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Concise Results
Standard Results
Full Results
photosystem I core protein PsaB, partial [Cyanobacteria bacterium]
Protein Classification
photosystem I P700 chlorophyll a apoprotein A2 ( domain architecture ID 10000058 )
photosystem I P700 chlorophyll a apoprotein A2 (PsaB), together with PsaA, forms a heterodimer that binds P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX
List of domain hits
Name
Accession
Description
Interval
E-value
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-676
0e+00
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 1430.28
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LWT A GNLFHVAWQGNF PQ W GK DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA S GPVNIA T SGVYQWWYTIG M R S N Q DLY I G 80
Cdd:CHL00054 59 LWT S GNLFHVAWQGNF EA W VQ DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA L GPVNIA Y SGVYQWWYTIG L R T N E DLY T G 138
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 ALFL TI LS GVF L F AGWLHLQPK FQ PS L SWFKNAESRLNHHL A GLFGVSSLAWTGHLVHVAIPESRG Q HVRW D NFL TT LPH 160
Cdd:CHL00054 139 ALFL LF LS ALS L I AGWLHLQPK WK PS V SWFKNAESRLNHHL S GLFGVSSLAWTGHLVHVAIPESRG E HVRW N NFL DV LPH 218
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 PQGL T P F FTG N W AA YAQNPDS AG H V FGT NS G S G N AILTFLGGFHPQTQSLWLTD M AHHHLAIAV L F IL AGHMYRTNFGIG 240
Cdd:CHL00054 219 PQGL G P L FTG Q W NL YAQNPDS SS H L FGT SQ G A G T AILTFLGGFHPQTQSLWLTD I AHHHLAIAV V F LI AGHMYRTNFGIG 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HSM RE IL D AH Q PP A G G LG K GHKGL F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMYSLP P YAF L AQDFTTQA S LYTHHQYI 320
Cdd:CHL00054 299 HSM KD IL E AH I PP G G R LG R GHKGL Y D TI NNSLHFQLG L ALA SL G V I T SLVAQHMYSLP A YAF I AQDFTTQA A LYTHHQYI 378
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 321 AGFI LC GAFAHGAIFFIRDY D PEQN KG NVLAR I LDHKEAIISHLSW V SLFLGFHTLGLYVHNDVM Q AFGTPEKQILIEP V 400
Cdd:CHL00054 379 AGFI MT GAFAHGAIFFIRDY N PEQN ED NVLAR M LDHKEAIISHLSW A SLFLGFHTLGLYVHNDVM L AFGTPEKQILIEP I 458
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 401 FAQWIQS S HGK AL YGFD L LLS ES NSPAF S A SQTL WLPGWL D AIN NSN NSLFLTIGPGDFLVHHAIALGLHTTTLILVK A A 480
Cdd:CHL00054 459 FAQWIQS A HGK TS YGFD V LLS ST NSPAF N A GRSI WLPGWL N AIN ENS NSLFLTIGPGDFLVHHAIALGLHTTTLILVK G A 538
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 481 LDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLAVFWMLNTIGWVTFY F HWKH LGV WQGNV N QFNESSTYLMG 560
Cdd:CHL00054 539 LDARGSKLMPDKKDFGY S FPCDGPGRGGTCDISAWD A FYLAVFWMLNTIGWVTFY W HWKH ITL WQGNV S QFNESSTYLMG 618
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 561 WLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETLAWAHERTPLANL V RWRDKPV 640
Cdd:CHL00054 619 WLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETLAWAHERTPLANL I RWRDKPV 698
650 660 670
....*....|....*....|....*....|....*.
gi 1571454815 641 ALSIVQARLVGLAHFSVGYI L TYAAFLIA A TSGKFG 676
Cdd:CHL00054 699 ALSIVQARLVGLAHFSVGYI F TYAAFLIA S TSGKFG 734
Name
Accession
Description
Interval
E-value
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-676
0e+00
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 1430.28
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LWT A GNLFHVAWQGNF PQ W GK DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA S GPVNIA T SGVYQWWYTIG M R S N Q DLY I G 80
Cdd:CHL00054 59 LWT S GNLFHVAWQGNF EA W VQ DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA L GPVNIA Y SGVYQWWYTIG L R T N E DLY T G 138
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 ALFL TI LS GVF L F AGWLHLQPK FQ PS L SWFKNAESRLNHHL A GLFGVSSLAWTGHLVHVAIPESRG Q HVRW D NFL TT LPH 160
Cdd:CHL00054 139 ALFL LF LS ALS L I AGWLHLQPK WK PS V SWFKNAESRLNHHL S GLFGVSSLAWTGHLVHVAIPESRG E HVRW N NFL DV LPH 218
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 PQGL T P F FTG N W AA YAQNPDS AG H V FGT NS G S G N AILTFLGGFHPQTQSLWLTD M AHHHLAIAV L F IL AGHMYRTNFGIG 240
Cdd:CHL00054 219 PQGL G P L FTG Q W NL YAQNPDS SS H L FGT SQ G A G T AILTFLGGFHPQTQSLWLTD I AHHHLAIAV V F LI AGHMYRTNFGIG 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HSM RE IL D AH Q PP A G G LG K GHKGL F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMYSLP P YAF L AQDFTTQA S LYTHHQYI 320
Cdd:CHL00054 299 HSM KD IL E AH I PP G G R LG R GHKGL Y D TI NNSLHFQLG L ALA SL G V I T SLVAQHMYSLP A YAF I AQDFTTQA A LYTHHQYI 378
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 321 AGFI LC GAFAHGAIFFIRDY D PEQN KG NVLAR I LDHKEAIISHLSW V SLFLGFHTLGLYVHNDVM Q AFGTPEKQILIEP V 400
Cdd:CHL00054 379 AGFI MT GAFAHGAIFFIRDY N PEQN ED NVLAR M LDHKEAIISHLSW A SLFLGFHTLGLYVHNDVM L AFGTPEKQILIEP I 458
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 401 FAQWIQS S HGK AL YGFD L LLS ES NSPAF S A SQTL WLPGWL D AIN NSN NSLFLTIGPGDFLVHHAIALGLHTTTLILVK A A 480
Cdd:CHL00054 459 FAQWIQS A HGK TS YGFD V LLS ST NSPAF N A GRSI WLPGWL N AIN ENS NSLFLTIGPGDFLVHHAIALGLHTTTLILVK G A 538
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 481 LDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLAVFWMLNTIGWVTFY F HWKH LGV WQGNV N QFNESSTYLMG 560
Cdd:CHL00054 539 LDARGSKLMPDKKDFGY S FPCDGPGRGGTCDISAWD A FYLAVFWMLNTIGWVTFY W HWKH ITL WQGNV S QFNESSTYLMG 618
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 561 WLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETLAWAHERTPLANL V RWRDKPV 640
Cdd:CHL00054 619 WLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETLAWAHERTPLANL I RWRDKPV 698
650 660 670
....*....|....*....|....*....|....*.
