|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
1-513 |
0e+00 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 1100.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMPSEREHL 80
Cdd:PRK10820 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMPSEREHR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 81 ALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDSNPQNTLSEHVVINGQNFLME 160
Cdd:PRK10820 81 ALSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQDFLME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 161 ITPVYLKGEGNTRVLTGAVIMLRSTLRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGK 240
Cdd:PRK10820 161 ITPVYLQDENDQHVLVGAVVMLRSTARMGRQLQNLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 241 DLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313
Cdd:PRK10820 241 DLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPgaypnalEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQG 393
Cdd:PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 394 VPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQDILLPDYDAGtVSVGEEAMEGSLDDITSRFERSVL 473
Cdd:PRK10820 401 VPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAA-VAVGEDAMEGSLDEITSRFERSVL 479
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1017925082 474 TQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLNHKKGDE 513
Cdd:PRK10820 480 TRLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKGEE 519
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
1-507 |
0e+00 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 945.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMPSEREHL 80
Cdd:COG3283 1 MRLEVTCEDRLGITRELLDLLVERNIDLRGIEIDPSGRIYLNFPELDFEQFQHLMPEIRRIPGVTDVRTVPFMPSEREHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 81 ALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDSNPQNTLSEHVVINGQNFLME 160
Cdd:COG3283 81 ELDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLSELLKGFNFSRWLESNEPRPQSERVVINGQDYLAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 161 ITPVYLKGEGNTRVLTGAVIMLRSTLRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGK 240
Cdd:COG3283 161 ILPIYLPDEEGKSILAGAVVTLKSAARLGEQLQALQVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 241 DLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313
Cdd:COG3283 241 ELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPgafgnarEGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQG 393
Cdd:COG3283 321 FLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 394 VPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQDILLPDYDAGtVSVGEEAMEGSLDDITSRFERSVL 473
Cdd:COG3283 401 RPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLQLPEYAAS-AGLLDDLLEGSLDEIVKRFERSLL 479
|
490 500 510
....*....|....*....|....*....|....
gi 1017925082 474 TQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:COG3283 480 RRLYPSYPSTRKLAKRLGVSHTAIANKLREYGIG 513
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
206-365 |
2.94e-86 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 263.11 E-value: 2.94e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 206 IIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHekgaftg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYY 358
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 1017925082 359 RLNVLTL 365
Cdd:pfam00158 161 RLNVIPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
187-442 |
6.35e-84 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 269.66 E-value: 6.35e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 187 RMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASI 266
Cdd:TIGR01817 179 QLRDKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 267 PEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339
Cdd:TIGR01817 259 SETLLESELFGHekgaftgAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 340 QKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGvpRP-KLSADLGTVLMRYGWPGNIRQ 418
Cdd:TIGR01817 339 NRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG--RPlTITPSAIRVLMSCKWPGNVRE 416
|
250 260
....*....|....*....|....
gi 1017925082 419 LKNAVYRALTQLEGYELRPQDILL 442
Cdd:TIGR01817 417 LENCLERTATLSRSGTITRSDFSC 440
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
149-423 |
1.75e-82 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 267.14 E-value: 1.75e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 149 HVVINGQnflmeitPVYLKGEgntrvLTGAVimlrSTLRMGRQLQNLSSQ------------------DVGAFSQIIAVS 210
Cdd:NF041552 210 YVIISAV-------PIFINGE-----FIGVV----STDRDITEVKNLSKElekakekleyleeevkkiSEDSFGKIIGKS 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 211 PKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAkPYLALNCASIPEDAVESELFGHAP--------EG 282
Cdd:NF041552 274 KKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEgaftgalkKG 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNV 362
Cdd:NF041552 353 KIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNV 432
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017925082 363 LTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQLKNAV 423
Cdd:NF041552 433 VEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTI 493
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
203-506 |
1.34e-80 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 260.58 E-value: 1.34e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 203 FSQIIAVSPKMRHVVDQARKLA-SLTAPLLITGDTGTGKDLLAHAVHLASPRA---AKPYLALNCASIPEDAVESELFGH 278
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 279 -------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGI 351
Cdd:NF038308 258 vkgaftgAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 352 FREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKlSADLGT------VLMRYGWPGNIRQLKNAVYR 425
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRF-NKEARFrylafaTSPEALWPGNFRELSASVTR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 426 ALT------------QLEGYELRP--QDILLPDYDAGTVSVGEEAMEGSLDditsRFERSVLTQLY---RSYPSTRKLAK 488
Cdd:NF038308 417 MATladggriteelvEEEIARLRAawQSAPAAADDDALADLLGGEQLAELD----LFDRVQLAAVLrvcRQSRSLSAAGR 492
|
330 340
....*....|....*....|....
