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Conserved domains on  [gi|1560507126|gb|RXB89377|]
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Fe(3+)-hydroxamate ABC transporter permease FhuB [Escherichia coli]

Protein Classification

iron ABC transporter permease( domain architecture ID 11484808)

iron ABC transporter permease is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

Gene Ontology:  GO:0022857|GO:0006826|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  15574383|25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-660 0e+00

Fe(3+)-hydroxamate ABC transporter permease FhuB;


:

Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 703.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126   1 MSKRIALFPALLLALLVIVAAALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQ 80
Cdd:PRK10577    5 MSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  81 QVLRNPLAEPTTLGVATGAQLGITVTTLWAIPG-AMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGA 159
Cdd:PRK10577   85 QVLRNPLASPTTLGVAAGAQLALVLATLFAPALlALASQLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 160 INQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSL 239
Cdd:PRK10577  165 LTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 240 AIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTRVWM-EVSTGSVTALIGAPL 318
Cdd:PRK10577  245 AVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGGeLLPTGAVTALIGAPL 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 319 LLWLLP-RLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAA 397
Cdd:PRK10577  325 LLWLLPrLRSAQSAPAMSAGDRVAARRRRVLAWLLALGLLLLLALVVALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAA 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 398 LFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIIIAAGRGGFSPH 477
Cdd:PRK10577  405 LLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAPE 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 478 RMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARA 557
Cdd:PRK10577  485 RLLLTGIALSALFTALIQLLLASGDPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARA 564

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 558 VGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQI 637
Cdd:PRK10577  565 LGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQI 644

                         650       660
                  ....*....|....*....|...
gi 1560507126 638 PAGLLSTFIGAPYFIYLLRKQSR 660
Cdd:PRK10577  645 PAGLLAALIGAPYFLWLLRRSRR 667
 
Name Accession Description Interval E-value
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-660 0e+00

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 703.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126   1 MSKRIALFPALLLALLVIVAAALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQ 80
Cdd:PRK10577    5 MSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  81 QVLRNPLAEPTTLGVATGAQLGITVTTLWAIPG-AMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGA 159
Cdd:PRK10577   85 QVLRNPLASPTTLGVAAGAQLALVLATLFAPALlALASQLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 160 INQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSL 239
Cdd:PRK10577  165 LTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 240 AIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTRVWM-EVSTGSVTALIGAPL 318
Cdd:PRK10577  245 AVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGGeLLPTGAVTALIGAPL 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 319 LLWLLP-RLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAA 397
Cdd:PRK10577  325 LLWLLPrLRSAQSAPAMSAGDRVAARRRRVLAWLLALGLLLLLALVVALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAA 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 398 LFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIIIAAGRGGFSPH 477
Cdd:PRK10577  405 LLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAPE 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 478 RMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARA 557
Cdd:PRK10577  485 RLLLTGIALSALFTALIQLLLASGDPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARA 564

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 558 VGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQI 637
Cdd:PRK10577  565 LGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQI 644

                         650       660
                  ....*....|....*....|...
gi 1560507126 638 PAGLLSTFIGAPYFIYLLRKQSR 660
Cdd:PRK10577  645 PAGLLAALIGAPYFLWLLRRSRR 667
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 386-658 1.25e-71

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 234.19  E-value: 1.25e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 386 LMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVT-LLI 464
Cdd:COG0609    31 VWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGAVLAIVLGGGLSALGLPLAAFLGALLAaLLV 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 465 IIIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDP-RMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRR 543
Cdd:COG0609   111 YLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPeQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLAR 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 544 WLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVF 623
Cdd:COG0609   191 ALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLL 270

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1560507126 624 ADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQ 658
Cdd:COG0609   271 ADTLARTILAPAELPVGIVTALIGAPFFLYLLRRR 305
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 352-657 6.35e-60

