|
Name |
Accession |
Description |
Interval |
E-value |
| pstC |
PRK11275 |
phosphate ABC transporter permease PstC; |
1-319 |
0e+00 |
|
phosphate ABC transporter permease PstC;
Pssm-ID: 183070 Cd Length: 319 Bit Score: 581.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 1 MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLV 80
Cdd:PRK11275 1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL 160
Cdd:PRK11275 81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALG 240
Cdd:PRK11275 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1559694088 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR 319
Cdd:PRK11275 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
9-317 |
4.32e-115 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 334.37 E-value: 4.32e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 9 NPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLA-FLWTKEWD--APNDIYGALVPIYGTLVTSFIA 85
Cdd:COG0573 10 RRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLLeFLTGTEWNpvSSNGEFGILPLIVGTLLVSLIA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 86 LLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQepvgnimsnipivgalfsGPA 165
Cdd:COG0573 90 LLIAVPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFP------------------WPP 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 166 FGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAV 245
Cdd:COG0573 152 SGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAV 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1559694088 246 TFIIGNTYQLdSASLYMPGNSITSALANEFAEAE-SGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEG 317
Cdd:COG0573 232 LMVAGNAPQI-PFSLFDPGRTLTALIALEFGEAPfGSLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
16-311 |
1.69e-90 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 271.83 E-value: 1.69e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 16 DIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLA-FLWTKEWDAPN----DIYGALVPIYGTLVTSFIALLIAV 90
Cdd:TIGR02138 1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGILnFLTGTVWDPGSgpvqEQYGALPLIVGTLITSLIALLIAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 91 PVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNImsnipivgaLFSGPAFGIGI 170
Cdd:TIGR02138 81 PVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSN---------LGLIPLFGGPI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIG 250
Cdd:TIGR02138 152 LTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559694088 251 NTYQLDSASLYMPGNSITSALANEFAEAESG-LHVAALMELGLILFVITFIVLAASKFMIMR 311
Cdd:TIGR02138 232 NVFPISPLSLFDPGTTITSLIANQFGEASGGsVHTSALFALGLVLFVITLLVNILARYIVRR 293
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
75-272 |
5.04e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 63.84 E-value: 5.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 75 IYGTLVTSFIALLIAVPVSFGIALFLTELaPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAvyfqepvgnimsni 154
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 155 pivgalfsGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLG 234
Cdd:cd06261 66 --------WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137
|
170 180 190
....*....|....*....|....*....|....*...
gi 1559694088 235 LGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALA 272
Cdd:cd06261 138 FARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDL 175
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
154-252 |
9.18e-05 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 42.67 E-value: 9.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 154 IPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIML 233
Cdd:pfam00528 36 AILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLAL 115
|
90
....*....|....*....
gi 1559694088 234 GLGRALGETMAVTFIIGNT 252
Cdd:pfam00528 116 AFGGALGGAVLLEFLGSWP 134
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| pstC |
PRK11275 |
phosphate ABC transporter permease PstC; |
1-319 |
0e+00 |
|
phosphate ABC transporter permease PstC;
Pssm-ID: 183070 Cd Length: 319 Bit Score: 581.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 1 MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLV 80
Cdd:PRK11275 1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL 160
Cdd:PRK11275 81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALG 240
Cdd:PRK11275 161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1559694088 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR 319
Cdd:PRK11275 241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
9-317 |
4.32e-115 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 334.37 E-value: 4.32e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 9 NPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLA-FLWTKEWD--APNDIYGALVPIYGTLVTSFIA 85
Cdd:COG0573 10 RRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLLeFLTGTEWNpvSSNGEFGILPLIVGTLLVSLIA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 86 LLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQepvgnimsnipivgalfsGPA 165
Cdd:COG0573 90 LLIAVPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFP------------------WPP 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 166 FGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAV 245
Cdd:COG0573 152 SGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAV 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1559694088 246 TFIIGNTYQLdSASLYMPGNSITSALANEFAEAE-SGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEG 317
