVAWPAEYGDTGVMSFIVNQDGQVYEKDLGPDTAAIAKAMKAFDPDPGWKKV 274
 
Name Accession Description Interval E-value
DUF2950 pfam11453
Protein of unknown function (DUF2950); This is a bacterial family of uncharacterized proteins.
 1-52 6.78e-22

Protein of unknown function (DUF2950); This is a bacterial family of uncharacterized proteins.


Pssm-ID: 431889  Cd Length: 274  Bit Score: 84.21  E-value: 6.78e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1549734183   1 MVAWPVRYGVTRVKTFVVNRNGIVYEADLGEDTEKTAAAIRTFNPNDYWAVV 52
Cdd:pfam11453 223 LVAWPAEYGDTGVMSFIVNQDGQVYEKDLGPDTAAIAKAMKAFDPDPGWKKV 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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