gi 1017925082 489 RL-GVSHTAIAN-----KLREYGL 506
Cdd:NF038308 493 RLfGVSRQQKASpndadRLRKYLA 516
|
|
| ACT_TyrR |
cd04877 |
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. ... |
1-74 |
3.32e-36 |
|
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence of cofactors or in the presence of phenylalanine alone, the TyrR protein exists as a dimer. However, in the presence of ATP and tyrosine the TyrR protein self-aggregates to form a hexamer. Members of this CD belong to the superfamily of ACT regulatory domains.
Pssm-ID: 153149 [Multi-domain] Cd Length: 74 Bit Score: 128.93 E-value: 3.32e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1017925082 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMP 74
Cdd:cd04877 1 MRLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPYMP 74
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
229-360 |
1.59e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 229 PLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAPEGKKGFF------------EQANGGSVL 296
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalaRKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1017925082 297 LDEIGEMSPRMQAKLLRFLNDgtfRRVGEDHEVHVDVRVICATQ--KNLVELVQKGIFREDLYYRL 360
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
1-513 |
0e+00 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 1100.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMPSEREHL 80
Cdd:PRK10820 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMPSEREHR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 81 ALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDSNPQNTLSEHVVINGQNFLME 160
Cdd:PRK10820 81 ALSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQDFLME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 161 ITPVYLKGEGNTRVLTGAVIMLRSTLRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGK 240
Cdd:PRK10820 161 ITPVYLQDENDQHVLVGAVVMLRSTARMGRQLQNLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 241 DLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313
Cdd:PRK10820 241 DLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPgaypnalEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQG 393
Cdd:PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 394 VPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQDILLPDYDAGtVSVGEEAMEGSLDDITSRFERSVL 473
Cdd:PRK10820 401 VPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAA-VAVGEDAMEGSLDEITSRFERSVL 479
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1017925082 474 TQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLNHKKGDE 513
Cdd:PRK10820 480 TRLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKGEE 519
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
1-507 |
0e+00 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 945.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMPSEREHL 80
Cdd:COG3283 1 MRLEVTCEDRLGITRELLDLLVERNIDLRGIEIDPSGRIYLNFPELDFEQFQHLMPEIRRIPGVTDVRTVPFMPSEREHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 81 ALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDSNPQNTLSEHVVINGQNFLME 160
Cdd:COG3283 81 ELDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLSELLKGFNFSRWLESNEPRPQSERVVINGQDYLAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 161 ITPVYLKGEGNTRVLTGAVIMLRSTLRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGK 240
Cdd:COG3283 161 ILPIYLPDEEGKSILAGAVVTLKSAARLGEQLQALQVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 241 DLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313
Cdd:COG3283 241 ELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPgafgnarEGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQG 393
Cdd:COG3283 321 FLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 394 VPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQDILLPDYDAGtVSVGEEAMEGSLDDITSRFERSVL 473
Cdd:COG3283 401 RPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLQLPEYAAS-AGLLDDLLEGSLDEIVKRFERSLL 479
|
490 500 510
....*....|....*....|....*....|....