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 203.14  E-value: 6.35e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 352 LAGGVLLLMAVVVALSFGRDAHGWT-WASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSG 430
Cdd:pfam01032   3 LLLILLSLFIGAVKISPSDVFSALLgGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 431 AAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIII-IAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPR-MAQV 508
Cdd:pfam01032  83 AALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYfLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNPEaLQSI 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 509 LTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLS 588
Cdd:pfam01032 163 LFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1560507126 589 FVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRK 657
Cdd:pfam01032 243 FVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 394-655 5.32e-50

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 174.67  E-value: 5.32e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 394 IMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIIIAAGRGG 473
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 474 FSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGD 553
Cdd:cd06550    81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 554 TARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRmVLF 633
Cdd:cd06550   161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR-TLL 239

                         250       260
                  ....*....|....*....|..
gi 1560507126 634 PFQIPAGLLSTFIGAPYFIYLL 655
Cdd:cd06550   240 PSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-660 0e+00

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 703.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126   1 MSKRIALFPALLLALLVIVAAALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQ 80
Cdd:PRK10577    5 MSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  81 QVLRNPLAEPTTLGVATGAQLGITVTTLWAIPG-AMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGA 159
Cdd:PRK10577   85 QVLRNPLASPTTLGVAAGAQLALVLATLFAPALlALASQLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 160 INQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSL 239
Cdd:PRK10577  165 LTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 240 AIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTRVWM-EVSTGSVTALIGAPL 318
Cdd:PRK10577  245 AVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGGeLLPTGAVTALIGAPL 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 319 LLWLLP-RLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAA 397
Cdd:PRK10577  325 LLWLLPrLRSAQSAPAMSAGDRVAARRRRVLAWLLALGLLLLLALVVALSFGRDAHGWNWLSGQLLDALLPLRLPRLLAA 404

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 398 LFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIIIAAGRGGFSPH 477
Cdd:PRK10577  405 LLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAPE 484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 478 RMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARA 557
Cdd:PRK10577  485 RLLLTGIALSALFTALIQLLLASGDPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARA 564

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 558 VGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQI 637
Cdd:PRK10577  565 LGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQI 644

                         650       660
                  ....*....|....*....|...
gi 1560507126 638 PAGLLSTFIGAPYFIYLLRKQSR 660
Cdd:PRK10577  645 PAGLLAALIGAPYFLWLLRRSRR 667
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 386-658 1.25e-71

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 234.19  E-value: 1.25e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 386 LMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVT-LLI 464
Cdd:COG0609    31 VWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGAVLAIVLGGGLSALGLPLAAFLGALLAaLLV 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 465 IIIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDP-RMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRR 543
Cdd:COG0609   111 YLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPeQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLAR 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 544 WLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVF 623
Cdd:COG0609   191 ALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLL 270

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1560507126 624 ADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQ 658
Cdd:COG0609   271 ADTLARTILAPAELPVGIVTALIGAPFFLYLLRRR 305
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 352-657 6.35e-60

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 203.14  E-value: 6.35e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 352 LAGGVLLLMAVVVALSFGRDAHGWT-WASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSG 430
Cdd:pfam01032   3 LLLILLSLFIGAVKISPSDVFSALLgGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 431 AAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIII-IAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPR-MAQV 508
Cdd:pfam01032  83 AALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYfLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNPEaLQSI 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 509 LTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLS 588
Cdd:pfam01032 163 LFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1560507126 589 FVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRK 657
Cdd:pfam01032 243 FVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 394-655 5.32e-50

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 174.67  E-value: 5.32e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 394 IMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIIIAAGRGG 473
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 474 FSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGD 553
Cdd:cd06550    81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 554 TARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWCGRmVLF 633
Cdd:cd06550   161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR-TLL 239

                         250       260
                  ....*....|....*....|..
gi 1560507126 634 PFQIPAGLLSTFIGAPYFIYLL 655
Cdd:cd06550   240 PSELPVGPVTALLGAPYFLYLL 261
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 29-316 1.58e-42

