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Conserved domains on  [gi|1570043776|gb|RYP42353|]
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hypothetical protein DL767_000275 [Monosporascus sp. MG133]

Protein Classification

M28 family metallopeptidase( domain architecture ID 10133732)

M28 family metallopeptidase is a zinc-dependent peptidase that may be an aminopeptidase or a carboxypeptidase with co-catalytic zinc ions; similar to Homo sapiens endoplasmic reticulum metallopeptidase 1 that is required for the organization of somatic cells and oocytes into discrete follicular structures

CATH:  3.40.630.10
EC:  3.-.-.-
Gene Ontology:  GO:0008237|GO:0006508|GO:0008270
MEROPS:  M28

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
M28_Fxna_like cd03875
M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic ...
48-380 4.39e-123

M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this subfamily is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown.


:

Pssm-ID: 349872 [Multi-domain]  Cd Length: 307  Bit Score: 376.54  E-value: 4.39e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776  48 GINLTQSWLDLTVL-TRHYHPFNSRENDEIHDWLLRRLEDIKEKNAANDSNIVVLEDMISNVTVtdaaSPSDVGSGTYFE 126
Cdd:cd03875     3 GFSLERAWEDLQVLiSIGPHPYGSHNNDKVRDYLLARVEEIKERANANGLEVEVQDDTGSGSFN----FLSSGMTLVYFE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 127 GTNIIVYIRGKDDPqgpwwkdgrmyadkviGKGGVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSRREHRPQRGIVA 206
Cdd:cd03875    79 VTNIVVRISGKNSN----------------SLPALLLNAHFDSVPTSPGATDDGMGVAVMLEVLRYLSKSGHQPKRDIIF 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 207 LFNNNEEDWLWGARAFG-KSPFMHFCHTFLNLEGAGAGGRATLFRATDAEVVKAY-KGSEHPFGTVVSSDAWATGAIRSG 284
Cdd:cd03875   143 LFNGAEENGLLGAHAFItQHPWAKNVRAFINLEAAGAGGRAILFQTGPPWLVEAYySAAKHPFASVIAQDVFQSGLIPSD 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 285 TDYSVFHDIYGLRGLDVAFYRPRARYHTNQDDAKHTSKASLWHMLSSSLHTMEHLSGNTGQTFIGdrpdgdrkkvyNGRP 364
Cdd:cd03875   223 TDYRVFRDYGGLPGLDIAFYKNRYVYHTKYDTADHISRGSLQHMGDNLLALLRYLANSSELENDS-----------EYRG 291
                         330
                  ....*....|....*.
gi 1570043776 365 TAGVWFDMFGRAFAVF 380
Cdd:cd03875   292 GPAVFFDLLGLFFVYY 307
 
Name Accession Description Interval E-value
M28_Fxna_like cd03875
M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic ...
48-380 4.39e-123

M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this subfamily is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown.


Pssm-ID: 349872 [Multi-domain]  Cd Length: 307  Bit Score: 376.54  E-value: 4.39e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776  48 GINLTQSWLDLTVL-TRHYHPFNSRENDEIHDWLLRRLEDIKEKNAANDSNIVVLEDMISNVTVtdaaSPSDVGSGTYFE 126
Cdd:cd03875     3 GFSLERAWEDLQVLiSIGPHPYGSHNNDKVRDYLLARVEEIKERANANGLEVEVQDDTGSGSFN----FLSSGMTLVYFE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 127 GTNIIVYIRGKDDPqgpwwkdgrmyadkviGKGGVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSRREHRPQRGIVA 206
Cdd:cd03875    79 VTNIVVRISGKNSN----------------SLPALLLNAHFDSVPTSPGATDDGMGVAVMLEVLRYLSKSGHQPKRDIIF 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 207 LFNNNEEDWLWGARAFG-KSPFMHFCHTFLNLEGAGAGGRATLFRATDAEVVKAY-KGSEHPFGTVVSSDAWATGAIRSG 284
Cdd:cd03875   143 LFNGAEENGLLGAHAFItQHPWAKNVRAFINLEAAGAGGRAILFQTGPPWLVEAYySAAKHPFASVIAQDVFQSGLIPSD 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 285 TDYSVFHDIYGLRGLDVAFYRPRARYHTNQDDAKHTSKASLWHMLSSSLHTMEHLSGNTGQTFIGdrpdgdrkkvyNGRP 364
Cdd:cd03875   223 TDYRVFRDYGGLPGLDIAFYKNRYVYHTKYDTADHISRGSLQHMGDNLLALLRYLANSSELENDS-----------EYRG 291
                         330
                  ....*....|....*.
gi 1570043776 365 TAGVWFDMFGRAFAVF 380
Cdd:cd03875   292 GPAVFFDLLGLFFVYY 307
Peptidase_M28 pfam04389
Peptidase family M28;
129-336 1.14e-45