gi 1017925082 474 TQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:COG3283 480 RRLYPSYPSTRKLAKRLGVSHTAIANKLREYGIG 513
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
82-507 |
1.26e-146 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 427.65 E-value: 1.26e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 82 LSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDSNpQNTLSEHVVINGQN--FLM 159
Cdd:COG3829 13 LEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIPNSPLLEVLKTG-KPVTGVIQKTGGKGktVIV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 160 EITPVYLKGEgntrvLTGAVIMLRS-------TLRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLI 232
Cdd:COG3829 92 TAIPIFEDGE-----VIGAVETFRDitelkrlERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 233 TGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMS 304
Cdd:COG3829 167 LGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKgaftgakkGGKPGLFELADGGTLFLDEIGEMP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 305 PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELF 384
Cdd:COG3829 247 LSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHF 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 385 VARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQDilLPDYDAGTVSVGEEAMEGSLDDI 464
Cdd:COG3829 327 LEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEH--LPEYLLEEAEAASAAEEGSLKEA 404
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1017925082 465 TSRFERSVLTQLYRSYPSTR-KLAKRLGVSHTAIANKLREYGLN 507
Cdd:COG3829 405 LEEVEKELIEEALEKTGGNKsKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
198-505 |
3.01e-108 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 328.46 E-value: 3.01e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 198 QDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFG 277
Cdd:COG2204 125 RENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 278 H-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG 350
Cdd:COG2204 205 HekgaftgAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEG 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 351 IFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPrPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQL 430
Cdd:COG2204 285 RFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKP-VKLSPEALEALLAYDWPGNVRELENVIERAVILA 363
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1017925082 431 EGYELRPQDIllpdydagtvsvgEEAMEgsldditsRFERS-VLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYG 505
Cdd:COG2204 364 DGEVITAEDL-------------PEALE--------EVERElIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
77-505 |
4.82e-105 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 327.24 E-value: 4.82e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 77 REHlALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPgfnfQRWldsnpqntlsEHVVINGQN 156
Cdd:COG3284 214 RLH-FLPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLEELFG----LDL----------EALPDGARR 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 157 FLMEITPVYLKGegntRVLTGAVIMLRSTLRMGRQlQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDT 236
Cdd:COG3284 279 APASPRPLRLRD----GRRLGALLRLRPARRAARA-APAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGET 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 237 GTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQ 308
Cdd:COG3284 354 GTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPgaftgarrKGRPGKIEQADGGTLFLDEIGDMPLALQ 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDcPRDIMPLTELFVARF 388
Cdd:COG3284 434 ARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRE-REDLPALIEHLLREL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 389 ADEQGVPRpkLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQDilLPDY---DAGTVSVGEEAMEGSLDDIt 465
Cdd:COG3284 513 AAGRGPLR--LSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVED--LPDElraELAAAAPAAAAPLTSLEEA- 587
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1017925082 466 srfERSVLTQLYRsypSTR----KLAKRLGVSHTAIANKLREYG 505
Cdd:COG3284 588 ---ERDAILRALR---ACGgnvsAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
206-365 |
2.94e-86 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 263.11 E-value: 2.94e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 206 IIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHekgaftg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYY 358
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 1017925082 359 RLNVLTL 365
Cdd:pfam00158 161 RLNVIPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
187-442 |
6.35e-84 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 269.66 E-value: 6.35e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 187 RMGRQLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASI 266
Cdd:TIGR01817 179 QLRDKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 267 PEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339
Cdd:TIGR01817 259 SETLLESELFGHekgaftgAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 340 QKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGvpRP-KLSADLGTVLMRYGWPGNIRQ 418
Cdd:TIGR01817 339 NRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG--RPlTITPSAIRVLMSCKWPGNVRE 416
|
250 260
....*....|....*....|....
gi 1017925082 419 LKNAVYRALTQLEGYELRPQDILL 442
Cdd:TIGR01817 417 LENCLERTATLSRSGTITRSDFSC 440
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
149-423 |
1.75e-82 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 267.14 E-value: 1.75e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 149 HVVINGQnflmeitPVYLKGEgntrvLTGAVimlrSTLRMGRQLQNLSSQ------------------DVGAFSQIIAVS 210
Cdd:NF041552 210 YVIISAV-------PIFINGE-----FIGVV----STDRDITEVKNLSKElekakekleyleeevkkiSEDSFGKIIGKS 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 211 PKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAkPYLALNCASIPEDAVESELFGHAP--------EG 282
Cdd:NF041552 274 KKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEgaftgalkKG 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNV 362
Cdd:NF041552 353 KIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNV 432
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1017925082 363 LTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQLKNAV 423
Cdd:NF041552 433 VEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTI 493
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
203-506 |
1.34e-80 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 260.58 E-value: 1.34e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 203 FSQIIAVSPKMRHVVDQARKLA-SLTAPLLITGDTGTGKDLLAHAVHLASPRA---AKPYLALNCASIPEDAVESELFGH 278
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 279 -------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGI 351
Cdd:NF038308 258 vkgaftgAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 352 FREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKlSADLGT------VLMRYGWPGNIRQLKNAVYR 425
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRF-NKEARFrylafaTSPEALWPGNFRELSASVTR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 426 ALT------------QLEGYELRP--QDILLPDYDAGTVSVGEEAMEGSLDditsRFERSVLTQLY---RSYPSTRKLAK 488
Cdd:NF038308 417 MATladggriteelvEEEIARLRAawQSAPAAADDDALADLLGGEQLAELD----LFDRVQLAAVLrvcRQSRSLSAAGR 492
|
330 340
....*....|....*....|....