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 155.61  E-value: 1.58e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  29 SQALPRSQWAQAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGIT-VTT 107
Cdd:COG0609     6 AVPISLSDVLRALLGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGAVlAIV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 108 LWAIPGAMASQFAALAGACVVGLIVFGVAW-GKRLSPVTLILAGLVVSLYCGAINQLLVIF-HHDQLQSMFLWSTGTLTQ 185
Cdd:COG0609    86 LGGGLSALGLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLMGSLAG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 186 TDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLA 265
Cdd:COG0609   166 ASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLVVPHIA 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1560507126 266 KMLGARRLLPRLMLASLIGALILWLSDqiilWLTRVWM---EVSTGSVTALIGA 316
Cdd:COG0609   246 RLLVGPDHRRLLPASALLGALLLLLAD----TLARTILapaELPVGIVTALIGA 295
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 40-316 3.81e-37

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 140.74  E-value: 3.81e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  40 AAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLW-AIPGAMASQ 118
Cdd:pfam01032  24 SALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAVLAILLgGSLSLFALP 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 119 FAALAGACVVGLIVFGVA-WGKRLSPVTLILAGLVVSLYCGAINQLLVIFHH-DQLQSMFLWSTGTLTQTDWGGVERLWP 196
Cdd:pfam01032 104 LAAFIGALLAALLVYFLSrGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpEALQSILFWLMGSLSGANWSDVLILLP 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 197 QLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR 276
Cdd:pfam01032 184 LLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRRL 263

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1560507126 277 LMLASLIGALILWLSDQIILWLTRVWmEVSTGSVTALIGA 316
Cdd:pfam01032 264 LPLSALLGALLLLLADILARTILSPY-ELPVGIVTALIGA 302
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
386-655 1.01e-33

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 131.32  E-value: 1.01e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 386 LMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLII 465
Cdd:PRK09777   47 LMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILL 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 466 IIAAGRGgfSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWL 545
Cdd:PRK09777  127 KMLAGTH--QPMKLALTGVALSALWASLTDYLMLSRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDL 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 546 TILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFAD 625
Cdd:PRK09777  205 DLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLAD 284

                         250       260       270
                  ....*....|....*....|....*....|
gi 1560507126 626 WCGRMVLFPFQIPAGLLSTFIGAPYFIYLL 655
Cdd:PRK09777  285 LLARIIHPPLELPAGVLTAIIGAPWFFWLL 314
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-316 9.51e-33

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 126.90  E-value: 9.51e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  62 LAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQ-FAALAGACVVGLIVFGVAWGKR 140
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALgAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 141 LSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDG 220
Cdd:cd06550    81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 221 VARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTr 300
Cdd:cd06550   161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL- 239

                         250
                  ....*....|....*.
gi 1560507126 301 vWMEVSTGSVTALIGA 316
Cdd:cd06550   240 -PSELPVGPVTALLGA 254
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 356-660 2.51e-32

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 127.76  E-value: 2.51e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 356 VLLLMAVVVALSFGrDAHGWTWASGALLEDLMPW--RWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAF 433
Cdd:PRK03784   23 VLLLLALLLSLCAG-EQWISPGDWLSPRGELFVWqlRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGV 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 434 GVVLMLFLVPGNAFGWLLPAGS-LGAAVTLLIIIIAAGRGGFSPHRMLLAGMAL---STAFTMLLMMLQASGDPRmaQVL 509
Cdd:PRK03784  102 ALVAAVLLGQGLLPPWALSLCAiAGALLITLILLRFARRHRLSTSRLLLAGVALgiiCSALMTWAVYFSTSLDLR--QLM 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 510 TWISGSTYNATdaqvWRTGIVMVILL-AITPLCRRW--LTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGP 586
Cdd:PRK03784  180 YWMMGGFGGVD----WRQSWLMLALLpVLIWLCCQGrpLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGA 255

