NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1573864740|gb|RZD54173|]
View 

MAG: cytochrome B6 [Methanobacteriota archaeon]

Protein Classification

cytochrome b( domain architecture ID 11441733)

cytochrome b is a heme-binding component of cytochrome complexes such as the bc1 complex, a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0020037|GO:0008121
PubMed:  2509716|8647838
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-243 8.37e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


:

Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 224.28  E-value: 8.37e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  14 WLDTRFRIQDYWGmsrdayysmhrqmplTHAEKYKLRiiwYWYPLYCLGGISFLAFVILVITGTILGLYYVPggegDPTP 93
Cdd:COG1290    13 WLDERLPLASLVR---------------EHLEYPFPK---NWNFSYWFGELALYSFVIQILTGIFLTMYYKP----SASE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  94 AYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLA 173
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 174 FGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLHLWLLHRHGHNNP 220
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-243 8.37e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 224.28  E-value: 8.37e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  14 WLDTRFRIQDYWGmsrdayysmhrqmplTHAEKYKLRiiwYWYPLYCLGGISFLAFVILVITGTILGLYYVPggegDPTP 93
Cdd:COG1290    13 WLDERLPLASLVR---------------EHLEYPFPK---NWNFSYWFGELALYSFVIQILTGIFLTMYYKP----SASE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  94 AYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLA 173
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 174 FGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLHLWLLHRHGHNNP 220
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
59-243 2.94e-68

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 209.07  E-value: 2.94e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  59 YCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGA 138
Cdd:NF040969   25 WCLGGLTFLLFVILTVTGIFLMFYYVP----TPEAAYESVQYLQNEVAFGQLVRNMHHWAANLMVVMVFLHMLRVFYTGS 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 139 YRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVF 218
Cdd:NF040969  101 YKPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLGGSEVGAATLTRFYALHVF 180

                         170       180
                  ....*....|....*....|....*
gi 1573864740 219 ILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:NF040969  181 VLPAALIILMAAHFWRIRKQGISGP 205
PRK03735 PRK03735
cytochrome b6; Provisional
 12-243 2.65e-58

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 184.14  E-value: 2.65e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  12 FSWLDTRFRIQDYWGMSRDAYYSMHRQmPLTHAEKYklriiwywypLYCLGGISFLAFVILVITGTILGLYYVPggegDP 91
Cdd:PRK03735    6 YDWFDERLDITPIWRDIADHEVPEHVN-PAHHFSAF----------VYCFGGLTFFCFVIQILSGMFLTMYYVP----DI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  92 TPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDS 171
Cdd:PRK03735   71 KNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQ 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1573864740 172 LAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:PRK03735  151 KAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLPWALAVLMLAHFLMIRKQGISGP 222
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-240 1.53e-38

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 132.88  E-value: 1.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  58 LYCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTG 137
Cdd:cd00284    22 WWNFGSLLGTCLVIQILTGVFLAMHYTP----DVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 138 AYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHv 217
Cdd:cd00284    98 SYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALH- 176

                         170       180
                  ....*....|....*....|...
gi 1573864740 218 FILPVIVTALILVHLFIVWVQGI 240
Cdd:cd00284   177 FLLPFIIAVIVILHLLFLHEQGS 199
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
120-243 7.26e-37

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 127.74  E-value: 7.26e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 120 HFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMF 199
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1573864740 200 AGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLPGLILALIVAHLLLVEKHGQFPP 124
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
14-243 8.37e-72

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 224.28  E-value: 8.37e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  14 WLDTRFRIQDYWGmsrdayysmhrqmplTHAEKYKLRiiwYWYPLYCLGGISFLAFVILVITGTILGLYYVPggegDPTP 93
Cdd:COG1290    13 WLDERLPLASLVR---------------EHLEYPFPK---NWNFSYWFGELALYSFVIQILTGIFLTMYYKP----SASE 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  94 AYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLA 173
Cdd:COG1290    71 AFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 174 FGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:COG1290   151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLHLWLLHRHGHNNP 220
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
59-243 2.94e-68