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 162.45  E-value: 1.14e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 129 NIIVYIRGKDDPQGpwwkdgrmyadkvigkggVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFsRREHRPQRGIVALF 208
Cdd:pfam04389   1 NVIAKLPGKAPDEV------------------VLLSAHYDSVGTGPGADDNASGVAALLELARVL-AAGQRPKRSVRFLF 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 209 NNNEEDWLWGARAFGKS-PFMHFCHTFLNLEGAGAGGRATLFRATD--AEVVKAY-KGSEHPFGTVVSSDAWATGAIRSG 284
Cdd:pfam04389  62 FDAEEAGLLGSHHFAKShPPLKKIRAVINLDMIGSGGPALLFQSGPkgSSLLEKYlKAAAKPYGVTLAEDPFQERGGPGR 141
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1570043776 285 TDYSVFHDiYGLRGLDVAFYRPRARYHTNQDDAKHTSKASLWHMLSSSLHTM 336
Cdd:pfam04389 142 SDHAPFIK-AGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV 192
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
117-340 7.18e-20

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 90.19  E-value: 7.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 117 SDVGSGTYFEGTNIIVYIRGKDDPqgpwwkdgrmyaDKVIgkggVLMnAHYDSVSTGY-GATDDGMGVVTLMALVDYFSR 195
Cdd:COG2234    36 GLLLEAAGGDSRNVIAEIPGTDPP------------DEVV----VLG-AHYDSVGSIGpGADDNASGVAALLELARALAA 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 196 REHRPQRGIVALFNNNEEDWLWGARAFGKSPFMHF--CHTFLNLEGAGAGGRATLF-------RATDAEVVKAYkGSEHP 266
Cdd:COG2234    99 LGPKPKRTIRFVAFGAEEQGLLGSRYYAENLKAPLekIVAVLNLDMIGRGGPRNYLyvdgdggSPELADLLEAA-AKAYL 177
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1570043776 267 FGTVVSSDAWATGAIRSgtDYSVFHDiYGLRGLDVAFYRPR--ARYHTNQDDAKHTSKASLWHMLSSSLHTMEHLS 340
Cdd:COG2234   178 PGLGVDPPEETGGYGRS--DHAPFAK-AGIPALFLFTGAEDyhPDYHTPSDTLDKIDLDALAKVAQLLAALVYELA 250
 
Name Accession Description Interval E-value
M28_Fxna_like cd03875
M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic ...
48-380 4.39e-123

M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this subfamily is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown.


Pssm-ID: 349872 [Multi-domain]  Cd Length: 307  Bit Score: 376.54  E-value: 4.39e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776  48 GINLTQSWLDLTVL-TRHYHPFNSRENDEIHDWLLRRLEDIKEKNAANDSNIVVLEDMISNVTVtdaaSPSDVGSGTYFE 126
Cdd:cd03875     3 GFSLERAWEDLQVLiSIGPHPYGSHNNDKVRDYLLARVEEIKERANANGLEVEVQDDTGSGSFN----FLSSGMTLVYFE 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 127 GTNIIVYIRGKDDPqgpwwkdgrmyadkviGKGGVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSRREHRPQRGIVA 206
Cdd:cd03875    79 VTNIVVRISGKNSN----------------SLPALLLNAHFDSVPTSPGATDDGMGVAVMLEVLRYLSKSGHQPKRDIIF 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 207 LFNNNEEDWLWGARAFG-KSPFMHFCHTFLNLEGAGAGGRATLFRATDAEVVKAY-KGSEHPFGTVVSSDAWATGAIRSG 284
Cdd:cd03875   143 LFNGAEENGLLGAHAFItQHPWAKNVRAFINLEAAGAGGRAILFQTGPPWLVEAYySAAKHPFASVIAQDVFQSGLIPSD 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 285 TDYSVFHDIYGLRGLDVAFYRPRARYHTNQDDAKHTSKASLWHMLSSSLHTMEHLSGNTGQTFIGdrpdgdrkkvyNGRP 364
Cdd:cd03875   223 TDYRVFRDYGGLPGLDIAFYKNRYVYHTKYDTADHISRGSLQHMGDNLLALLRYLANSSELENDS-----------EYRG 291
                         330
                  ....*....|....*.
gi 1570043776 365 TAGVWFDMFGRAFAVF 380
Cdd:cd03875   292 GPAVFFDLLGLFFVYY 307
Peptidase_M28 pfam04389
Peptidase family M28;
129-336 1.14e-45