gi 1017925082 489 RL-GVSHTAIAN-----KLREYGL 506
Cdd:NF038308 493 RLfGVSRQQKASpndadRLRKYLA 516
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
173-507 |
1.29e-79 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 255.93 E-value: 1.29e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 173 RVLTGAVIMLRSTLRMGRQLQNLSSQDVGAfSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASP 252
Cdd:PRK11361 113 NLIVQRALQLQSMKKEIRHLHQALSTSWQW-GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 253 RAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE 325
Cdd:PRK11361 192 RAKGPFIKVNCAALPESLLESELFGHekgaftgAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGG 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 326 DHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGT 405
Cdd:PRK11361 272 HQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMS 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 406 VLMRYGWPGNIRQLKNAVYRALTQLEGY----ELRPQDILLPDYDAGTVSVGEEAmEGSLDDITSRFERSVLTQ-LYRSY 480
Cdd:PRK11361 352 LLTAWSWPGNIRELSNVIERAVVMNSGPiifsEDLPPQIRQPVCNAGEVKTAPVG-ERNLKEEIKRVEKRIIMEvLEQQE 430
|
330 340
....*....|....*....|....*..
gi 1017925082 481 PSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:PRK11361 431 GNRTRTALMLGISRRALMYKLQEYGID 457
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
182-494 |
9.83e-79 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 255.10 E-value: 9.83e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 182 LRSTLRMgRQL--QNLSSQDVGAF--------SQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLAS 251
Cdd:PRK05022 156 LRNALLI-EQLesQAELPQDVAEFlrqealkeGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 252 PRAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324
Cdd:PRK05022 235 PRADKPLVYLNCAALPESLAESELFGHvkgaftgAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVG 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 325 EDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLG 404
Cdd:PRK05022 315 SDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 405 TVLMRYGWPGNIRQLKNAVYR----ALTQLEGYE--LRPQDILLPDYDA----GTVSVGEEAMEGSLDDITSRFERSVLT 474
Cdd:PRK05022 395 AALLAYDWPGNVRELEHVISRaallARARGAGRIvtLEAQHLDLPAEVAlpppEAAAAPAAVVSQNLREATEAFQRQLIR 474
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1017925082 475 Q----------------------LYRsypstrkLAKRLGVSH 494
Cdd:PRK05022 475 QalaqhqgnwaaaaraleldranLHR-------LAKRLGLKD 509
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
190-506 |
1.20e-76 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 247.74 E-value: 1.20e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 190 RQLQnlSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPED 269
Cdd:TIGR02915 127 RRLQ--SALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 270 AVESELFGHapegKKGFF-----------EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338
Cdd:TIGR02915 205 LLESELFGY----EKGAFtgavkqtlgkiEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 339 TQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQ 418
Cdd:TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 419 LKNAVYRALTQLEGYELRPQDILLPDydagtVSVGEEAMEGSLDDITSRFERSVLTQLY-RSYPSTRKLAKRLGVSHTAI 497
Cdd:TIGR02915 361 LENKVKRAVIMAEGNQITAEDLGLDA-----RERAETPLEVNLREVRERAEREAVRKAIaRVDGNIARAAELLGITRPTL 435
|
....*....