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 209.07  E-value: 2.94e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  59 YCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGA 138
Cdd:NF040969   25 WCLGGLTFLLFVILTVTGIFLMFYYVP----TPEAAYESVQYLQNEVAFGQLVRNMHHWAANLMVVMVFLHMLRVFYTGS 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 139 YRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVF 218
Cdd:NF040969  101 YKPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLGGSEVGAATLTRFYALHVF 180

                         170       180
                  ....*....|....*....|....*
gi 1573864740 219 ILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:NF040969  181 VLPAALIILMAAHFWRIRKQGISGP 205
PRK03735 PRK03735
cytochrome b6; Provisional
 12-243 2.65e-58

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 184.14  E-value: 2.65e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  12 FSWLDTRFRIQDYWGMSRDAYYSMHRQmPLTHAEKYklriiwywypLYCLGGISFLAFVILVITGTILGLYYVPggegDP 91
Cdd:PRK03735    6 YDWFDERLDITPIWRDIADHEVPEHVN-PAHHFSAF----------VYCFGGLTFFCFVIQILSGMFLTMYYVP----DI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  92 TPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDS 171
Cdd:PRK03735   71 KNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQ 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1573864740 172 LAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:PRK03735  151 KAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 59-243 9.15e-47

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 154.49  E-value: 9.15e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  59 YCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGA 138
Cdd:CHL00070   34 YCLGGITLTCFLVQVATGFAMTFYYRP----TVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 139 YRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHVF 218
Cdd:CHL00070  110 FKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHTF 189

                         170       180
                  ....*....|....*....|....*
gi 1573864740 219 ILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:CHL00070  190 VLPLLTAVFMLMHFLMIRKQGISGP 214
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-240 1.53e-38

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 132.88  E-value: 1.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  58 LYCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTG 137
Cdd:cd00284    22 WWNFGSLLGTCLVIQILTGVFLAMHYTP----DVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 138 AYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHv 217
Cdd:cd00284    98 SYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALH- 176

                         170       180
                  ....*....|....*....|...
gi 1573864740 218 FILPVIVTALILVHLFIVWVQGI 240
Cdd:cd00284   177 FLLPFIIAVIVILHLLFLHEQGS 199
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
120-243 7.26e-37

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 127.74  E-value: 7.26e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 120 HFMVASVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMF 199
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1573864740 200 AGTSLSGQTVTRMYFLHVFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLPGLILALIVAHLLLVEKHGQFPP 124
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
59-239 5.21e-35

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 123.65  E-value: 5.21e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  59 YCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGA 138
Cdd:pfam00033  14 YNFGSLLGLCLAVQILTGVFLAFYYTP----DVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 139 YRNPRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvF 218
Cdd:pfam00033  90 FSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLH-F 168

                         170       180
                  ....*....|....*....|.
gi 1573864740 219 ILPVIVTALILVHLFIVWVQG 239
Cdd:pfam00033 169 LLPFILAILMLLHLLFLHETG 189
CYTB MTH00016
cytochrome b; Validated
 62-233 2.23e-23

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 97.06  E-value: 2.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  62 GGISFLAFVILVITGTILGLYYVPGGEgdptPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRN 141
Cdd:MTH00016   35 GSLLGLCLVIQILTGLFLSMHYTPHID----LAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 142 PRelNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILP 221
Cdd:MTH00016  111 ME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALH-FLLP 187

                         170
                  ....*....|..
gi 1573864740 222 VIVTALILVHLF 233
Cdd:MTH00016  188 FVIAALSMIHLL 199
CYTB MTH00145
cytochrome b; Provisional
 61-233 1.14e-21

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 92.28  E-value: 1.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  61 LGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYR 140
Cdd:MTH00145   34 FGSLLGLCLGIQILTGLFLSMHYTA----HVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYL 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 141 NPRelNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFIL 220
Cdd:MTH00145  110 MQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLH-FLL 186