Cdd:COG0573 232 LMVAGNAPQI-PFSLFDPGRTLTALIALEFGEAPfGSLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
16-311 |
1.69e-90 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 271.83 E-value: 1.69e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 16 DIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLA-FLWTKEWDAPN----DIYGALVPIYGTLVTSFIALLIAV 90
Cdd:TIGR02138 1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGILnFLTGTVWDPGSgpvqEQYGALPLIVGTLITSLIALLIAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 91 PVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNImsnipivgaLFSGPAFGIGI 170
Cdd:TIGR02138 81 PVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSN---------LGLIPLFGGPI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIG 250
Cdd:TIGR02138 152 LTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559694088 251 NTYQLDSASLYMPGNSITSALANEFAEAESG-LHVAALMELGLILFVITFIVLAASKFMIMR 311
Cdd:TIGR02138 232 NVFPISPLSLFDPGTTITSLIANQFGEASGGsVHTSALFALGLVLFVITLLVNILARYIVRR 293
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
29-303 |
1.15e-35 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 129.39 E-value: 1.15e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 29 IVLLMLGGIIVSLIISSWPSIqkfGLAFLwTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAP-GW 107
Cdd:COG0581 1 LALLPLVWILGTVLVKGLPAL---SWEFL-TSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARgGR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 108 LKRPLGIAIELLAAIPSIVYGmwgLFIFApLFAVYFQepvgnimsnipivgalfsgpaFGIGILAAGVILAIMIIPYIAA 187
Cdd:COG0581 77 LARLIRFAIDVLAGVPSIVYG---LFGYA-LFVLTLG---------------------LGFSLLAGALALALLMLPVVIR 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 188 VMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLdSASLYMPGNSI 267
Cdd:COG0581 132 TTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFL-PLSLFDPFATL 210
|
250 260 270
....*....|....*....|....*....|....*..
gi 1559694088 268 TSALANEFAEA-ESGLHVAALMELGLILFVITFIVLA 303
Cdd:COG0581 211 PVHIYNLASSPyPAAQELAWAAALVLLLLVLLLNLLA 247
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
16-253 |
1.30e-27 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 108.48 E-value: 1.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 16 DIIFSVLVKLAALIVLLMLGGIIVSLIISSWPSIqkfGLAFLwTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFG 95
Cdd:TIGR00974 1 DKIFTFISLLSALLALLPLIWILWYILIKGLPAL---NLEFF-TKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 96 IALFLTELA-PGWLKRPLGIAIELLAAIPSIVYGmwgLFIFAPLFAVYFqepvgnimsnipivgalfsgpAFGIGILAAG 174
Cdd:TIGR00974 77 AAIYLAEYAnGSRFTKIIRFAVDILAGVPSIVVG---LFGYGFFVLTYL---------------------GGGFSLLAGA 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1559694088 175 VILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTY 253
Cdd:TIGR00974 133 LALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSA 211
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
18-253 |
7.86e-14 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 70.16 E-value: 7.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 18 IFSVLVKLAALIVLLMLGGIIVSLIISSWpsiqKFGLAFLWTKEWDApndiyGALVPIYGTLVTSFIALLIAVPVSFGIA 97
Cdd:COG0555 8 GFGLTLGLTLLYLSLIVLLPLAALVLKAA----GLGWAEFWAVLTSP-----RVLAALKLSLGTALIAALINLVFGLPLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 98 LFLTELaPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLfavyfqepvgnimsniPIVGALFSgpAFGIGIL--AAGV 175
Cdd:COG0555 79 WVLVRY-RFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN----------------GWLGQLLA--PLGIKVAftPLGI 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 176 ILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTY 253
Cdd:COG0555 140 VLAQTFVslPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLP 219
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
75-272 |
5.04e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 63.84 E-value: 5.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 75 IYGTLVTSFIALLIAVPVSFGIALFLTELaPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAvyfqepvgnimsni 154
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 155 pivgalfsGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLG 234
Cdd:cd06261 66 --------WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137
|
170 180 190
....*....|....*....|....*....|....*...
gi 1559694088 235 LGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALA 272
Cdd:cd06261 138 FARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDL 175
|
|
| pstA |
PRK11268 |
phosphate ABC transporter permease PstA; |
57-247 |
1.93e-08 |
|
phosphate ABC transporter permease PstA;
Pssm-ID: 183065 [Multi-domain] Cd Length: 295 Bit Score: 54.69 E-value: 1.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 57 LWTKEWDAPNDIYGALV-PIYGTLVTSFIALLIAVPVSFGIALFLTELAP-GWLKRPLGIAIELLAAIPSIVYGmwgLFI 134
Cdd:PRK11268 64 LFTEMTPPPNTAGGGLAnAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRkSWLAEVIRFINDILLSAPSIVVG---LFV 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 135 FAPLFAvYFQEpvgnimsnipivgalFSGPAfgiGILAagviLAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEV 214
Cdd:PRK11268 141 YTIVVA-QMEH---------------FSGWA---GVIA----LALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKM 197
|
170 180 190
....*....|....*....|....*....|...