gi 1017925082 498 ANKLREYGL 506
Cdd:TIGR02915 436 YDLMKKHGI 444
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
191-506 |
6.92e-75 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 244.01 E-value: 6.92e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 191 QLQNLSSQDVGAFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDA 270
Cdd:PRK10923 125 QQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 271 VESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343
Cdd:PRK10923 205 IESELFGHekgaftgANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 344 VELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQLKNaV 423
Cdd:PRK10923 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN-T 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 424 YRALTQL-EGYELRPQDI---------------LLPDYDAGTVS-----VGEEAMEGSLDDITSRFERSVLTQLYRSYPS 482
Cdd:PRK10923 364 CRWLTVMaAGQEVLIQDLpgelfestvpestsqMQPDSWATLLAqwadrALRSGHQNLLSEAQPELERTLLTTALRHTQG 443
|
330 340
....*....|....*....|....*
gi 1017925082 483 TRKLAKR-LGVSHTAIANKLREYGL 506
Cdd:PRK10923 444 HKQEAARlLGWGRNTLTRKLKELGM 468
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
206-504 |
5.11e-69 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 224.10 E-value: 5.11e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 206 IIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHeagaftg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYY 358
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 359 RLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPR-PKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRP 437
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 438 QDILL---------------------PDYDAGTVSVGEEAMEGSLDDITSRFERSVLTQ-LYRSYPSTRKLAKRLGVSHT 495
Cdd:TIGR02974 241 DEIIIdpfaspwrpkqaapavdevnsTPTDLPSPSSIAAAFPLDLKQAQQDYEIELLQQaLAEAQFNQRKAAELLGLTYH 320
|
....*....
gi 1017925082 496 AIANKLREY 504
Cdd:TIGR02974 321 QLRGLLRKH 329
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
206-501 |
4.50e-66 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 220.29 E-value: 4.50e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 206 IIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHekgaftg 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYY 358
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 359 RLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQ 438
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISER 380
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1017925082 439 DilLPDYDAGTVSVGEEAMEgsLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKL 501
Cdd:PRK10365 381 E--LPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
205-428 |
4.11e-62 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 209.69 E-value: 4.11e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 205 QIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP---- 280
Cdd:PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARgaft 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 281 ---EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLY 357
Cdd:PRK15115 215 gavSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLY 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1017925082 358 YRLNVLTLNIPPLRDCPRDImPLTELFVARFADEQGVPRPK-LSADLGTVLMRYGWPGNIRQLKNAVYR--ALT 428
Cdd:PRK15115 295 YRLNVVSLKIPALAERTEDI-PLLANHLLRQAAERHKPFVRaFSTDAMKRLMTASWPGNVRQLVNVIEQcvALT 367
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
206-501 |
1.44e-61 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 210.49 E-value: 1.44e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 206 IIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAPE---- 281
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGaftg 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 282 ----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLY 357
Cdd:TIGR02329 294 arrgGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 358 YRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVP----RPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGy 433
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPdseaAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSA- 452
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1017925082 434 elRPQDILLPDY-DAGTVSVGEEAMEGSLDDITSRfERSVLTQLyrsypSTRKLAKRLGVSHTAIANKL 501
Cdd:TIGR02329 453 --MPAGALTPDVlRALAPELAEASGKGKTSALSLR-ERSRVEAL-----AVRAALERFGGDRDAAAKAL 513
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
194-507 |
4.29e-61 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 203.93 E-value: 4.29e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 194 NLSSQDVGAFSQIIavspkmrhvVDQARKLASLTApLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVES 273
Cdd:COG3604 92 TLDSRRPGAFSEED---------LRLLETLASLAA-VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 274 elfghapegkkgffeqanggsvlldeigemsprmqakllrfLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFR 353
Cdd:COG3604 162 -----------------------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFR 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 354 EDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGY 433
Cdd:COG3604 201 EDLYYRLNVFPIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGG 280
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1017925082 434 ELRPQDIllpdydagtVSVGEEAMEgsldditsRFERSVLTQ-LYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:COG3604 281 VLDADDL---------APGSREALE--------EVEREHILEaLERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
183-503 |
3.35e-58 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 201.87 E-value: 3.35e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 183 RSTLRMGRQLQNLSSQdvgafsqiiavSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASP--------RA 254
Cdd:PRK15424 209 RNALRTRYVLGDLLGQ-----------SPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFarhdarqgKK 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 255 AKPYLALNCASIPEDAVESELFGHAPE--------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGED 326
Cdd:PRK15424 278 SHPFVAVNCGAIAESLLEAELFGYEEGaftgsrrgGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 327 HEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVP-RPKLSADLGT 405
Cdd:PRK15424 358 QPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPfSAALRQGLQQ 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 406 ---VLMRYGWPGNIRQLKNAVYRALTQLEGyelRPQDILLPDYdagTVSVGEEAMEGSLDDITSRFERSVLTQLYRSYPS 482
Cdd:PRK15424 438 cetLLLHYDWPGNVRELRNLMERLALFLSV---EPTPDLTPQF---LQLLLPELARESAKTPAPRLLAATLQQALERFNG 511
|
330 340
....*....|....*....|..
gi 1017925082 483 TRKLAKR-LGVSHTAIANKLRE 503
Cdd:PRK15424 512 DKTAAANyLGISRTTLWRRLKA 533
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
53-506 |
1.62e-56 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 199.13 E-value: 1.62e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 53 SLMAEIRRiagvtdvrtipwmpsereHL-ALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLI-- 129
Cdd:PRK11388 193 SLLAESNR------------------HLnQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITELLtl 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 130 PGfNFQRWLDSnpQNTLSeHVVI----NGQ--NFLMEITPVyLKGEGNTRVLtgaviMLRSTLRMgRQL-QNLSSQDVGA 202
Cdd:PRK11388 255 PA-VLQQAIKQ--AHPLK-HVEVtfesQGQfiDAVITLKPI-IEGQGTSFIL-----LLHPVEQM-RQLmTSQLGKVSHT 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 203 FSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAP-- 280
Cdd:PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRtd 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 281 --EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYY 358
Cdd:PRK11388 404 seNGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 359 RLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVpRPKLSADLGTVLMRYGWPGNIRQLKNAVYRALTQLEGYELRPQ 438
Cdd:PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFST-RLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLS 562
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 439 DilLPDYDAGTVSVGEEAMEGSLDDIT-SRFERSVLTQLYR-SYPSTRKLAKRLGVSHTAIANKLREYGL 506
Cdd:PRK11388 563 D--LPEHLFTEQATDDVSATRLSTSLSlAELEKEAIINAAQvCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
216-427 |
3.07e-56 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 190.65 E-value: 3.07e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 216 VVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFE 288
Cdd:PRK11608 18 VLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHeagaftgAQKRHPGRFE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIP 368
Cdd:PRK11608 98 RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLP 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 369 PLRDCPRDIMPLTELFVARFADEQGVPR-PKLSADLGTVLMRYGWPGNIRQLKNAVYRAL 427
Cdd:PRK11608 178 PLRERQSDIMLMAEHFAIQMCRELGLPLfPGFTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
186-507 |
1.35e-53 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 191.97 E-value: 1.35e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 186 LRMGRQLQNLSSQdvgaFSQIIAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCAS 265
Cdd:PRK15429 362 LALTEQLNNVDSE----FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 266 IPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338
Cdd:PRK15429 438 MPAGLLESDLFGHergaftgASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 339 TQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRDCPRDIMPLTELFVARFADEQGVPRPKLSADLGTVLMRYGWPGNIRQ 418
Cdd:PRK15429 518 TNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRE 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 419 LKNAVYRA--LTQLEGYELRPQDILLPDYDAGTVSVgEEAMEGslDDITSRFERsVLTQLYRSYPSTRKLAKRLGVSHTA 496
Cdd:PRK15429 598 LENVIERAvlLTRGNVLQLSLPDITLPEPETPPAAT-VVAQEG--EDEYQLIVR-VLKETNGVVAGPKGAAQRLGLKRTT 673
|
330
....*....|.
gi 1017925082 497 IANKLREYGLN 507
Cdd:PRK15429 674 LLSRMKRLGID 684
|
|
| ACT_TyrR |
cd04877 |
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. ... |
1-74 |
3.32e-36 |
|
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence of cofactors or in the presence of phenylalanine alone, the TyrR protein exists as a dimer. However, in the presence of ATP and tyrosine the TyrR protein self-aggregates to form a hexamer. Members of this CD belong to the superfamily of ACT regulatory domains.