                         170
                  ....*....|...
gi 1573864740 221 PVIVTALILVHLF 233
Cdd:MTH00145  187 PFVILGLSVLHLL 199
CYTB MTH00191
cytochrome b; Provisional
 67-233 2.17e-20

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 88.43  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  67 LAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRelN 146
Cdd:MTH00191   36 LCLIIQILTGLFLAMHYTA----DISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKE--T 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 147 WLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILPVIVTA 226
Cdd:MTH00191  110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFH-FLLPFLIAA 188


                  ....*..
gi 1573864740 227 LILVHLF 233
Cdd:MTH00191  189 LSLIHLL 195
CYTB MTH00034
cytochrome b; Validated
 67-233 5.88e-20

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 87.45  E-value: 5.88e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  67 LAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNprELN 146
Cdd:MTH00034   39 LCLIIQIITGIFLAMHYTA----DISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVN--IET 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 147 WLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILPVIVTA 226
Cdd:MTH00034  113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFH-FLFPFIIAA 191


                  ....*..
gi 1573864740 227 LILVHLF 233
Cdd:MTH00034  192 LSIIHLL 198
CYTB MTH00033
cytochrome b; Provisional
 52-243 7.22e-20

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 87.30  E-value: 7.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  52 IWYWYPLyclGGISFLAFVILVITGTILGLYYvpggEGDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMC 131
Cdd:MTH00033   24 ISYWWNF---GSLLCLCLGIQILTGVLLAMHY----RSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIG 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 132 RVYFTGAYRnpRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTR 211
Cdd:MTH00033   97 RGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1573864740 212 MYFLHvFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:MTH00033  175 FFSLH-YLLPFVLVGLVLAHLLTLHEKGSNEP 205
CYTB MTH00119
cytochrome b; Provisional
 67-232 1.76e-19

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 86.11  E-value: 1.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  67 LAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNprELN 146
Cdd:MTH00119   40 LCLITQILTGLFLAMHYTA----DISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY--KET 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 147 WLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILPVIVTA 226
Cdd:MTH00119  114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALH-FLLPFLIAG 192


                  ....*.
gi 1573864740 227 LILVHL 232
Cdd:MTH00119  193 LTLIHL 198
CYTB MTH00100
cytochrome b; Provisional
 70-232 2.40e-19

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 85.85  E-value: 2.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  70 VILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRelNWLI 149
Cdd:MTH00100   42 ILQILTGLFLAMHYTS----DTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLE--TWNI 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 150 GVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILPVIVTALIL 229
Cdd:MTH00100  116 GIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIITALAM 194


                  ...
gi 1573864740 230 VHL 232
Cdd:MTH00100  195 VHL 197
CYTB MTH00224
cytochrome b; Provisional
 52-243 5.08e-19

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 84.97  E-value: 5.08e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  52 IWYWYplyclGGISFLAFVILVITGTILGLYYVPGGEgdptPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMC 131
Cdd:MTH00224   30 IWWNY-----GSLLGLCLVIQVLTGLFLSMHYAPNIE----MAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVG 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 132 RVYFTGAYRNPRelNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTR 211
Cdd:MTH00224  101 RGLYYGSFNLSE--TWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNR 178

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1573864740 212 MYFLHvFILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:MTH00224  179 FFSFH-FLLPFAIMGATILHIMFLHQTGSNNP 209
CYTB MTH00053
cytochrome b; Provisional
 58-233 9.68e-19

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 83.99  E-value: 9.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  58 LYCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTG 137
Cdd:MTH00053   31 LWNFGSLLGFCLIIQIITGIFLAMHYCA----DVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYG 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 138 AYRnpRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHv 217
Cdd:MTH00053  107 SYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLH- 183

                         170
                  ....*....|....*.
gi 1573864740 218 FILPVIVTALILVHLF 233
Cdd:MTH00053  184 YLLPFILAGLALVHLI 199
CYTB MTH00022
cytochrome b; Validated
 58-243 6.29e-18