gi 1571454815 641 ALSIVQARLVGLAHFSVGYI L TYAAFLIA A TSGKFG 676
Cdd:CHL00054 699 ALSIVQARLVGLAHFSVGYI F TYAAFLIA S TSGKFG 734
psaB
TIGR01336 photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, ...
1-676
0e+00
photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130403
Cd Length: 734
Bit Score: 1264.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LWT A GNLFHVAWQGNF P QW GK DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA SG PVNI AT SGVY Q WWYTIGMR S N Q DLY I G 80
Cdd:TIGR01336 58 LWT S GNLFHVAWQGNF E QW IQ DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA NY PVNI SY SGVY H WWYTIGMR T N S DLY A G 137
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 ALFL T IL SGVF LFAGWLHLQPKF Q PSLSWFKNAESRLNHHL A GLFGVSSLAW T GHL V HVAIP E SRGQHV R W D NFL T TLPH 160
Cdd:TIGR01336 138 ALFL L IL AALC LFAGWLHLQPKF K PSLSWFKNAESRLNHHL S GLFGVSSLAW A GHL I HVAIP A SRGQHV G W N NFL S TLPH 217
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P Q GL T PFFTGNW AA YAQNPD S A G HVFGT NS GSG N AILTFLGGFHPQTQSLWLTDMAHHHLAIAV L FI L AGHMYRTNFGIG 240
Cdd:TIGR01336 218 P A GL K PFFTGNW GV YAQNPD T A S HVFGT SQ GSG T AILTFLGGFHPQTQSLWLTDMAHHHLAIAV I FI I AGHMYRTNFGIG 297
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HS MREI L D AH Q PP AG G LGKGHKG - L F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMYSLPPYAF L AQDFTTQA S LYTHHQY 319
Cdd:TIGR01336 298 HS IKDM L E AH K PP PS G KFGLGHK g L Y D TI NNSLHFQLG L ALA CL G V I T SLVAQHMYSLPPYAF I AQDFTTQA A LYTHHQY 377
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 320 IAGF ILC GAFAHGAIFF I RDYDPEQNK G NVL A R I L D HKEAIISHLSWVSLFLGFHTLGLYVHNDV MQ AFGTPEKQILIEP 399
Cdd:TIGR01336 378 IAGF LMV GAFAHGAIFF V RDYDPEQNK D NVL D R M L E HKEAIISHLSWVSLFLGFHTLGLYVHNDV VV AFGTPEKQILIEP 457
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 400 V FAQWIQ SS HGK A LYGF DL LLS ESN S P A FS A SQTL WLPGWLDAIN NSN NSLFLTIGPGDFLVHHAIALGLHTTTLILVK A 479
Cdd:TIGR01336 458 I FAQWIQ AA HGK T LYGF NV LLS SPS S S A TT A YGSV WLPGWLDAIN SNT NSLFLTIGPGDFLVHHAIALGLHTTTLILVK G 537
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 480 ALDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLAVFWMLNTIGWVTFY F HWKH LGV WQGNV N QFNESSTYLM 559
Cdd:TIGR01336 538 ALDARGSKLMPDKKDFGY S FPCDGPGRGGTCDISAWD A FYLAVFWMLNTIGWVTFY W HWKH ITI WQGNV S QFNESSTYLM 617
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 560 GW L RDYLWLNSSQLINGYNP F GMN S LSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETL A WAHERTPLANL V RW R DKP 639
Cdd:TIGR01336 618 GW F RDYLWLNSSQLINGYNP Y GMN N LSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETL V WAHERTPLANL I RW K DKP 697
650 660 670
....*....|....*....|....*....|....*..
