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Conserved domains on  [gi|1550291785|gb|RVP60648|]
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transposase family protein, partial [Sinorhizobium meliloti]

Protein Classification

transposase( domain architecture ID 10009281)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0006313|GO:0003677|GO:0004803|GO:0046872|GO:0032196|GO:0015074|GO:0006310
PubMed:  11774877|20215432|20885819

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YhhI COG5433
Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons];
1-71 3.50e-22

Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons];


:

Pssm-ID: 444184 [Multi-domain]  Cd Length: 331  Bit Score: 86.58  E-value: 3.50e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1550291785   1 QIENNLHWVLDVHFREDAARNRKDNGPQNIAFFRKIALNLLRSHPD-KASIRRKIKKAGWDDQFLTSLIAHM 71
Cdd:COG5433   260 GIENKLHWVLDVVFREDASRIRSGNAPENFACLRRIALNLLRQDGDyKLSIKGKRKRAAWDDDYLLKLLFGK 331
 
Name Accession Description Interval E-value
YhhI COG5433
Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons];
1-71 3.50e-22

Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons];


Pssm-ID: 444184 [Multi-domain]  Cd Length: 331  Bit Score: 86.58  E-value: 3.50e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1550291785   1 QIENNLHWVLDVHFREDAARNRKDNGPQNIAFFRKIALNLLRSHPD-KASIRRKIKKAGWDDQFLTSLIAHM 71
Cdd:COG5433   260 GIENKLHWVLDVVFREDASRIRSGNAPENFACLRRIALNLLRQDGDyKLSIKGKRKRAAWDDDYLLKLLFGK 331
transpos_ISAs1 NF033564
ISAs1 family transposase;
1-41 8.63e-21

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 82.59  E-value: 8.63e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1550291785   1 QIENNLHWVLDVHFREDAARNRKDNGPQNIAFFRKIALNLL 41
Cdd:NF033564  274 GIENSLHWVLDVVFREDASRIRKGNAAENLALLRHIALNLL 314
 
Name Accession Description Interval E-value
YhhI COG5433
Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons];
1-71 3.50e-22

Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons];


Pssm-ID: 444184 [Multi-domain]  Cd Length: 331  Bit Score: 86.58  E-value: 3.50e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1550291785   1 QIENNLHWVLDVHFREDAARNRKDNGPQNIAFFRKIALNLLRSHPD-KASIRRKIKKAGWDDQFLTSLIAHM 71
Cdd:COG5433   260 GIENKLHWVLDVVFREDASRIRSGNAPENFACLRRIALNLLRQDGDyKLSIKGKRKRAAWDDDYLLKLLFGK 331
transpos_ISAs1 NF033564
ISAs1 family transposase;
1-41 8.63e-21

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 82.59  E-value: 8.63e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1550291785   1 QIENNLHWVLDVHFREDAARNRKDNGPQNIAFFRKIALNLL 41
Cdd:NF033564  274 GIENSLHWVLDVVFREDASRIRKGNAAENLALLRHIALNLL 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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