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 81.67  E-value: 6.29e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  58 LYCLGGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTG 137
Cdd:MTH00022   29 LWNFGSLLGLCLVIQIITGCFLSMHYCS----DVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYG 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 138 AYRnpRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHv 217
Cdd:MTH00022  105 GYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLH- 181

                         170       180
                  ....*....|....*....|....*.
gi 1573864740 218 FILPVIVTALILVHLFIVWVQGIAEP 243
Cdd:MTH00022  182 FLFPFILAFLVIVHLIYLHVDGSNNP 207
CYTB MTH00074
cytochrome b; Provisional
 67-232 1.11e-16

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 78.18  E-value: 1.11e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  67 LAFVILVITGTILGLYYVpggeGDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPRelN 146
Cdd:MTH00074   40 VCLIAQIITGLFLAMHYT----ADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKE--T 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 147 WLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILPVIVTA 226
Cdd:MTH00074  114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFH-FLLPFLIAG 192


                  ....*.
gi 1573864740 227 LILVHL 232
Cdd:MTH00074  193 ASIIHL 198
CYTB MTH00131
cytochrome b; Provisional
 62-232 1.74e-16

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 77.77  E-value: 1.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  62 GGISFLAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRN 141
Cdd:MTH00131   34 GSLLGLCLITQILTGLFLAMHYTS----DISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLY 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 142 PRelNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILP 221
Cdd:MTH00131  110 KE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFH-FLFP 186

                         170
                  ....*....|.
gi 1573864740 222 VIVTALILVHL 232
Cdd:MTH00131  187 FVIAAATILHL 197
CYTB MTH00156
cytochrome b; Provisional
 67-234 4.95e-16

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 75.97  E-value: 4.95e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  67 LAFVILVITGTILGLYYVPggegDPTPAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYRNPreLN 146
Cdd:MTH00156   29 LCLMIQIITGLFLAMHYTA----DIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLK--HT 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 147 WLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFILPVIVTA 226
Cdd:MTH00156  103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFH-FLLPFIILA 181


                  ....*...
gi 1573864740 227 LILVHLFI 234
Cdd:MTH00156  182 MVMIHLLF 189
CYTB MTH00086
cytochrome b; Provisional
 61-234 9.54e-15

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 72.28  E-value: 9.54e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  61 LGGISFLAFVILVITGTILGLYYVPGGEGdptpAYSSMEYIMVQLPFGYIMRSIHHWATHFMVASVFLHMCRVYFTGAYR 140
Cdd:MTH00086   22 FGSMLGMVLVFQILTGTFLAFYYTADSSM----AFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 141 npRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQTVTRMYFLHvFIL 220
Cdd:MTH00086   98 --LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLH-FLL 174

                         170
                  ....*....|....
gi 1573864740 221 PVIVTALILVHLFI 234
Cdd:MTH00086  175 PWGLLVLVLFHLIF 188
CYTB MTH00046
cytochrome b; Validated
 53-233 5.31e-13

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 67.32  E-value: 5.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740  53 WYWyplyCLGGISFLAFVILVITGTILGLYYVpggegdptpAYSSMEYIMVQLP-----FGYIMRSIHHWATHFMVASVF 127
Cdd:MTH00046   20 YYW----CSGFVLSVFMVIQVLTGVLLSLLYV---------ADSLCSFFCVMSLsndsfFTWCVRYWHIWGVNVLFILLF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1573864740 128 LHMCRVYFTGAYRnpRELNWLIGVALMFFTIFFGYSGYLLPWDSLAFGAATIGINMANSTPLIGSWVATAMFAGTSLSGQ 207
Cdd:MTH00046   87 IHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGV 164

                         170       180
                  ....*....|....*....|....*.
gi 1573864740 208 TVTRMYFLHVfILPVIVTALILVHLF 233
Cdd:MTH00046  165 TLVRVFSVHI-CLGFVILGLMVVHLF 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH