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Conserved domains on  [gi|1550316629|gb|RVP83960|]
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glutamine cyclotransferase [Sinorhizobium meliloti]

Protein Classification

Vgb family protein( domain architecture ID 11468173)

Vgb family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
5-213 1.12e-23

Streptogramin lyase [Defense mechanisms];


:

Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 95.09  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629   5 KAEILQEYGPFPNTGqVAGVTFDGR-HVWFA--SGDRLNALDPESGKTVR---SIDVAAHAGTAFDGE-HLYQ--IAEDR 75
Cdd:COG4257    46 ATGEFTEYPLGGGSG-PHGIAVDPDgNLWFTdnGNNRIGRIDPKTGEITTfalPGGGSNPHGIAFDPDgNLWFtdQGGNR 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  76 IQKIDPATGRVLATIPAPAEGGDSGLAW-AEGTLWVGHYRGRKIHQVDPDTGKI--LRTIESNRVVTGVTWV-DGELWHA 151
Cdd:COG4257   125 IGRLDPATGEVTEFPLPTGGAGPYGIAVdPDGNLWVTDFGANAIGRIDPDTGTLteYALPTPGAGPRGLAVDpDGNLWVA 204

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1550316629 152 TWEGdeSDLRRLDPETGEVLETLEMPPGVGVSGLESDGGDRFYCGGGSSGKVRAVRRPSRVS 213
Cdd:COG4257   205 DTGS--GRIGRFDPKTGTVTEYPLPGGGARPYGVAVDGDGRVWFAESGANRIVRFDPDTELT 264
 
Name Accession Description Interval E-value
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
5-213 1.12e-23

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 95.09  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629   5 KAEILQEYGPFPNTGqVAGVTFDGR-HVWFA--SGDRLNALDPESGKTVR---SIDVAAHAGTAFDGE-HLYQ--IAEDR 75
Cdd:COG4257    46 ATGEFTEYPLGGGSG-PHGIAVDPDgNLWFTdnGNNRIGRIDPKTGEITTfalPGGGSNPHGIAFDPDgNLWFtdQGGNR 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  76 IQKIDPATGRVLATIPAPAEGGDSGLAW-AEGTLWVGHYRGRKIHQVDPDTGKI--LRTIESNRVVTGVTWV-DGELWHA 151
Cdd:COG4257   125 IGRLDPATGEVTEFPLPTGGAGPYGIAVdPDGNLWVTDFGANAIGRIDPDTGTLteYALPTPGAGPRGLAVDpDGNLWVA 204

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1550316629 152 TWEGdeSDLRRLDPETGEVLETLEMPPGVGVSGLESDGGDRFYCGGGSSGKVRAVRRPSRVS 213
Cdd:COG4257   205 DTGS--GRIGRFDPKTGTVTEYPLPGGGARPYGVAVDGDGRVWFAESGANRIVRFDPDTELT 264
Glu_cyclase_2 pfam05096
Glutamine cyclotransferase; This family of enzymes EC:2.3.2.5 catalyze the cyclization of free ...
 6-110 1.94e-07

Glutamine cyclotransferase; This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.


Pssm-ID: 428301 [Multi-domain]  Cd Length: 249  Bit Score: 49.89  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629   6 AEILQEYGPFPNTGQVAGVTFDGRHVWFASG-DRLNALDPESGKTVRSIDVAAhagtafDGEHLYQIAE----------- 73
Cdd:pfam05096 110 AATLEEIGRFSYEGEGWGLTTDGKRLIMSDGsSTLTFRDPKTFAETGTVQVTD------DGRPVRNLNEleyvkgeiyan 183

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1550316629  74 ----DRIQKIDPATGRVLATI-------PAPAEGGDS---GLAW--AEGTLWV 110
Cdd:pfam05096 184 vwqtDRIARIDPATGRVTGWIdlsglrnEAAPAGAEDvlnGIAYdpATDRFFV 236
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 35-92 9.28e-03

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 36.17  E-value: 9.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1550316629  35 SGDRLNALDPESGKTVRSIDVAAHA-GTAF--DGEHLYQIA--EDRIQKIDPATGRVLATIPA 92
Cdd:TIGR03866  19 KDNTISVIDTATLKVTRTFPVGQRPrGITFskDGKLLYVCAsdSDTIQVIDPATGEVLHTLPS 81
 