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1560507126 587 LSFVGLMAPHIARMMGF---RRTMPhivISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660
Cdd:PRK03784  256 IGFIGLVIPHILRLCGLtdhRVLLP---GCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHR 329
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
390-657 5.74e-31

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 123.65  E-value: 5.74e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 390 RWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLP-AGSLGAAVTLLIIIIA 468
Cdd:PRK11228   51 RLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTPFAGYSLAfIAACGGGLSWLLVMTA 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 469 AG--RGGFSPHRMLLAGMALS------TAFTMLLMMLQASGdprmaqVLTWISGSTYNATDAQVWRTGIVMVILLAITPL 540
Cdd:PRK11228  131 GGgwRHTHDRNRLILAGIALSalcmalTRITLLLAEDHAYG------IFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLL 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 541 CRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMM---GFRRTMPhivISALVG 617
Cdd:PRK11228  205 LANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWigyDQRNVLP---MSMLLG 281

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1560507126 618 GLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRK 657
Cdd:PRK11228  282 ATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARR 321
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
348-660 7.31e-30

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 120.59  E-value: 7.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 348 LAFALAGGVLLLMAVVVALSFGRDAHGWTW-ASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLG 426
Cdd:PRK10440   16 LAACVAAGLWGLRSGAVTLETSQVFAALMGdAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMG 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 427 ISSGAAFGVVLMLFLVPGNAFGWLLPAGSlGAAVTLLIIIIAAGRGGFSPHRMLLAGMALS---TAFTMLLMmLQASGDP 503
Cdd:PRK10440   96 FNTGAWSGVLVAMVLFGQDLTAIALAAMA-GGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRamlVAFNTWLL-LKASLET 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 504 RMAQVLtWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMT 583
Cdd:PRK10440  174 ALTAGL-WNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATAL 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1560507126 584 IGPLSFVGLMAPHIA-RMMGFRRTMPhiVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660
Cdd:PRK10440  253 AGPISFIALVAPHIArRLSGTARWGL--TQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESR 328
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 340-660 3.36e-29

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 118.42  E-value: 3.36e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 340 VAAERQHVLAFALAGGVLLLMAVVVALSFGrDAHGWTWASGALLEDLMPW--RWPRIMAALFAGVMLAVAGCIIQRLTGN 417
Cdd:COG4139     4 PQRQRRRDRRWLLLLLLLLLLLFVLSLCAG-EVWIPPTQWLSEAWQLFVWqlRLPRTLAAVLVGASLAVSGAVMQALFEN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 418 PMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGS-LGAAVTLLIIIIAAGRGgFSPHRMLLAGMAL---STAFTML 493
Cdd:COG4139    83 PLAEPGLLGISNGAGVGLVLVVLLGGGLLPPWLLSLAAiAGALLVTLLLLAFARRR-LSNARLLLIGVALgiiCSAIMTW 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 494 LMMLQASGDPRmaQVLTWISGSTYNATdaqvWRTGIVMVILL-AITPLCR--RWLTILPLGGDTARAVGMALTPTRIALL 570
Cdd:COG4139   162 AVYFSSSLDLR--QLMYWMMGSFGGVD----WRQLWLLLALLpVLLWLCLqgKPLNLLLLGENQARQLGLSVHRWRNLLV 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 571 LLAACLTATATMTIGPLSFVGLMAPHIARMMGF---RRTMPhivISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIG 647
Cdd:COG4139   236 LATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTtdhRFLLP---ACALAGAALLLLADIIARLALSSAELPIGVVTATLG 312

                         330
                  ....*....|...
gi 1560507126 648 APYFIYLLRKQSR 660
Cdd:COG4139   313 APVFIWLLLRRRK 325
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 59-316 1.21e-27