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 162.45  E-value: 1.14e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 129 NIIVYIRGKDDPQGpwwkdgrmyadkvigkggVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFsRREHRPQRGIVALF 208
Cdd:pfam04389   1 NVIAKLPGKAPDEV------------------VLLSAHYDSVGTGPGADDNASGVAALLELARVL-AAGQRPKRSVRFLF 61
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 209 NNNEEDWLWGARAFGKS-PFMHFCHTFLNLEGAGAGGRATLFRATD--AEVVKAY-KGSEHPFGTVVSSDAWATGAIRSG 284
Cdd:pfam04389  62 FDAEEAGLLGSHHFAKShPPLKKIRAVINLDMIGSGGPALLFQSGPkgSSLLEKYlKAAAKPYGVTLAEDPFQERGGPGR 141
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1570043776 285 TDYSVFHDiYGLRGLDVAFYRPRARYHTNQDDAKHTSKASLWHMLSSSLHTM 336
Cdd:pfam04389 142 SDHAPFIK-AGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV 192
M28 cd02690
M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also ...
127-325 3.21e-20

M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also called aminopeptidase Y family) contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Plasma glutamate carboxypeptidase (PGCP) and glutamate carboxypeptidase II (NAALADase) hydrolyze dipeptides. Several members of the M28 peptidase family have PA domain inserts which may participate in substrate binding and/or in promoting conformational changes, which influence the stability and accessibility of the site to substrate. These include prostate-specific membrane antigen (PSMA), yeast aminopeptidase S (SGAP), human transferrin receptors (TfR1 and TfR2), plasma glutamate carboxypeptidase (PGCP) and several predicted aminopeptidases where relatively little is known about them. Also included in the M28 family are glutaminyl cyclases (QC), which are involved in N-terminal glutamine cyclization of many endocrine peptides. Nicastrin and nicalin belong to this family but lack the amino-acid conservation required for catalytically active aminopeptidases.


Pssm-ID: 349868 [Multi-domain]  Cd Length: 202  Bit Score: 89.71  E-value: 3.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 127 GTNIIVYIRGKDDPqgpwwkdgrmyaDKVIgkggvLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSRREHRPQRGIVA 206
Cdd:cd02690     1 GYNVIATIKGSDKP------------DEVI-----LIGAHYDSVPLSPGANDNASGVAVLLELARVLSKLQLKPKRSIRF 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 207 LFNNNEEDWLWGARAFGKSPFMHFCHTF--LNLEGAGAGGRATLFR---ATDAEVVKAYKGSEHPFGTVVSSDAWATGAI 281
Cdd:cd02690    64 AFWDAEELGLLGSKYYAEQLLSSLKNIRaaLNLDMIGGAGPDLYLQtapGNDALVEKLLRALAHELENVVYTVVYKEDGG 143
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1570043776 282 RSGTDYSVFHDIyGLRGLDV---AFYRPRaRYHTNQDDAKHTSKASL 325
Cdd:cd02690   144 TGGSDHRPFLAR-GIPAASLiqsESYNFP-YYHTTQDTLENIDKDTL 188
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
117-340 7.18e-20

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 90.19  E-value: 7.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 117 SDVGSGTYFEGTNIIVYIRGKDDPqgpwwkdgrmyaDKVIgkggVLMnAHYDSVSTGY-GATDDGMGVVTLMALVDYFSR 195
Cdd:COG2234    36 GLLLEAAGGDSRNVIAEIPGTDPP------------DEVV----VLG-AHYDSVGSIGpGADDNASGVAALLELARALAA 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 196 REHRPQRGIVALFNNNEEDWLWGARAFGKSPFMHF--CHTFLNLEGAGAGGRATLF-------RATDAEVVKAYkGSEHP 266
Cdd:COG2234    99 LGPKPKRTIRFVAFGAEEQGLLGSRYYAENLKAPLekIVAVLNLDMIGRGGPRNYLyvdgdggSPELADLLEAA-AKAYL 177
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1570043776 267 FGTVVSSDAWATGAIRSgtDYSVFHDiYGLRGLDVAFYRPR--ARYHTNQDDAKHTSKASLWHMLSSSLHTMEHLS 340
Cdd:COG2234   178 PGLGVDPPEETGGYGRS--DHAPFAK-AGIPALFLFTGAEDyhPDYHTPSDTLDKIDLDALAKVAQLLAALVYELA 250
M28_like_PA cd05660
M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 ...
161-247 2.63e-07

M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.