gi 1571454815 640 VALSIVQARLVGLAHFSVGY I LTYAAFLIA A T S GKFG 676
Cdd:TIGR01336 698 VALSIVQARLVGLAHFSVGY V LTYAAFLIA S T A GKFG 734
PsaB
COG5702 Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-676
0e+00
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 1190.84
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LW TA GNLFHVAWQGNF P QW GK DPL H VRPIAHAIWDPHFG Q PA V EAFT RG GAS G PVNI AT SG V Y Q WWYTIGMR S N Q DLY I G 80
Cdd:COG5702 59 LW SS GNLFHVAWQGNF E QW IQ DPL N VRPIAHAIWDPHFG K PA I EAFT QA GAS N PVNI CY SG L Y H WWYTIGMR T N T DLY Q G 138
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 AL FL TI L SG V F LFAGWLHLQPKF Q PSL S WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHV R WDNFL T TLPH 160
Cdd:COG5702 139 SI FL LL L AA V M LFAGWLHLQPKF R PSL A WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHV G WDNFL S TLPH 218
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P Q GL T PFFTGNW AA YAQNPD S AGH V FGT NS G S G N AILTFLGGFHPQT Q SLWLTD M AHHHLAIAV L FI L AGHMYRTNFGIG 240
Cdd:COG5702 219 P A GL A PFFTGNW GV YAQNPD T AGH A FGT SQ G A G T AILTFLGGFHPQT E SLWLTD I AHHHLAIAV I FI I AGHMYRTNFGIG 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HS MR EIL D AHQ P P AGGLGKGHKGL ---- F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMY S LPPYAF L AQD F TTQA S LYTH 316
Cdd:COG5702 299 HS IK EIL E AHQ G P GRSGFFKTGLG hkgl Y D TI NNSLHFQLG L ALA CL G V I T SLVAQHMY A LPPYAF I AQD Y TTQA A LYTH 378
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 317 HQYIAGF ILC GAFAHGAIFF I RDYDPE Q NK G NVLAR I L D HKEAIISHLSWVSLFLGFHTLGLYVHNDV MQ AFGTPEKQIL 396
Cdd:COG5702 379 HQYIAGF LMI GAFAHGAIFF V RDYDPE A NK D NVLAR M L E HKEAIISHLSWVSLFLGFHTLGLYVHNDV VV AFGTPEKQIL 458
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 397 IEPVFAQ W IQ SS HGK A LYG F D L LLS ESN S P A FS A --- SQTL WLPGWL D A I NN SN NSLFLTIGPGDFLVHHAIALGLHTTT 473
Cdd:COG5702 459 IEPVFAQ F IQ AA HGK V LYG I D T LLS NPD S V A ST A wpn YGNV WLPGWL E A V NN GA NSLFLTIGPGDFLVHHAIALGLHTTT 538
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 474 LILVK A ALDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLA V FWMLNTIGWVTFY F HWKHL GV W Q GNV N QFNE 553
Cdd:COG5702 539 LILVK G ALDARGSKLMPDKKDFGY A FPCDGPGRGGTCDISAWD S FYLA T FWMLNTIGWVTFY W HWKHL SI W S GNV A QFNE 618
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 554 SSTYLMGW L RDYLW L NS S QLINGY N PFG M NSLSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETL A WAHERTPLANLV 633
Cdd:COG5702 619 SSTYLMGW F RDYLW A NS A QLINGY S PFG T NSLSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETL V WAHERTPLANLV 698
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1571454815 634 RW R DKPVALSIVQARLVGL A HF S VGYI L TYAAFLIA A T SGK F G 676
Cdd:COG5702 699 RW K DKPVALSIVQARLVGL T HF T VGYI V TYAAFLIA S T ASL F P 741
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
1-669
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 1033.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LW TA GNLFH V AW QG NF PQ W GK DPLHV R PIAH AI W d PHFGQ PAVE AFT RG GA SG P VNIA TSG VY QWW Y TIGM RS N QD LY I G 80
Cdd:pfam00223 52 LW LS GNLFH G AW FS NF EA W LA DPLHV K PIAH VV W - PHFGQ EILN AFT DV GA GF P GVQI TSG LF QWW R TIGM TT N GQ LY A G 130
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 A LF L T IL SGVF LFAGWLH LQ p KF Q P S L S WFKNAES R LNHHLAGLFG VS SLAWTGHL V HVAIPESR GQHVRWDNFLTT LPH 160
Cdd:pfam00223 131 A IG L L IL AALM LFAGWLH YH - KF A P K L E WFKNAES M LNHHLAGLFG LG SLAWTGHL I HVAIPESR LLDAGVAAADIP LPH 209
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P --------------- Q GL T PFFTGNW A AYA Q npdsaghvfgtnsgsgna ILTF L GG F HPQT Q SLWLTD M AHHHLAIAVL 225
Cdd:pfam00223 210 P flnpdlmgqlypsfa A GL G PFFTGNW G AYA D ------------------ ILTF K GG L HPQT G SLWLTD I AHHHLAIAVL 271
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 226 FI L AGHMYRTNFGIGHSM R EIL D AH QP P A G GL G K GHKGL FDQ LNNS L H F QLG FA LA AV G TICSL VA Q HMY S LPPY AFL A Q 305
Cdd:pfam00223 272 FI I AGHMYRTNFGIGHSM K EIL E AH KG P G G FT G E GHKGL YET LNNS W H A QLG LN LA ML G SVTII VA H HMY A LPPY PYI A T 351