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 114.45  E-value: 1.21e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  59 LPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWG 138
Cdd:COG4779    74 LPRALAALLVGAALGLSGAIFQSLTRNPLASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWR 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 139 KRLSPVTLILAGLVVSLYCGAINQ-LLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGL 217
Cdd:COG4779   154 GGVSGYRLILVGIGVSAMLTAVNSyLLTRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLEL 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 218 DDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLgARRLLPRLMLASLIGALILWLSDQIILW 297
Cdd:COG4779   234 GDDTAAALGVRVERTRLLLLLVAVALAAVATAAAGPIAFVALAAPQIARRL-TRSPGPPLLPSALVGALLLLAADLVAQH 312

                         250
                  ....*....|....*....
gi 1560507126 298 LTRVWmEVSTGSVTALIGA 316
Cdd:COG4779   313 LLAPV-QLPVGVVTGALGG 330
btuC PRK09535
cobalamin ABC transporter permease BtuC;
390-657 2.78e-25

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 107.91  E-value: 2.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 390 RWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGwLLPAGSLGAAVTLLIIIIAA 469
Cdd:PRK09535   95 RLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVPFG-LQAAAFAGALVAAFGVYAIA 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 470 GRGGFSP-HRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTIL 548
Cdd:PRK09535  174 TENGRTPvATLLLAGVAVQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVL 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 549 PLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMM---GFRRTMPhivISALVGGLLLVFAD 625
Cdd:PRK09535  254 LLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLvgpDHRILLP---TSALAGASFLVATD 330

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1560507126 626 WCGRmvLFPFQIPAGLLSTFIGAPYFIYLLRK 657
Cdd:PRK09535  331 TVAR--SGPAEVPVGIVTAALGAPFFLYLLRT 360
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
390-660 5.70e-24

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 103.63  E-value: 5.70e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 390 RWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIIIAA 469
Cdd:PRK10441   60 RLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTG 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 470 GRGG--FSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTI 547
Cdd:PRK10441  140 SQGGgqLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNS 219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 548 LPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADWC 627
Cdd:PRK10441  220 LSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADII 299

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1560507126 628 GRMvLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660
Cdd:PRK10441  300 GRL-LVPGELRVSVVSAFIGAPVLIFLVRRKTR 331
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
59-316 9.35e-23

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 99.77  E-value: 9.35e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  59 LPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWA---IPGAMASQFAALAGAcVVGLIVF-- 133
Cdd:PRK11228   52 LPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSptpFAGYSLAFIAACGGG-LSWLLVMta 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 134 GVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLT 213
Cdd:PRK11228  131 GGGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLN 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 214 LMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQ 293
Cdd:PRK11228  211 LLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADL 290

                         250       260
                  ....*....|....*....|...
gi 1560507126 294 IILWLTrVWMEVSTGSVTALIGA 316
Cdd:PRK11228  291 LARALA-FPGELPAGAVLALIGA 312
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 29-316 1.45e-19

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 90.30  E-value: 1.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  29 SQALPRSQWAQAAWspdidvieQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGItVTTL 108
Cdd:COG4139    34 EVWIPPTQWLSEAW--------QLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGL-VLVV 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 109 WAIPGAMAS---QFAALAGACVVGLIVFGVAwGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHD-QLQSMFLWSTGTLT 184
Cdd:COG4139   105 LLGGGLLPPwllSLAAIAGALLVTLLLLAFA-RRRLSNARLLLIGVALGIICSAIMTWAVYFSSSlDLRQLMYWMMGSFG 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 185 QTDWGGVErLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLL 264
Cdd:COG4139   184 GVDWRQLW-LLLALLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHL 262

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1560507126 265 AKMLGA---RRLLPRLMLAsliGALILWLSDqIILWLTRVWMEVSTGSVTALIGA 316
Cdd:COG4139   263 LRLLGTtdhRFLLPACALA---GAALLLLAD-IIARLALSSAELPIGVVTATLGA 313
btuC PRK09535
cobalamin ABC transporter permease BtuC;
28-316 1.18e-16