Pssm-ID: 349910 [Multi-domain]  Cd Length: 290  Bit Score: 53.52  E-value: 2.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 161 VLMNAHYDSVSTGY---------GATDDGMGVVTLMALVDYFSRREHRPQRGIVALFNNNEEDWLWGARAFGKSPFMHFC 231
Cdd:cd05660    76 IVLSAHWDHLGIGPpiggdeiynGAVDNASGVAAVLELARVFAAQDQRPKRSIVFLAVTAEEKGLLGSRYYAANPIFPLD 155
                          90
                  ....*....|....*...
gi 1570043776 232 HT--FLNLEGAGAGGRAT 247
Cdd:cd05660   156 KIvaNLNIDMIGRIGPTK 173
M28_like cd03877
M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family ...
127-226 7.70e-07

M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349874 [Multi-domain]  Cd Length: 206  Bit Score: 50.70  E-value: 7.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 127 GTNIIVYIRGKDDPqgpwwkdgrmyaDKVIgkggVLMnAHYDSVSTG--------Y-GATDDGMGVVTLMALVDYFsRRE 197
Cdd:cd03877     1 GHNVVGVLEGSDLP------------DETI----VIG-AHYDHLGIGggdsgdkiYnGADDNASGVAAVLELARYF-AKQ 62
                          90       100
                  ....*....|....*....|....*....
gi 1570043776 198 HRPQRGIVALFNNNEEDWLWGARAFGKSP 226
Cdd:cd03877    63 KTPKRSIVFAAFTAEEKGLLGSKYFAENP 91
M28_like cd08015
M28 Zn-peptidase-like; uncharacterized subfamily; Peptidase family M28 (also called ...
161-315 4.75e-06

M28 Zn-peptidase-like; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349937 [Multi-domain]  Cd Length: 218  Bit Score: 48.75  E-value: 4.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 161 VLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSRREHRPQRGI-VALFnNNEEDWLWGARA-----FGKSPFMHFC--- 231
Cdd:cd08015    18 VILGAHLDSWHGATGATDNGAGTAVMMEAMRILKAIGSKPKRTIrVALW-GSEEQGLHGSRAyvekhFGDPPTMQLQrdh 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 232 ---HTFLNLEGaGAGGRATLFRATDAEVVKAYKGSEHPFGTVVSSDAWATGAirSGTDYSVFhDIYGLRGL----DVAFY 304
Cdd:cd08015    97 kkiSAYFNLDN-GTGRIRGIYLQGNLAAYPIFSAWLYPFHDLGATTVIERNT--GGTDHAAF-DAVGIPAFqfiqDPWDY 172
                         170
                  ....*....|.
gi 1570043776 305 RPRArYHTNQD 315
Cdd:cd08015   173 WTRT-HHTNRD 182
M28_Pgcp_like cd03883
M28 Zn-Peptidase Plasma glutamate carboxypeptidase; Peptidase M28 family; Plasma glutamate ...
148-224 7.66e-06

M28 Zn-Peptidase Plasma glutamate carboxypeptidase; Peptidase M28 family; Plasma glutamate carboxypeptidase (PGCP; blood plasma glutamate carboxypeptidase; EC 3.4.17.21) subfamily. PGCP is a 56kDa glutamate carboxypeptidase that is mainly produced in mammalian placenta and kidney, the majority of which is thought to be secreted into the bloodstream. Similar proteins are also found in other species, including bacteria. These proteins contain protease-associated (PA) domain inserts between the first and second strands of the central beta sheet in the protease-like domain. The PA domains may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. The exact physiological substrates of PGCP are unknown, although this enzyme may play an important role in the hydrolysis of circulating peptides. Its closest homolog encodes an important brain glutamate carboxypeptidase II (NAALADase) identical to the prostate-specific membrane antigen (PSMA), which serves as a marker for prostatic cancer metastasis. Hypermethylation of PGCP gene has been associated with human bronchial epithelial (HBE) cell immortalization and lung cancer. PGCP also provides an attractive target for serological analysis in hepatitis C virus (HCV)-induced hepatocellular carcinoma (HCC) patients.