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 306 D F TTQA S L Y THHQ Y I A GF ILC GAFAHGAIF FI RDYDPE Q NK G NVL A R I L D H KE AIISHLSWV S LFLGFHT L GLYVHND V M 385
Cdd:pfam00223 352 D Y TTQA A L F THHQ W I G GF LMV GAFAHGAIF MV RDYDPE V NK N NVL D R V L E H RD AIISHLSWV C LFLGFHT F GLYVHND T M 431
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 386 Q AFG T PE KQ ----- IL I EPVFAQWIQ SS HGKALYGF D LL L S ESN S P A FS A --- SQTL WLPG WLDAINNSNNSLFLTI G PG 457
Cdd:pfam00223 432 R AFG R PE DM fsdta IL L EPVFAQWIQ AA HGKALYGF N LL A S APG S T A PN A gag VSDV WLPG DAVNVGGKVSLFPIPL G TA 511
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 458 DFLVHH A IA L G L H T T T LIL V K AA LDAR G S K LMPDKKD F G YT FPCDGPGRGGTC D ISAWD GFY L AV FWM L NTI G WV T FYFH 537
Cdd:pfam00223 512 DFLVHH I IA F G I H V T V LIL L K GV LDAR S S R LMPDKKD L G FR FPCDGPGRGGTC Q ISAWD HVF L GL FWM Y NTI S WV I FYFH 591
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 538 WK HLG - VW Q GNV N --- QF NE SS T Y LM GWLRD Y LW LN SSQ L IN G Y N pfgm NSLSV WAW MFL F GH L V Y A TGF MFL I S W RGYW 613
Cdd:pfam00223 592 WK MQS d VW G GNV I tgg QF AQ SS I Y IN GWLRD F LW AQ SSQ V IN S Y G ---- NSLSV YGL MFL G GH F V W A FSL MFL F S G RGYW 667
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1571454815 614 QELIE TLA WAH ERTP LA N L V rwrd K P V ALSIVQ A R L VG L AHF SV G Y I L T YA AF L IA 669
Cdd:pfam00223 668 QELIE SIV WAH NKLK LA P L I ---- Q P R ALSIVQ G R A VG V AHF LL G G I V T TW AF F IA 719
Name
Accession
Description
Interval
E-value
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-676
0e+00
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 1430.28
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LWT A GNLFHVAWQGNF PQ W GK DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA S GPVNIA T SGVYQWWYTIG M R S N Q DLY I G 80
Cdd:CHL00054 59 LWT S GNLFHVAWQGNF EA W VQ DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA L GPVNIA Y SGVYQWWYTIG L R T N E DLY T G 138
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 ALFL TI LS GVF L F AGWLHLQPK FQ PS L SWFKNAESRLNHHL A GLFGVSSLAWTGHLVHVAIPESRG Q HVRW D NFL TT LPH 160
Cdd:CHL00054 139 ALFL LF LS ALS L I AGWLHLQPK WK PS V SWFKNAESRLNHHL S GLFGVSSLAWTGHLVHVAIPESRG E HVRW N NFL DV LPH 218
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 PQGL T P F FTG N W AA YAQNPDS AG H V FGT NS G S G N AILTFLGGFHPQTQSLWLTD M AHHHLAIAV L F IL AGHMYRTNFGIG 240
Cdd:CHL00054 219 PQGL G P L FTG Q W NL YAQNPDS SS H L FGT SQ G A G T AILTFLGGFHPQTQSLWLTD I AHHHLAIAV V F LI AGHMYRTNFGIG 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HSM RE IL D AH Q PP A G G LG K GHKGL F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMYSLP P YAF L AQDFTTQA S LYTHHQYI 320
Cdd:CHL00054 299 HSM KD IL E AH I PP G G R LG R GHKGL Y D TI NNSLHFQLG L ALA SL G V I T SLVAQHMYSLP A YAF I AQDFTTQA A LYTHHQYI 378
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 321 AGFI LC GAFAHGAIFFIRDY D PEQN KG NVLAR I LDHKEAIISHLSW V SLFLGFHTLGLYVHNDVM Q AFGTPEKQILIEP V 400
Cdd:CHL00054 379 AGFI MT GAFAHGAIFFIRDY N PEQN ED NVLAR M LDHKEAIISHLSW A SLFLGFHTLGLYVHNDVM L AFGTPEKQILIEP I 458
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 401 FAQWIQS S HGK AL YGFD L LLS ES NSPAF S A SQTL WLPGWL D AIN NSN NSLFLTIGPGDFLVHHAIALGLHTTTLILVK A A 480
Cdd:CHL00054 459 FAQWIQS A HGK TS YGFD V LLS ST NSPAF N A GRSI WLPGWL N AIN ENS NSLFLTIGPGDFLVHHAIALGLHTTTLILVK G A 538
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 481 LDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLAVFWMLNTIGWVTFY F HWKH LGV WQGNV N QFNESSTYLMG 560
Cdd:CHL00054 539 LDARGSKLMPDKKDFGY S FPCDGPGRGGTCDISAWD A FYLAVFWMLNTIGWVTFY W HWKH ITL WQGNV S QFNESSTYLMG 618
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 561 WLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETLAWAHERTPLANL V RWRDKPV 640
Cdd:CHL00054 619 WLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETLAWAHERTPLANL I RWRDKPV 698
650 660 670
....*....|....*....|....*....|....*.
gi 1571454815 641 ALSIVQARLVGLAHFSVGYI L TYAAFLIA A TSGKFG 676
Cdd:CHL00054 699 ALSIVQARLVGLAHFSVGYI F TYAAFLIA S TSGKFG 734
psaB
TIGR01336 photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, ...