gi 1559694088 215 IWRIVLPFTKNGVIGGIMLGLGRALGETMAVTF 247
Cdd:PRK11268 198 ISAITLKASVSGIMTGVLLAIARIAGETAPLLF 230
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
10-241 |
3.38e-08 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 54.40 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 10 PPGKKGDIIFSVLVKLAALIVLLMLGGIIVSliisswpSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIA 89
Cdd:COG1178 282 KLGRWRWLALALCLLLVLLGLLLPLLALLLW-------SLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLA 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 90 VPVSFGIAlFLTELAPGWLKRPLGIAIELLAAIPSIVYGMwGLFIFAplfavyfqepvgnimsnIPIVGALFSGPAFGIg 169
Cdd:COG1178 355 VLLALLLA-YLVRRRRGRLARLLDRLAMLPYAVPGIVLGL-GLLLLF-----------------NRPLPLLLYGTLAIL- 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1559694088 170 ILAagviLAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGE 241
Cdd:COG1178 415 VLA----YVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE 482
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
79-315 |
7.80e-08 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 52.42 E-value: 7.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 79 LVTSFIALLIAVPVSFGIALFltelaPGWLKRPLGIAIELLAAIPSIVYGMwGLFIFaplfavyfqepvgniMSNIPIVG 158
Cdd:COG1177 71 LLSTLLATVLGTPAALALARY-----RFRGRRLLLALLLLPLVVPGIVLGV-ALLLL---------------FSALGLSG 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 159 ALFsgpafgigilaaGVILA--IMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLG 236
Cdd:COG1177 130 GLW------------GLILAhvVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFT 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 237 RALGETMAVTFIIGNTYQldSASLYMpgnsitsalaneFAEAESGLH--VAAlmeLGLILFVITFIVLAASKFMIMRLAK 314
Cdd:COG1177 198 LSFDEFVITLFLAGPGVT--TLPVYI------------YSMIRRGISpeINA---LSTLLILLSLLLLLLAERLRRRGER 260
|
.
gi 1559694088 315 N 315
Cdd:COG1177 261 R 261
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
78-251 |
2.48e-07 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 50.78 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 78 TLVTSFIALLIAVPVSFGIALFLTELA-PGwlKRPLGIAIELLAAIPSIVYGMwglfifaPLFAVYfqepvgnimSNIPI 156
Cdd:CHL00187 60 TLSMALIAALINGFFGLLIAWVLVRYNfPG--KRLLDAAVDLPFALPTSVAGL-------TLATVY---------GDNGW 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 157 VGALFSGPAFGIGILAAGVILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLG 234
Cdd:CHL00187 122 IGHLLSHLGIQIVFTKLGVLLAMIFVsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
|
170
....*....|....*..
gi 1559694088 235 LGRALGETMAVTFIIGN 251
Cdd:CHL00187 202 FSRAIGEYGSIVIISSN 218
|
|
| COG4590 |
COG4590 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
208-301 |
3.12e-07 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443647 [Multi-domain] Cd Length: 757 Bit Score: 51.77 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 208 GCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDsASLYMPGNSITSALANEFAEAESG------ 281
Cdd:COG4590 646 GATPWQTLTRVVLLTASPGIFSAVMIGLGRAVGETMIVLMATGNTPVMD-FNIFEGMRTLSANIAVEMPESEVGsthyrv 724
|
90 100
....*....|....*....|
gi 1559694088 282 LHVAAlmelgLILFVITFIV 301
Cdd:COG4590 725 LFLAA-----LVLFVFTFVF 739
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
78-253 |
5.52e-07 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 49.70 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 78 TLVTSFIALLIAVPVSFGIALFLTElAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLfavyfqEPVGNIMSNIpIV 157
Cdd:TIGR01581 26 SLATSLASLLLAVIIGIPTAYVLAR-VRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRN------GLLGPYLEAA-GI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 158 GALFSgpafgigilAAGVILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGL 235
Cdd:TIGR01581 98 QVIFS---------TLGVVLAQTFVasPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168
|
170
....*....|....*...
gi 1559694088 236 GRALGETMAVTFIIGNTY 253
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQ 186
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
171-251 |
9.77e-06 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 46.29 E-value: 9.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMAVTFIIG 250
Cdd:PRK10971 141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG 220
|
.
gi 1559694088 251 N 251
Cdd:PRK10971 221 N 221
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
154-252 |
9.18e-05 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 42.67 E-value: 9.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 154 IPIVGALFSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIML 233
Cdd:pfam00528 36 AILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLAL 115
|
90
....*....|....*....
gi 1559694088 234 GLGRALGETMAVTFIIGNT 252
Cdd:pfam00528 116 AFGGALGGAVLLEFLGSWP 134
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
178-318 |
3.72e-04 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 41.06 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 178 AIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGETMA-VTF---IIGNTY 253
Cdd:PRK09421 100 AVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGAtITFvsnIPGETQ 179
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1559694088 254 QLDSAslympgnsITSALANEFAEAESglhvaalMELGLILFVITFIVLAASKFMIMRLAKNEGA 318
Cdd:PRK09421 180 TIPSA--------MYTLIQTPGGESAA-------ARLCIISIAIALASLLLSEWLARRSRKRLGA 229
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
25-311 |
4.33e-04 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 41.69 E-value: 4.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 25 LAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTKEWDApndiygalvpIYGTLVTSFIALLIAVPVSFGIAlFLTELA 104
Cdd:COG1178 16 LALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRA----------LGNTLLLALLVTLLSLLLGVPLA-WLLART 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 105 PGWLKRPLGIAIELLAAIPSIV--YGMWGLFIFAPLFAVYFQEPVGNIMSNIpivgalfsgpafgIGILAAGVILAIMII 182
Cdd:COG1178 85 DFPGRRLLRWLLLLPLALPPYVvaLAWIALFGPNGLLNTLLRALFGLEPPDI-------------YGLGGIILVLVLFNY 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 183 PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGEtMAVTFIIGNTYQldsaslym 262
Cdd:COG1178 152 PYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGTPLVLGGGYT-------- 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1559694088 263 pgnSITSALANEFAeAESGLHVAALmeLGLILFVITFIVLAASKFMIMR 311
Cdd:COG1178 223 ---TLTTAIYQAWL-GDFDLGAAAA--LALVLLLLVLLLLLLERRLRRR 265
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
25-304 |
9.23e-04 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 40.13 E-value: 9.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 25 LAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYG-----TLVTSFIALLIAVPVSFGIALF 99
Cdd:COG1176 14 LLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLkvllrTLWIALLTTLICLLLGYPIAYF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 100 LTeLAPGWLKRPLGIAIELLAAIPSIV--YGMwgLFIFAPlfavyfQEPVGNIMSNIPIVGA----LFSGPAFGIGILAa 173
Cdd:COG1176 94 LA-RAPPRWRNLLLLLVILPFWTSFLVrtYAW--IVLLGR------NGLLNSLLLALGLIDEplrlLYTEFAVVIGLVY- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 174 gVILAIMIIPYIAAvmrdvFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRALGEtMAVTFIIGNTY 253
Cdd:COG1176 164 -VYLPFMVLPLYAA-----LEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA-FVTPALLGGGK 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1559694088 254 QLdsaslympgnSITSALANEFAEAeSGLHVAALMelGLILFVITFIVLAA 304
Cdd:COG1176 237 VL----------MIGNLIYQQFLSA-LNWPLAAAL--AVVLLLIVLLVLLL 274
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
78-239 |
2.19e-03 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 38.98 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 78 TLVTSFIALLIAVPVSFGIALFLTELApgWLKRPLGIAIELLAAIPSIVygmwglfiFAPLFAVYFqepvgnimsnipiv 157
Cdd:COG0600 66 SLLRVLLGFALAALLGVPLGLLLGLSR--LLRRLLDPLLVFLRPIPPLA--------LAPLLILWF-------------- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559694088 158 galfsgpafGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGR 237
Cdd:COG0600 122 ---------GIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGL 192
|
..
gi 1559694088 238 AL 239
Cdd:COG0600 193 AW 194
|
|
| |