Name Accession Description Interval E-value
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
5-213 1.12e-23

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 95.09  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629   5 KAEILQEYGPFPNTGqVAGVTFDGR-HVWFA--SGDRLNALDPESGKTVR---SIDVAAHAGTAFDGE-HLYQ--IAEDR 75
Cdd:COG4257    46 ATGEFTEYPLGGGSG-PHGIAVDPDgNLWFTdnGNNRIGRIDPKTGEITTfalPGGGSNPHGIAFDPDgNLWFtdQGGNR 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  76 IQKIDPATGRVLATIPAPAEGGDSGLAW-AEGTLWVGHYRGRKIHQVDPDTGKI--LRTIESNRVVTGVTWV-DGELWHA 151
Cdd:COG4257   125 IGRLDPATGEVTEFPLPTGGAGPYGIAVdPDGNLWVTDFGANAIGRIDPDTGTLteYALPTPGAGPRGLAVDpDGNLWVA 204

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1550316629 152 TWEGdeSDLRRLDPETGEVLETLEMPPGVGVSGLESDGGDRFYCGGGSSGKVRAVRRPSRVS 213
Cdd:COG4257   205 DTGS--GRIGRFDPKTGTVTEYPLPGGGARPYGVAVDGDGRVWFAESGANRIVRFDPDTELT 264
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
12-143 1.15e-10

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 59.32  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  12 YGPFPNTGQVAGVTFDGRHVWFAS--GDRLNALDPESGKTVRSIDVAAH-AGTAF--DGEHLY--QIAEDRIQKIDPATG 84
Cdd:COG3391    63 GAAAVADADGADAGADGRRLYVANsgSGRVSVIDLATGKVVATIPVGGGpRGLAVdpDGGRLYvaDSGNGRVSVIDTATG 142

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1550316629  85 RVLATIPAPAEGgdSGLAW--AEGTLWVGHYRGRKIHQV----DPDTGKILRTIESNRVVTGVTW 143
Cdd:COG3391   143 KVVATIPVGAGP--HGIAVdpDGKRLYVANSGSNTVSVIvsviDTATGKVVATIPVGGGPVGVAV 205
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
15-213 1.63e-10

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 58.55  E-value: 1.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  15 FPNTGQVAGVTFDGRHVWFASGDRLNALDPESGKTVRSIDVAAHAGTAFDGEHLY--QIAEDRIQKIDPATGRVLATIPA 92
Cdd:COG3391    29 GLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYvaNSGSGRVSVIDLATGKVVATIPV 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  93 PAEGGDSGLAWAEGTLWVGHYRGRKIHQVDPDTGKILRTIESNRVVTGVTW--VDGELWHATWEGDE--SDLRRLDPETG 168
Cdd:COG3391   109 GGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVGAGPHGIAVdpDGKRLYVANSGSNTvsVIVSVIDTATG 188

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1550316629 169 EVLETLemPPGVGVSGLE-SDGGDRFYCGGGSSGkvRAVRRPSRVS 213
Cdd:COG3391   189 KVVATI--PVGGGPVGVAvSPDGRRLYVANRGSN--TSNGGSNTVS 230
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
72-206 2.71e-08

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 52.71  E-value: 2.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  72 AEDRIQKIDPATGRVlATIPAPAEGGDSGLAW-AEGTLWVGHYRGRKIHQVDPDTGKILRTI--ESNRVVTGVTW-VDGE 147
Cdd:COG4257    36 GGGRIGRLDPATGEF-TEYPLGGGSGPHGIAVdPDGNLWFTDNGNNRIGRIDPKTGEITTFAlpGGGSNPHGIAFdPDGN 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1550316629 148 LWHAtwEGDESDLRRLDPETGEVLETLEMPPGVGVSGLESDGGDRFYCGGGSSGKVRAV 206
Cdd:COG4257   115 LWFT--DQGGNRIGRLDPATGEVTEFPLPTGGAGPYGIAVDPDGNLWVTDFGANAIGRI 171
COG3823 COG3823
Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones];
9-110 1.16e-07

Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443035 [Multi-domain]  Cd Length: 237  Bit Score: 50.54  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629   9 LQEYGPFPNTGQVAGVTFDGRHVWFASG-DRLNALDPESGKTVRSIDVAAHaGTAF---------DGE---HLYQiaEDR 75
Cdd:COG3823   101 FELLGTFPYPGEGWGLTNDGKRLIMSDGsSTLRFLDPETFAEVRTIQVTDN-GRPVdrlneleyvDGKiyaNVWQ--TDR 177

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1550316629  76 IQKIDPATGRVLATI-------PAPAEGGDS---GLAW--AEGTLWV 110
Cdd:COG3823   178 IVRIDPATGAVTGVIdlsgllpEVKRTPGEDvlnGIAYdpETDRLFV 224
Glu_cyclase_2 pfam05096
Glutamine cyclotransferase; This family of enzymes EC:2.3.2.5 catalyze the cyclization of free ...
 6-110 1.94e-07

Glutamine cyclotransferase; This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.


Pssm-ID: 428301 [Multi-domain]  Cd Length: 249  Bit Score: 49.89  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629   6 AEILQEYGPFPNTGQVAGVTFDGRHVWFASG-DRLNALDPESGKTVRSIDVAAhagtafDGEHLYQIAE----------- 73
Cdd:pfam05096 110 AATLEEIGRFSYEGEGWGLTTDGKRLIMSDGsSTLTFRDPKTFAETGTVQVTD------DGRPVRNLNEleyvkgeiyan 183

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1550316629  74 ----DRIQKIDPATGRVLATI-------PAPAEGGDS---GLAW--AEGTLWV 110
Cdd:pfam05096 184 vwqtDRIARIDPATGRVTGWIdlsglrnEAAPAGAEDvlnGIAYdpATDRFFV 236
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
30-170 2.01e-06

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 47.68  E-value: 2.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  30 HVWFAS-GDRLNALDPESGK------------TVRSIDVAAH----AGTAFDGEHLYQIAEDRIQKIDPATGRVLATIPA 92
Cdd:COG3292   283 RLWIGTyGGGLFRLDPKTGKfkrynpnglpsnSVYSILEDSDgnlwIGTSGGGLYRYDPKTGKFTKFSEDNGLSNNFIRS 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  93 PAEGGDsglawaeGTLWVGHYRGrkIHQVDPDTGKILR--------TIESNRVVTGVTWVDGELWHATwegDESDLRRLD 164
Cdd:COG3292   363 ILEDSD-------GNLWVGTNGG--LYRLDPKTGKFTNfthdpdknGLSSNYINSIFEDSDGRLWIGT---DGGGLYRYD 430


                  ....*.
gi 1550316629 165 PETGEV 170
Cdd:COG3292   431 PKTGKF 436
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 17-129 3.62e-06

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 46.24  E-value: 3.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  17 NTGQVAGVTFDGRHVWFASG-DRLNALDPESGKTVRSIDVAAHAGTA--FDGEHLYQIAED-RIQKIDPATGRVL----A 88
Cdd:pfam13360  22 ETGLGGGVAVDGGRLFVATGgGQLVALDAATGKLLWRQTLSGEVLGAplVAGGRVFVVAGDgSLIALDAADGRRLwsyqR 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1550316629  89 TIPAPAEGGDSGLAWAEGTLWVGHYRGrKIHQVDPDTGKIL 129
Cdd:pfam13360 102 SGEPLALRSSGSPAVVGDTVVAGFSSG-KLVALDPATGKVR 141
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 72-208 1.02e-05

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 44.70  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  72 AEDRIQKIDPATGRVLATIpAPAEGGDSGLAWAEGTLWVGHYRGRkIHQVDPDTGKIL-RTIESNRVVTGVTWVDGELWH 150
Cdd:pfam13360   1 ADGVVTALDAATGAELWRV-DLETGLGGGVAVDGGRLFVATGGGQ-LVALDAATGKLLwRQTLSGEVLGAPLVAGGRVFV 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1550316629 151 ATweGDESdLRRLDPETGEVLETLEMPPG---VGVSGLESDGGDRFYCgGGSSGKVRAVRR 208
Cdd:pfam13360  79 VA--GDGS-LIALDAADGRRLWSYQRSGEplaLRSSGSPAVVGDTVVA-GFSSGKLVALDP 135
COG3823 COG3823
Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones];
49-176 2.84e-05

Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443035 [Multi-domain]  Cd Length: 237  Bit Score: 43.61  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  49 TVRSIDVAAHAGTAF------DGEHLY----QIAEDRIQKIDPATGRVLATIPAP----AEG----GDS--GLAWAEGTL 108
Cdd:COG3823    14 TYEVVNTYPHDPTAFtqglefHDGTLYestgLYGQSSLRKVDLETGEVLQRVDLPdryfGEGitilGDKlyQLTWQSGVG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629 109 WV-----------GHYRGR------------------KIHQVDPDTGKILRTIEsnrVVTG---VT------WVDGELWH 150
Cdd:COG3823    94 FVydlatfellgtFPYPGEgwgltndgkrlimsdgssTLRFLDPETFAEVRTIQ---VTDNgrpVDrlneleYVDGKIYA 170

                         170       180
                  ....*....|....*....|....*.
gi 1550316629 151 ATWEGDesDLRRLDPETGEVLETLEM 176
Cdd:COG3823   171 NVWQTD--RIVRIDPATGAVTGVIDL 194
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
 64-143 4.59e-05

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 42.96  E-value: 4.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  64 DGEHLYqIAE---DRIQKID------PATGRVLATIPAPAEGGDsGLAW-AEGTLWVGHYRGRKIHQVDPDtGKILRTIE 133
Cdd:COG3386   147 DGRTLY-VADtgaGRIYRFDldadgtLGNRRVFADLPDGPGGPD-GLAVdADGNLWVALWGGGGVVRFDPD-GELLGRIE 223

                          90
                  ....*....|.
gi 1550316629 134 S-NRVVTGVTW 143
Cdd:COG3386   224 LpERRPTNVAF 234
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
104-204 1.67e-04

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 41.54  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629 104 AEGTLWVGHYRGRKIHQVDPDTGKILR-TIESNRVVTGVTW-VDGELWHATWEGDesDLRRLDPETGEVlETLEMPPGVG 181
Cdd:COG4257    26 PDGAVWFTDQGGGRIGRLDPATGEFTEyPLGGGSGPHGIAVdPDGNLWFTDNGNN--RIGRIDPKTGEI-TTFALPGGGS 102

                          90       100
                  ....*....|....*....|....
gi 1550316629 182 V-SGLESDGGDRFYCGGGSSGKVR 204
Cdd:COG4257   103 NpHGIAFDPDGNLWFTDQGGNRIG 126
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
 100-196 1.67e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 41.42  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629 100 GLAW-AEGTLWVGHYRGRKIHQVDPDTGKILRTIESNRVVTGVTWV-DGELWHAtweGDESDLRRLDPETGEVlETLEMP 177
Cdd:COG3386    12 GPVWdPDGRLYWVDIPGGRIHRYDPDGGAVEVFAEPSGRPNGLAFDpDGRLLVA---DHGRGLVRFDPADGEV-TVLADE 87

                          90       100
                  ....*....|....*....|..
gi 1550316629 178 PGVGVSG---LESDGGDRFYCG 196
Cdd:COG3386    88 YGKPLNRpndGVVDPDGRLYFT 109
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
 71-128 3.11e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 40.65  E-value: 3.11e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1550316629  71 IAEDRIQKIDPATGRVlaTIPAPAEGGDSGLAW-AEGTLWVGHyRGRKIHQVDPDTGKI 128
Cdd:COG3386    26 IPGGRIHRYDPDGGAV--EVFAEPSGRPNGLAFdPDGRLLVAD-HGRGLVRFDPADGEV 81
Glu_cyclase_2 pfam05096
Glutamine cyclotransferase; This family of enzymes EC:2.3.2.5 catalyze the cyclization of free ...
 33-174 7.51e-04

Glutamine cyclotransferase; This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.