1-676
0e+00
photosystem I core protein PsaB; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaB only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130403
Cd Length: 734
Bit Score: 1264.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LWT A GNLFHVAWQGNF P QW GK DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA SG PVNI AT SGVY Q WWYTIGMR S N Q DLY I G 80
Cdd:TIGR01336 58 LWT S GNLFHVAWQGNF E QW IQ DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA NY PVNI SY SGVY H WWYTIGMR T N S DLY A G 137
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 ALFL T IL SGVF LFAGWLHLQPKF Q PSLSWFKNAESRLNHHL A GLFGVSSLAW T GHL V HVAIP E SRGQHV R W D NFL T TLPH 160
Cdd:TIGR01336 138 ALFL L IL AALC LFAGWLHLQPKF K PSLSWFKNAESRLNHHL S GLFGVSSLAW A GHL I HVAIP A SRGQHV G W N NFL S TLPH 217
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P Q GL T PFFTGNW AA YAQNPD S A G HVFGT NS GSG N AILTFLGGFHPQTQSLWLTDMAHHHLAIAV L FI L AGHMYRTNFGIG 240
Cdd:TIGR01336 218 P A GL K PFFTGNW GV YAQNPD T A S HVFGT SQ GSG T AILTFLGGFHPQTQSLWLTDMAHHHLAIAV I FI I AGHMYRTNFGIG 297
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HS MREI L D AH Q PP AG G LGKGHKG - L F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMYSLPPYAF L AQDFTTQA S LYTHHQY 319
Cdd:TIGR01336 298 HS IKDM L E AH K PP PS G KFGLGHK g L Y D TI NNSLHFQLG L ALA CL G V I T SLVAQHMYSLPPYAF I AQDFTTQA A LYTHHQY 377
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 320 IAGF ILC GAFAHGAIFF I RDYDPEQNK G NVL A R I L D HKEAIISHLSWVSLFLGFHTLGLYVHNDV MQ AFGTPEKQILIEP 399
Cdd:TIGR01336 378 IAGF LMV GAFAHGAIFF V RDYDPEQNK D NVL D R M L E HKEAIISHLSWVSLFLGFHTLGLYVHNDV VV AFGTPEKQILIEP 457
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 400 V FAQWIQ SS HGK A LYGF DL LLS ESN S P A FS A SQTL WLPGWLDAIN NSN NSLFLTIGPGDFLVHHAIALGLHTTTLILVK A 479
Cdd:TIGR01336 458 I FAQWIQ AA HGK T LYGF NV LLS SPS S S A TT A YGSV WLPGWLDAIN SNT NSLFLTIGPGDFLVHHAIALGLHTTTLILVK G 537
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 480 ALDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLAVFWMLNTIGWVTFY F HWKH LGV WQGNV N QFNESSTYLM 559
Cdd:TIGR01336 538 ALDARGSKLMPDKKDFGY S FPCDGPGRGGTCDISAWD A FYLAVFWMLNTIGWVTFY W HWKH ITI WQGNV S QFNESSTYLM 617
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 560 GW L RDYLWLNSSQLINGYNP F GMN S LSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETL A WAHERTPLANL V RW R DKP 639
Cdd:TIGR01336 618 GW F RDYLWLNSSQLINGYNP Y GMN N LSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETL V WAHERTPLANL I RW K DKP 697
650 660 670
....*....|....*....|....*....|....*..
gi 1571454815 640 VALSIVQARLVGLAHFSVGY I LTYAAFLIA A T S GKFG 676
Cdd:TIGR01336 698 VALSIVQARLVGLAHFSVGY V LTYAAFLIA S T A GKFG 734
PsaB
COG5702 Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-676
0e+00
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 1190.84
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LW TA GNLFHVAWQGNF P QW GK DPL H VRPIAHAIWDPHFG Q PA V EAFT RG GAS G PVNI AT SG V Y Q WWYTIGMR S N Q DLY I G 80
Cdd:COG5702 59 LW SS GNLFHVAWQGNF E QW IQ DPL N VRPIAHAIWDPHFG K PA I EAFT QA GAS N PVNI CY SG L Y H WWYTIGMR T N T DLY Q G 138
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 AL FL TI L SG V F LFAGWLHLQPKF Q PSL S WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHV R WDNFL T TLPH 160
Cdd:COG5702 139 SI FL LL L AA V M LFAGWLHLQPKF R PSL A WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHV G WDNFL S TLPH 218
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P Q GL T PFFTGNW AA YAQNPD S AGH V FGT NS G S G N AILTFLGGFHPQT Q SLWLTD M AHHHLAIAV L FI L AGHMYRTNFGIG 240
Cdd:COG5702 219 P A GL A PFFTGNW GV YAQNPD T AGH A FGT SQ G A G T AILTFLGGFHPQT E SLWLTD I AHHHLAIAV I FI I AGHMYRTNFGIG 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 241 HS MR EIL D AHQ P P AGGLGKGHKGL ---- F D QL NNSLHFQLG F ALA AV G T I C SLVAQHMY S LPPYAF L AQD F TTQA S LYTH 316
Cdd:COG5702 299 HS IK EIL E AHQ G P GRSGFFKTGLG hkgl Y D TI NNSLHFQLG L ALA CL G V I T SLVAQHMY A LPPYAF I AQD Y TTQA A LYTH 378
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 317 HQYIAGF ILC GAFAHGAIFF I RDYDPE Q NK G NVLAR I L D HKEAIISHLSWVSLFLGFHTLGLYVHNDV MQ AFGTPEKQIL 396
Cdd:COG5702 379 HQYIAGF LMI GAFAHGAIFF V RDYDPE A NK D NVLAR M L E HKEAIISHLSWVSLFLGFHTLGLYVHNDV VV AFGTPEKQIL 458