Pssm-ID: 349879 [Multi-domain]  Cd Length: 425  Bit Score: 49.62  E-value: 7.66e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1570043776 148 GRMYADKVigkggVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSRREHRPQRGIVALFNNNEEDWLWGARAFGK 224
Cdd:cd03883   235 GSKYPDEV-----VLVGGHLDSWDVGTGAMDDGGGVAISWEALKLIKDLGLKPKRTIRVVLWTGEEQGLVGAKAYAE 306
M28_like cd05640
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
127-213 3.05e-05

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349893 [Multi-domain]  Cd Length: 281  Bit Score: 47.06  E-value: 3.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 127 GTNIIVYIRGKDDPQGPwwkdgrmyadkvigkggVLMNAHYDSVSTGYGATDDGMGVVTLMALVDYFSrrEHRPQRGIVA 206
Cdd:cd05640    52 YANLIADLPGSYSQDKL-----------------ILIGAHYDTVPGSPGADDNASGVAALLELARLLA--TLDPNHTLRF 112

                  ....*..
gi 1570043776 207 LFNNNEE 213
Cdd:cd05640   113 VAFDLEE 119
M28_PSMA_like cd08022
M28 Zn-peptidase prostate-specific membrane antigen; Peptidase M28 family; prostate-specific ...
129-316 1.29e-04

M28 Zn-peptidase prostate-specific membrane antigen; Peptidase M28 family; prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase II or GCP-II)-like subfamily. PSMA is a homodimeric type II transmembrane protein containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of the normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. Inhibition of GCP-II has been shown to be effective in preclinical models of neurological disorders associated with excessive activation of glutamatergic systems. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants.


Pssm-ID: 349942 [Multi-domain]  Cd Length: 287  Bit Score: 44.91  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 129 NIIVYIRGKDDPqgpwwkdgrmyaDKVIgkggVLMNaHYDSvsTGYGATDDGMGVVTLMALVDYF---SRREHRPQRGIV 205
Cdd:cd08022    62 NVIGTIRGSEEP------------DEYI----ILGN-HRDA--WVFGAGDPNSGTAVLLEVARALgtlLKKGWRPRRTII 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 206 alFNN--NEEDWLWGARAFG--------KSPFMhfchtFLNLEGAGAGG----------RATLFRATDaEVVKAYKGSEH 265
Cdd:cd08022   123 --FASwdAEEYGLIGSTEWVeenadwlqERAVA-----YLNVDVAVSGStlraagspllQNLLREAAK-EVQDPDEGATL 194
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1570043776 266 PFGTVVSSDAWAT-GAIRSGTDYSVFHDIYGLRGLDVAFYRPRAR----YHTNQDD 316
Cdd:cd08022   195 KYLPSWWDDTGGEiGNLGSGSDYTPFLDHLGIASIDFGFSGGPTDpyphYHSNYDS 250
M28_like_PA_PDZ_associated cd05663
M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ ...
121-316 2.12e-04

M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ domain; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349913 [Multi-domain]  Cd Length: 266  Bit Score: 44.37  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 121 SGTYF--------EGTNIIVYIRGKDDPQGPWWKDGRMYaDKViGKGGVLMNAHYDSVSTGYGATDDGMGVVTLMALVDY 192
Cdd:cd05663    41 NGTYFqpfefttgTGRNVIGVLPGKGDVADETVVVGAHY-DHL-GYGGEGSLARGDESLIHNGADDNASGVAAMLELAAK 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570043776 193 F--SRREHRPQRGIVALFNNNEEDWLWGARAFGKSPFMHFCHT--FLNLEGAGaggratlfRATDAEVVKAYKGSEHPFG 268
Cdd:cd05663   119 LvdSDTSLALSRNLVFIAFSGEELGLLGSKHFVKNPPFPIKNTvyMINMDMVG--------RLRDNKLIVQGTGTSPGWE 190
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1570043776 269 TVVSSDAWATG----AIRSG---TDYSVFHdiygLRGLDVAFYRPRAR--YHTNQDD 316
Cdd:cd05663   191 QLVQARNKATGfkliLDPTGygpSDHTSFY----LDDVPVLHFFTGAHsdYHRPSDD 243
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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