Pssm-ID: 153149 [Multi-domain] Cd Length: 74 Bit Score: 128.93 E-value: 3.32e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1017925082 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMP 74
Cdd:cd04877 1 MRLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPYMP 74
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
227-432 |
9.96e-33 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 131.11 E-value: 9.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 227 TAPLLITGDTGTGKDLLA-------HAVHLASpraaKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANG 292
Cdd:COG4650 208 RAPILLTGPTGAGKSQLArriyelkKARHQVS----GRFVEVNCATLRGDGAMSALFGHvkgaftgAVSDRAGLLRSADG 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 293 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLNIPPLRD 372
Cdd:COG4650 284 GVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAE 363
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1017925082 373 CPRDIMPLTELFVARFADEQGVpRPKLSADLGTVLMRYG------WPGNIRQLKNAVYRALTQLEG 432
Cdd:COG4650 364 RREDIEPNLDYELARFAREQGR-RVRFNKEARARYLAFAtspealWSGNFRDLNASVTRMATLAEG 428
|
|
| HTH_TypR |
TIGR04381 |
TyrR family helix-turn-helix domain; This model describes the C-terminal DNA-binding ... |
460-507 |
3.13e-26 |
|
TyrR family helix-turn-helix domain; This model describes the C-terminal DNA-binding helix-turn-helix domain of several regulators of aromatic amino acid metabolism. Examples include TyrR in Escherichia coli and PhhR in Pseudomonas putida. Most members of this family have a sigma-54 interaction domain. [Regulatory functions, DNA interactions]
Pssm-ID: 275174 [Multi-domain] Cd Length: 49 Bit Score: 100.51 E-value: 3.13e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1017925082 460 SLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:TIGR04381 1 SLDEIMKRFEASLLRRLYASYPSTRQLAKRLGVSHTAIANKLREYGIG 48
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
211-369 |
1.24e-25 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 102.61 E-value: 1.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 211 PKMRHVVDQARKLASLT--APLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGH-APEGKKGFF 287
Cdd:cd00009 1 VGQEEAIEALREALELPppKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHfLVRLLFELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRvgedhEVHVDVRVICATQKNLvelvqKGIFREDLYYRLNvLTLNI 367
Cdd:cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPL-----LGDLDRALYDRLD-IRIVI 149
|
..
gi 1017925082 368 PP 369
Cdd:cd00009 150 PL 151
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
191-423 |
1.47e-23 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 104.80 E-value: 1.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 191 QLQNLSSQDVgaFSQIIAVSPKMRHVVDQArKLASLTAP----LLITGDTGTGKDLLAHAVH---LASPRAAK--PYLAL 261
Cdd:COG1221 93 KENNEEEEDP--FDNLIGANGSLKNAIEQA-KAAILYPPkglhTLILGPTGVGKSFFAELMYeyaIEIGVLPEdaPFVVF 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 262 NCA---SIPEdAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE-DHEVH 330
Cdd:COG1221 170 NCAdyaNNPQ-LLMSQLFGYvkgaftgADKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGEtEKTRK 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 331 VDVRVICATQKNLVELVQKGIFRedlyyRLNVlTLNIPPLRDCPRD-IMPLTELFvarFADE-QGVPRP-KLSADLGTVL 407
Cdd:COG1221 249 ANVRIIFATTEDPESSLLKTFLR-----RIPM-VIKLPSLEERSLEeRLELIKHF---FKEEaKRLNKPiKVSKEVLKAL 319
|
250
....*....|....*.
gi 1017925082 408 MRYGWPGNIRQLKNAV 423
Cdd:COG1221 320 LLYDCPGNIGQLKSDI 335
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
207-370 |
1.43e-17 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 79.31 E-value: 1.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 207 IAVSPKMRHVVDQARKLASLTAPLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDaveselfghapegkkgF 286
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLE----------------L 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLndgtfrRVGEDHevhvDVRVICATQKNLVELVQKGIFREDLYYRLNVLTLN 366
Cdd:pfam14532 65 LEQAKGGTLYLKDIADLSKALQKGLLLLL------AKAEGY----RVRLVCTSSKDLPQLAAAGLFDEQLYFELSALRLH 134
|
....