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 397 IEPVFAQ W IQ SS HGK A LYG F D L LLS ESN S P A FS A --- SQTL WLPGWL D A I NN SN NSLFLTIGPGDFLVHHAIALGLHTTT 473
Cdd:COG5702 459 IEPVFAQ F IQ AA HGK V LYG I D T LLS NPD S V A ST A wpn YGNV WLPGWL E A V NN GA NSLFLTIGPGDFLVHHAIALGLHTTT 538
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 474 LILVK A ALDARGSKLMPDKKDFGY T FPCDGPGRGGTCDISAWD G FYLA V FWMLNTIGWVTFY F HWKHL GV W Q GNV N QFNE 553
Cdd:COG5702 539 LILVK G ALDARGSKLMPDKKDFGY A FPCDGPGRGGTCDISAWD S FYLA T FWMLNTIGWVTFY W HWKHL SI W S GNV A QFNE 618
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 554 SSTYLMGW L RDYLW L NS S QLINGY N PFG M NSLSVWAWMFLFGHLV Y ATGFMFLISWRGYWQELIETL A WAHERTPLANLV 633
Cdd:COG5702 619 SSTYLMGW F RDYLW A NS A QLINGY S PFG T NSLSVWAWMFLFGHLV W ATGFMFLISWRGYWQELIETL V WAHERTPLANLV 698
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1571454815 634 RW R DKPVALSIVQARLVGL A HF S VGYI L TYAAFLIA A T SGK F G 676
Cdd:COG5702 699 RW K DKPVALSIVQARLVGL T HF T VGYI V TYAAFLIA S T ASL F P 741
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
1-669
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 1033.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LW TA GNLFH V AW QG NF PQ W GK DPLHV R PIAH AI W d PHFGQ PAVE AFT RG GA SG P VNIA TSG VY QWW Y TIGM RS N QD LY I G 80
Cdd:pfam00223 52 LW LS GNLFH G AW FS NF EA W LA DPLHV K PIAH VV W - PHFGQ EILN AFT DV GA GF P GVQI TSG LF QWW R TIGM TT N GQ LY A G 130
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 A LF L T IL SGVF LFAGWLH LQ p KF Q P S L S WFKNAES R LNHHLAGLFG VS SLAWTGHL V HVAIPESR GQHVRWDNFLTT LPH 160
Cdd:pfam00223 131 A IG L L IL AALM LFAGWLH YH - KF A P K L E WFKNAES M LNHHLAGLFG LG SLAWTGHL I HVAIPESR LLDAGVAAADIP LPH 209
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P --------------- Q GL T PFFTGNW A AYA Q npdsaghvfgtnsgsgna ILTF L GG F HPQT Q SLWLTD M AHHHLAIAVL 225
Cdd:pfam00223 210 P flnpdlmgqlypsfa A GL G PFFTGNW G AYA D ------------------ ILTF K GG L HPQT G SLWLTD I AHHHLAIAVL 271
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 226 FI L AGHMYRTNFGIGHSM R EIL D AH QP P A G GL G K GHKGL FDQ LNNS L H F QLG FA LA AV G TICSL VA Q HMY S LPPY AFL A Q 305
Cdd:pfam00223 272 FI I AGHMYRTNFGIGHSM K EIL E AH KG P G G FT G E GHKGL YET LNNS W H A QLG LN LA ML G SVTII VA H HMY A LPPY PYI A T 351
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 306 D F TTQA S L Y THHQ Y I A GF ILC GAFAHGAIF FI RDYDPE Q NK G NVL A R I L D H KE AIISHLSWV S LFLGFHT L GLYVHND V M 385
Cdd:pfam00223 352 D Y TTQA A L F THHQ W I G GF LMV GAFAHGAIF MV RDYDPE V NK N NVL D R V L E H RD AIISHLSWV C LFLGFHT F GLYVHND T M 431
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 386 Q AFG T PE KQ ----- IL I EPVFAQWIQ SS HGKALYGF D LL L S ESN S P A FS A --- SQTL WLPG WLDAINNSNNSLFLTI G PG 457
Cdd:pfam00223 432 R AFG R PE DM fsdta IL L EPVFAQWIQ AA HGKALYGF N LL A S APG S T A PN A gag VSDV WLPG DAVNVGGKVSLFPIPL G TA 511
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 458 DFLVHH A IA L G L H T T T LIL V K AA LDAR G S K LMPDKKD F G YT FPCDGPGRGGTC D ISAWD GFY L AV FWM L NTI G WV T FYFH 537
Cdd:pfam00223 512 DFLVHH I IA F G I H V T V LIL L K GV LDAR S S R LMPDKKD L G FR FPCDGPGRGGTC Q ISAWD HVF L GL FWM Y NTI S WV I FYFH 591
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 538 WK HLG - VW Q GNV N --- QF NE SS T Y LM GWLRD Y LW LN SSQ L IN G Y N pfgm NSLSV WAW MFL F GH L V Y A TGF MFL I S W RGYW 613
Cdd:pfam00223 592 WK MQS d VW G GNV I tgg QF AQ SS I Y IN GWLRD F LW AQ SSQ V IN S Y G ---- NSLSV YGL MFL G GH F V W A FSL MFL F S G RGYW 667
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1571454815 614 QELIE TLA WAH ERTP LA N L V rwrd K P V ALSIVQ A R L VG L AHF SV G Y I L T YA AF L IA 669
Cdd:pfam00223 668 QELIE SIV WAH NKLK LA P L I ---- Q P R ALSIVQ G R A VG V AHF LL G G I V T TW AF F IA 719
PsaA
COG5701 Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-669
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 606.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 L W TA G NL FH V A WQG N FPQ W GK DP LH V R P I A HAI W d P HF GQ PAVE A FTR GG AS G p VN I a TSG VY Q W W YTI G MRSNQD LY IG 80
