transposase [Escherichia coli]
Protein Classification
nuclease/transposase family protein( domain architecture ID 1563233)
PD-(D/E)XK nuclease/transposase family protein similar to the recombination-promoting nuclease RpnA, which is a low activity DNA endonuclease active on single- and double-stranded DNA, but not RNA, with little sequence specificity
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| RpnC super family | cl35003 | Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]; |
2-69 | 5.97e-10 | ||
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]; The actual alignment was detected with superfamily member COG5464: Pssm-ID: 444215 [Multi-domain] Cd Length: 301 Bit Score: 52.66 E-value: 5.97e-10
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| Name | Accession | Description | Interval | E-value | ||
| RpnC | COG5464 | Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]; |
2-69 | 5.97e-10 | ||
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]; Pssm-ID: 444215 [Multi-domain] Cd Length: 301 Bit Score: 52.66 E-value: 5.97e-10
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| T_den_put_tspse | TIGR01784 | conserved hypothetical protein (putative transposase or invertase); Several lines of evidence ... |
2-67 | 1.29e-09 | ||
conserved hypothetical protein (putative transposase or invertase); Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754. Pssm-ID: 273806 [Multi-domain] Cd Length: 270 Bit Score: 51.63 E-value: 1.29e-09
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| Name | Accession | Description | Interval | E-value | ||
| RpnC | COG5464 | Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]; |
2-69 | 5.97e-10 | ||
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair]; Pssm-ID: 444215 [Multi-domain] Cd Length: 301 Bit Score: 52.66 E-value: 5.97e-10
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| T_den_put_tspse | TIGR01784 | conserved hypothetical protein (putative transposase or invertase); Several lines of evidence ... |
2-67 | 1.29e-09 | ||
conserved hypothetical protein (putative transposase or invertase); Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754. Pssm-ID: 273806 [Multi-domain] Cd Length: 270 Bit Score: 51.63 E-value: 1.29e-09
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| Blast search parameters | ||||
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