gi 1017925082 367 IPPL 370
Cdd:pfam14532 135 VPPL 138
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
458-507 |
3.95e-15 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 69.37 E-value: 3.95e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1017925082 458 EGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:pfam18024 1 EMSLKEYVSYIERELIGAAYENYKSARKVAKALGLSHTTIANKMKRYGIS 50
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
229-360 |
1.59e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 229 PLLITGDTGTGKDLLAHAVHLASPRAAKPYLALNCASIPEDAVESELFGHAPEGKKGFF------------EQANGGSVL 296
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalaRKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1017925082 297 LDEIGEMSPRMQAKLLRFLNDgtfRRVGEDHEVHVDVRVICATQ--KNLVELVQKGIFREDLYYRL 360
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
76-193 |
3.20e-07 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 52.54 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 76 EREHLALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFN-----FQRWLDSNPQNTLSE-- 148
Cdd:COG3852 3 RESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSplrelLERALAEGQPVTEREvt 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1017925082 149 HVVINGQNFLMEITPVYLKGEGNTrvlTGAVIMLR---STLRMGRQLQ 193
Cdd:COG3852 83 LRRKDGEERPVDVSVSPLRDAEGE---GGVLLVLRditERKRLERELR 127
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
82-140 |
2.29e-06 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 45.08 E-value: 2.29e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1017925082 82 LSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDS 140
Cdd:smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEA 61
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
230-339 |
3.67e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 37.57 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 230 LLITGDTGTGKDLLAHAVhlASpRAAKPYLALNCASIpedavESELFGHAPEGKKGFFEQANGGS---VLLDEI------ 300
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAV--AK-ELGAPFIEISGSEL-----VSKYVGESEKRLRELFEAAKKLApcvIFIDEIdalags 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1017925082 301 -----GEMSPRMQAKLLRFLNDGTFRrvgedhevHVDVRVICAT 339
Cdd:pfam00004 73 rgsggDSESRRVVNQLLTELDGFTSS--------NSKVIVIAAT 108
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
76-168 |
3.78e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 39.56 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 76 EREHLALSALLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLDSNPQNTLSEHVVIN-- 153
Cdd:COG5000 86 EERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLPELDLAELLREALERGWQEEIELTrd 165
|
90
....*....|....*.
gi 1017925082 154 -GQNFLMEITPVYLKG 168
Cdd:COG5000 166 gRRTLLVRASPLRDDG 181
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
89-139 |
4.55e-03 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 36.84 E-value: 4.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1017925082 89 MPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNFQRWLD 139
Cdd:cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRE 51
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
229-372 |
7.06e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 36.89 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 229 PLLITGDTGTGKDLLA-HAVHLASPRaakPYLALNCasiPEDAVESELFGH-APEGKKGFFEQA-------NGGSVLLDE 299
Cdd:pfam07728 1 GVLLVGPPGTGKTELAeRLAAALSNR---PVFYVQL---TRDTTEEDLFGRrNIDPGGASWVDGplvraarEGEIAVLDE 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1017925082 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV---DVRVICATqknlvelvqkgifrEDLYYRLNVLTlniPPLRD 372
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATM--------------NPLDRGLNELS---PALRS 133
|
|
| glnL |
PRK11073 |
nitrogen regulation protein NR(II); |
85-162 |
9.79e-03 |
|
nitrogen regulation protein NR(II);
Pssm-ID: 182947 [Multi-domain] Cd Length: 348 Bit Score: 38.14 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017925082 85 LLEAMPEPFLSLDLKSKVERVNHASCQLFAQSQEKLSNHNAAQLIPGFNF-----QRWLDSNPQNTLSE-HVVINGQNFL 158
Cdd:PRK11073 12 ILNSLINSILLLDDDLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLnielmRESLQAGQGFTDNEvTLVIDGRSHI 91
|
....
gi 1017925082 159 MEIT 162
Cdd:PRK11073 92 LSLT 95
|
|
| |