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 82.11  E-value: 1.18e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  28 FSQALPRSQWAqAAWSPDIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTT 107
Cdd:PRK09535   66 LSLPAPDLEYA-SPFSFAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAI 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 108 LWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPV-TLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQT 186
Cdd:PRK09535  145 VLPLAVPFGLQAAAFAGALVAAFGVYAIATENGRTPVaTLLLAGVAVQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGS 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 187 DWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAK 266
Cdd:PRK09535  225 TWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMR 304

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1560507126 267 ML---GARRLLPrlmLASLIGALILWLSDQIILWLTrvwMEVSTGSVTALIGA 316
Cdd:PRK09535  305 LLvgpDHRILLP---TSALAGASFLVATDTVARSGP---AEVPVGIVTAALGA 351
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
59-316 9.98e-16

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 78.55  E-value: 9.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  59 LPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLgITVTTLWAIPGAMASQFAALA-GACVVGLIVFGVAW 137
Cdd:PRK09777   52 LPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASL-ASVGALLLFPSLPVMWLPLLAfIGGMAGLILLKMLA 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 138 GKRlSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGL 217
Cdd:PRK09777  131 GTH-QPMKLALTGVALSALWASLTDYLMLSRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLAL 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 218 DDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDqiilW 297
Cdd:PRK09777  210 GDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLAD----L 285

                         250       260
                  ....*....|....*....|..
gi 1560507126 298 LTRVW---MEVSTGSVTALIGA 316
Cdd:PRK09777  286 LARIIhppLELPAGVLTAIIGA 307
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
59-316 1.12e-15

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 78.60  E-value: 1.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  59 LPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITV-TTLWAIPGAMASQFAALAGACVVGLIVF--GV 135
Cdd:PRK10441   61 LPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLgAALFGYSSAQEQLAMAFAGALVASLIVAftGS 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 136 AWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLM 215
Cdd:PRK10441  141 QGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSL 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 216 GLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQII 295
Cdd:PRK10441  221 SLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIG 300

                         250       260
                  ....*....|....*....|.
gi 1560507126 296 LWLTRVWMEVSTgsVTALIGA 316
Cdd:PRK10441  301 RLLVPGELRVSV--VSAFIGA 319
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
59-294 4.60e-15

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 76.67  E-value: 4.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  59 LPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWG 138
Cdd:PRK10440   60 LPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWR 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 139 KRLSPVTLILAGLVVSLYCGAINQLLVIfhHDQLQSMF---LWSTGTLTQTDWGgveRLWPQLLGGVMLTLLLLRPLTLM 215
Cdd:PRK10440  140 NGIDTFRLIIIGIGVRAMLVAFNTWLLL--KASLETALtagLWNAGSLNGLTWA---KTSPSAPIIILMLIAAALLVRRM 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 216 GL---DDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKML-GARRLlpRLMLASLIGALILWLS 291
Cdd:PRK10440  215 RLlemGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLsGTARW--GLTQAALCGALLLLAA 292


                  ...
gi 1560507126 292 DQI 294
Cdd:PRK10440  293 DLC 295
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 59-316 3.57e-14

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 74.22  E-value: 3.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126  59 LPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG--ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVA 136
Cdd:PRK03784   59 LPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVAlvAAVLLGQGLLPPWALSLCAIAGALLITLILLRFA 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 137 WGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQ-LQSMFLWSTGTLTQTDWgGVERLWPQLLGGVMLTLLLLRPLTLM 215
Cdd:PRK03784  139 RRHRLSTSRLLLAGVALGIICSALMTWAVYFSTSLdLRQLMYWMMGGFGGVDW-RQSWLMLALLPVLIWLCCQGRPLNML 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1560507126 216 GLDDGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGA---RRLLPRLMLAsliGALILWLSD 292
Cdd:PRK03784  218 ALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLtdhRVLLPGCALA---GASLLLLAD 294

                         250       260
                  ....*....|....*....|....
gi 1560507126 293 qIILWLTRVWMEVSTGSVTALIGA 316
Cdd:PRK03784  295 -IVARLALASAELPIGVVTATLGA 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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