Pssm-ID: 428301 [Multi-domain]  Cd Length: 249  Bit Score: 39.49  E-value: 7.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  33 FASGDRLNALDPESGKTVRSIDVAAHAGTAF------DGEHLY----QIAEDRIQKIDPATGRVLATIPAP----AEG-- 96
Cdd:pfam05096  10 CAAAPAAAAAPPAPVLGYEVVATYPHDPTAFtqgleyDDGVLYestgLYGRSSLRKVDLATGEVLQSVPLPprlfGEGit 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  97 --GDS--GLAWAEGTLWVG-----------HYRGR------------------KIHQVDPDTGKILRTIE---SNRVVTG 140
Cdd:pfam05096  90 llGDKlyQLTWKDGVGFVYdaatleeigrfSYEGEgwglttdgkrlimsdgssTLTFRDPKTFAETGTVQvtdDGRPVRN 169

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1550316629 141 VT---WVDGELWHATWEGDEsdLRRLDPETGEVLETL 174
Cdd:pfam05096 170 LNeleYVKGEIYANVWQTDR--IARIDPATGRVTGWI 204
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
11-201 8.63e-04

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 39.97  E-value: 8.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  11 EYGPFPNTGQVAGVTFDGR-HVWFASGDRLNALDPESGKTVRsidvaaHAGTAFDGEHLYQIAEDR-------------- 75
Cdd:COG3292   116 PLDPGLPNNSIRSIAEDSDgNIWVGTSNGLYRYDPKTGKFKR------FTLDGLPSNTITSLAEDAdgnlwvdsdgnlwi 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  76 ------IQKIDPATGRVLATIPAPAEGGDSGLAW------AEGTLWVGHYRG---------RKIHQVDPDTGKILrtieS 134
Cdd:COG3292   190 gtdgngLYRLDPNTGKFEHITHDPDPNSLSSNSIyslfedREGNLWVGTYGGglnyldpnnSKFKSYRHNDPNGL----S 265

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1550316629 135 NRVVTGVT-------WVdgELWHATWEGdesDLRRLDPETGEVLE-TLEMPPGVGVSGLESDGGDRFYCGGGSSG 201
Cdd:COG3292   266 GNSVRSIAedsdgnlWI--RLWIGTYGG---GLFRLDPKTGKFKRyNPNGLPSNSVYSILEDSDGNLWIGTSGGG 335
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
 18-177 1.87e-03

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 38.33  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  18 TGQVAGVTFD--GRHVWFASGDRLNALDPESGKTVRSID------------VAAHAGTAFDGEHLYQIAEDRIQKIDPA- 82
Cdd:COG3386    48 SGRPNGLAFDpdGRLLVADHGRGLVRFDPADGEVTVLADeygkplnrpndgVVDPDGRLYFTDMGEYLPTGALYRVDPDg 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629  83 TGRVLAT-IPAPaeggdSGLAWA--EGTLWVGHYRGRKIHQVDPDT------GKILRTIESNRVVT-GVTW-VDGELWHA 151
Cdd:COG3386   128 SLRVLADgLTFP-----NGIAFSpdGRTLYVADTGAGRIYRFDLDAdgtlgnRRVFADLPDGPGGPdGLAVdADGNLWVA 202

                         170       180
                  ....*....|....*....|....*.
gi 1550316629 152 TWEGDEsdLRRLDPeTGEVLETLEMP 177
Cdd:COG3386   203 LWGGGG--VVRFDP-DGELLGRIELP 225
COG3292 COG3292
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
104-194 5.40e-03

Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];


Pssm-ID: 442521 [Multi-domain]  Cd Length: 924  Bit Score: 37.28  E-value: 5.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550316629 104 AEGTLWVGHYRGrkIHQVDPDTGKI----LRTIESNRVVTGVTW-VDGELWHATWEGdesdLRRLDPETGEVLE-TLEMP 177
Cdd:COG3292    90 SDGRLWIGTDGG--LSRYDPKTDKFtrypLDPGLPNNSIRSIAEdSDGNIWVGTSNG----LYRYDPKTGKFKRfTLDGL 163

                          90
                  ....*....|....*..
gi 1550316629 178 PGVGVSGLESDGGDRFY 194
Cdd:COG3292   164 PSNTITSLAEDADGNLW 180
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 35-92 9.28e-03

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 36.17  E-value: 9.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1550316629  35 SGDRLNALDPESGKTVRSIDVAAHA-GTAF--DGEHLYQIA--EDRIQKIDPATGRVLATIPA 92
Cdd:TIGR03866  19 KDNTISVIDTATLKVTRTFPVGQRPrGITFskDGKLLYVCAsdSDTIQVIDPATGEVLHTLPS 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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