Cdd:COG5701 85 I W LS G MF FH G A RFS N YTA W LA DP TG V K P S A QVV W - P IV GQ EILN A DVG GG FH G - IQ I - TSG LF Q M W RAW G ITNEFQ LY CT 161
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 A LFLTILSGVF LFAGW L H LQ p K FQ P S L S WF K N A ES R LNHHLAGL F G VS SLAWTGHL V HV AI P ESR ------------ GQ H 148
Cdd:COG5701 162 A IGALVMAALM LFAGW F H YH - K RA P K L E WF Q N V ES M LNHHLAGL L G LG SLAWTGHL I HV SL P VNA lldagvaaadip LP H 240
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 149 VRWDNF L TTLPH P --- Q G LT PFFT G NW A A YAQ npdsaghvfgtnsgsgna I LTF L GG FH P Q T QS LWLTD M AHHHLAIAVL 225
Cdd:COG5701 241 EFLNPS L MAQLY P gfa S G VG PFFT L NW G A FSD ------------------ F LTF K GG LN P V T GG LWLTD I AHHHLAIAVL 302
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 226 FI L AGHMYRTN F GIGHSM R EIL D AH QP P AGGLGKGHKG -- L FDQ L NN S L H F QL GFA LA AV G TICSL VA Q HMY SL PPY AF L 303
Cdd:COG5701 303 FI I AGHMYRTN W GIGHSM K EIL E AH KG P PLLFTGPEGH kg L YEV L TT S W H A QL AIN LA MM G SLSII VA H HMY AM PPY PY L 382
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 304 A Q D FT TQ A SL Y THH QY I A GF ILC GA F AH G AIF FI RDYDP EQ N KG NVL A R I L D H KE AIISHL S WV SL FLGFH TL GLY V HND 383
Cdd:COG5701 383 A T D YP TQ L SL F THH MW I G GF LIV GA A AH A AIF MV RDYDP AV N QN NVL D R V L R H RD AIISHL N WV CI FLGFH SF GLY I HND 462
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 384 V M Q A F G T P EKQ ----- I LIE PVFAQWIQ SS H GK A LYG fdlllse SNS P AFSASQTLWLP G WLD A INNSNNSLFLTI G PG D 458
Cdd:COG5701 463 T M R A L G R P QDM fsdta I QLQ PVFAQWIQ NL H AS A PGT ------- ATA P NAGGTVSEAFG G DVV A VGGKVAMMPIPL G TA D 535
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 459 F LV HH AI A LGL H T T T LIL V K AA L D AR G S K L M PDK KDF G YT FPCDGPGRGGTC DI SAWD GFY L AV FWM L N TIGW V T F Y F H W 538
Cdd:COG5701 536 F MI HH IH A FTI H V T V LIL L K GV L F AR S S R L I PDK ANL G FR FPCDGPGRGGTC QV SAWD HVF L GL FWM Y N SLSV V I F H F S W 615
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 539 K - HLG VW ----- Q G N VN ----- Q F NE SS TYLM GWLRD Y LW LN SSQ L IN G Y N pfgm NS LS VWAW MFL FG H L V Y A TGF MFL I 607
Cdd:COG5701 616 K m QSD VW gtvna D G S VN hitgg N F AQ SS ITIN GWLRD F LW AQ SSQ V IN S Y G ---- SA LS AYGL MFL GA H F V W A FSL MFL F 691
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1571454815 608 S W RGYWQELIE TLA WAH ERTPL A NLV rwrd K P V ALSI V Q A R L VG L AH FSV G Y I L T YA AF LI A 669
Cdd:COG5701 692 S G RGYWQELIE SIV WAH NKLKV A PAI ---- Q P R ALSI T Q G R A VG V AH YLL G G I A T TW AF FL A 749
psaA
CHL00056 photosystem I P700 chlorophyll a apoprotein A1
1-669
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 600.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 LW TA G NL FH V A WQG N FPQ W GK DP L H VR P I A HAI W d P HF GQ PAVEAFTR GG AS G p VN I a TSG VY Q W W YTI G MR S NQD LY IG 80
Cdd:CHL00056 83 LW LS G MY FH G A RFS N YEA W LS DP T H IK P S A QVV W - P IV GQ EILNGDVG GG FR G - IQ I - TSG FF Q I W RAS G IT S ELQ LY CT 159
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 A LFLTILSGVF LFAGW L H LQ p K FQ P S L S WF KNA ES R LNHHLAGL F G VS SL A W T GH LV HV AI P ESRGQHVRW D NFLTT LPH 160
Cdd:CHL00056 160 A IGALVFAALM LFAGW F H YH - K AA P K L A WF QDV ES M LNHHLAGL L G LG SL S W A GH QI HV SL P INQLLDAGV D PKEIP LPH 238
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 ---------------- PQ GLTPFFT G NW AA Y AQ npdsaghvfgtnsgsgna I LTF L GG FH P Q T QS LWLTD M AHHHLAIAV 224
Cdd:CHL00056 239 efilnrdllaqlypsf AK GLTPFFT L NW SE Y SD ------------------ F LTF R GG LN P V T GG LWLTD I AHHHLAIAV 300
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 225 LF IL AGHMYRTN F GIGHS MR EIL D AH QP P ag GL G K GHKGL FDQ L NN S L H F QL GFA LA AV G TICSL VA Q HMYS L PPY AF LA 304
Cdd:CHL00056 301 LF LI AGHMYRTN W GIGHS LK EIL E AH KG P -- FT G E GHKGL YEI L TT S W H A QL ALN LA ML G SLTII VA H HMYS M PPY PY LA 378
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 305 Q D FT TQ A SL Y THH QY I A GF ILC GA F AH G AIF FI RDYDP EQNKG N V L A R I L D H KE AIISHL S WV SL FLGFH TL GLY V HND V 384
Cdd:CHL00056 379 T D YG TQ L SL F THH MW I G GF LIV GA A AH A AIF MV RDYDP TTRYN N L L D R V L R H RD AIISHL N WV CI FLGFH SF GLY I HND T 458
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 385 M Q A F G T P E ----- KQ I LIE P V FAQWIQ SS H gkalygfd L L LSESNS P AFS AS QT L - W LP G W L D A INNSNNS L FLTI G PG D 458
Cdd:CHL00056 459 M S A L G R P Q dmfsd TA I QLQ P I FAQWIQ NT H -------- A L APGATA P GAT AS TS L t W GG G D L V A VGGKVAL L PIPL G TA D 530
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 459 FLVHH AI A LGL H T T T LIL V K AA L D AR G S K L M PDK KDF G YT FPCDGPGRGGTC DI SAWD GFY L AV FWM L N T I GW V T F Y F H W 538
Cdd:CHL00056 531 FLVHH IH A FTI H V T V LIL L K GV L F AR S S R L I PDK ANL G FR FPCDGPGRGGTC QV SAWD HVF L GL FWM Y N S I SV V I F H F S W 610
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 539 K - HLG VW ----- QG N V NQ ----- F NE SS TYLM GWLRD Y LW LNS SQ L I NG Y N pfgm N SLS VWAWM FL FG H L V Y A TGF MFL I 607
Cdd:CHL00056 611 K m QSD VW gsisd QG V V TH itggn F AQ SS ITIN GWLRD F LW AQA SQ V I QS Y G ---- S SLS AYGLF FL GA H F V W A FSL MFL F 686
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1571454815 608 S W RGYWQELIE TLA WAH ERTPL A NLV rwrd K P V ALSIVQ A R L VG L AH FSV G Y I L T YA AF LI A 669
Cdd:CHL00056 687 S G RGYWQELIE SIV WAH NKLKV A PAI ---- Q P R ALSIVQ G R A VG V AH YLL G G I A T TW AF FL A 744
psaA
TIGR01335 photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-669
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 585.77
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 1 L W TA G NL FH V A WQG N FPQ W GK DP L H VR P I A HAI W d P HF GQ PAVEAFTR GG AS G p VN I a TSG VY Q W W YTI G MRSNQD LY IG 80
Cdd:TIGR01335 86 I W LS G MY FH G A RFS N YEA W LS DP T H IK P S A QVV W - P IV GQ EILNGDVG GG FH G - IQ I - TSG FF Q L W RAS G ITNELQ LY VT 162
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 81 A LFLTILS G VF LFAGW L H LQ p K FQ P S L S WF K N A ES R LNHHLAGL F G VS SL A W T GH LV HV AI P ESRGQHVRW D NFLTT LPH 160
Cdd:TIGR01335 163 A IGGLVMA G LM LFAGW F H YH - K AA P K L E WF Q N V ES M LNHHLAGL L G LG SL S W A GH QI HV SL P INKLLDAGV D PKDIP LPH 241
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 161 P ---------------- Q GLTPFFT G NW A AY AQ npdsaghvfgtnsgsgna I LTF L GG FH P Q T QS LWL T D M AHHHLAIAV 224
Cdd:TIGR01335 242 E filnrelmaqlypsfa S GLTPFFT L NW G AY SD ------------------ F LTF R GG LN P V T GG LWL S D I AHHHLAIAV 303
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 225 LFI L AGHMYRTN F GIGHS MR EIL D AH QP P ag GL G K GHKGL FDQ L NN S L H F QL GFA LA AV G TICSL VA Q HMY SL PPY AF LA 304
Cdd:TIGR01335 304 LFI I AGHMYRTN W GIGHS IK EIL E AH KG P -- FT G S GHKGL YEA L TT S W H A QL AIN LA ML G SLSII VA H HMY AM PPY PY LA 381
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 305 Q D FT TQ A SL Y THH QY I A GF ILC GA F AHGAIF FI RDYDP E QN KG NVL A R ILD H KE AIISHL S WV SL FLGFH TL GLY V HND V 384
Cdd:TIGR01335 382 T D YP TQ L SL F THH MW I G GF LIV GA A AHGAIF MV RDYDP S QN YN NVL D R VIR H RD AIISHL N WV CI FLGFH SF GLY I HND T 461
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 385 M Q A F G T P EKQ ----- I LIE PVFAQWIQ SS H G kalygfdl L LSESNS P AFS A SQTLWLP G WLD A INNSNNSLFLTI G PG DF 459
Cdd:TIGR01335 462 M R A L G R P QDM fsdta I QLQ PVFAQWIQ NL H T -------- L APGNTA P NAL A TTSYAFG G EVV A VGGKVAMMPIKL G TA DF 533
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 460 L VHH AI A LGL H T T T LIL V K AA L D AR G S K L M PDK KDF G YT FPCDGPGRGGTC DI S A WD GFY L AV FWM L N T I GW V T F Y F H WK 539
Cdd:TIGR01335 534 M VHH IH A FTI H V T V LIL L K GV L F AR N S R L I PDK ANL G FR FPCDGPGRGGTC QV S G WD HVF L GL FWM Y N C I SV V I F H F S WK 613
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1571454815 540 - HLG VW ----- Q G N V NQ ----- F NE S STYLM GWLRD Y LW LNS SQ L I NG Y N pfgm N SLS VWAW MFL FG H LVY A TGF MFL I S 608
Cdd:TIGR01335 614 m QSD VW gtvsq N G L V SH itggn F AQ S AITIN GWLRD F LW AQA SQ V I QS Y G ---- S SLS AYGL MFL GA H FIW A FSL MFL F S 689
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1571454815 609 W RGYWQELIE TLA WAH ERTPL A NLV rwrd K P V ALSI V Q A R L VG L AH FSV G Y I L T YA AF LI A 669
Cdd:TIGR01335 690 G RGYWQELIE SIV WAH NKLKV A PAI ---- Q P R ALSI I Q G R A VG V AH YLL G G I A T TW AF FL A 746
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
