|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
5-463 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 679.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 5 REDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDEVYKQFIDETGA 84
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 85 QEASKDEAKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGL-FGPKALIEMYPQIADISNIINVIA 163
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMsFGGQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 164 STAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQY----DLAKGNIPTWNLFG-LEIKQLNYQGQVLPVLIAA 238
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYlygqALAEGNIPVWDLFGfFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 239 YVLAKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITG 318
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVITG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 319 LHHMFLAVDFQLMGsSLGGTYLWPIVAISNICQGSAAFGAWFVYKRrkmVKEEGLALTSCISGMLGVTEPAMFGVNLPLK 398
Cdd:TIGR01992 321 LHHMFLAVDLQLIG-SLGGTFLWPMIALSNIAQGSAALGIIFMSRN---EKEKGLSLTSAISAYLGVTEPAMFGVNLKYK 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1029844838 399 YPFIAAISTSCVLGAIVGMNNVLGKVGVG-GVPAFISIQKEFWPVYLIVTAIAIVVPCILTIVMSH 463
Cdd:TIGR01992 397 FPFIAAMIGSGLAGLLSGLNGVLANSIGVgGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
3-461 |
2.80e-129 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 383.27 E-value: 2.80e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 3 VKREDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPgTVDEVYKQFIDET 82
Cdd:PRK11007 5 INQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKALIATT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 83 GAQEASKDEAKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKALIEMYPQIADISNIINVI 162
Cdd:PRK11007 84 GQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFLWLI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 163 ASTAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGNIPTWNlFGL-EIKQLNYQGQVLPVLIAAYVL 241
Cdd:PRK11007 164 GEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWD-FGLfSIEKVGYQAQVIPALLAGLAL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 242 AKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHA-GWLGGAIYGLLYAPLVITGLH 320
Cdd:PRK11007 243 GFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSfAPIGAALFGFLYAPLVITGVH 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 321 HMFLAVDFQLMgSSLGGTYLWPIVAISNICQGSAAFGAWFVYKRRkmvKEEGLALTSCISGMLGVTEPAMFGVNLPLKYP 400
Cdd:PRK11007 323 QTTLAIDLQMI-QSMGGTPVWPLIALSNIAQASAVVGIIIISRKH---NEREISVPAAISAYLGVTEPAMYGINLKYRFP 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1029844838 401 FIAAISTSCVLGAIVGMNNVLGKVG-VGGVPAFISIQKEFWPVYLIVTAIAIVVPCILTIVM 461
Cdd:PRK11007 399 MLCAMIGSALAGLICGLNGVMANGIgVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFI 460
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-461 |
1.56e-99 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 306.48 E-value: 1.56e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 96 AAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKaliemyPQIADISNIINVIASTAFIFLPALIG 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEG------SFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 176 WSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGnipTWNLFGLEiKQLNYQGQVLPVLIAAYVLAKIEKGLNKVVHDS 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVAGG---YISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 256 IKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVDFQLMGsSL 335
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLG-GT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 336 GGTYLWPIVAISNICQGSAAFGAWFVYKRRKMVKeeGLALTSCISGML-GVTEPAMFGVNLPLKYPFIAAISTSCVLGAI 414
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKPNKKVK--GLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAI 307
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1029844838 415 VGMNNVLGKVGVGG----VPAFISIQKEFWPVYLIVTAIAIVVPCILTIVM 461
Cdd:COG1263 308 AGLLGVKAFSFGVGglidFPSILNPGATNLLLYLIGLVIAFVYYFVFTFLI 358
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
111-402 |
6.56e-35 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 132.47 E-value: 6.56e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 111 GDIFIPILPAIVTAGLLMGINNLLTMKGLFgpkaLIEMYPQIADISNIINVIASTAFIFLPALIGWS-SMRVFGGSPILG 189
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGL----PAGGFTGDSPLAEILKQAGSAAFGILPILFAIGiAYGLAGGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 190 IVLGLILMHPQLVSQYD---LAKGNIPTWNLFGLEIKQLNYQGQVLPVLIAAYVLAKIEKGLNKVVHDSIKMLVVGPVAL 266
Cdd:pfam02378 77 AAGLIGLLSFNLAAAISvalTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 267 LVTGFLAFIIIGPVALLIGTGITSGVT----FIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVDFQLMGSSL----GGT 338
Cdd:pfam02378 157 IITGFVTLLVIGPVLGLIWPAIQGGLNalglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGSnpiaNQQ 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1029844838 339 YLWP----------IVAISNICQGSAAFGAWFVYKRRKMVKEEGLAltSCISGMLGVTEPAMFGVNLPLKYPFI 402
Cdd:pfam02378 237 AYGAgaahiltggfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSA--ALTPFLFGITEPLEFGFPFVLNPPFF 308
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
6-83 |
3.38e-30 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 112.24 E-value: 3.38e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1029844838 6 EDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDeVYKQFIDETG 83
Cdd:cd00212 2 QLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVAD-VYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
5-463 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 679.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 5 REDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDEVYKQFIDETGA 84
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 85 QEASKDEAKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGL-FGPKALIEMYPQIADISNIINVIA 163
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMsFGGQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 164 STAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQY----DLAKGNIPTWNLFG-LEIKQLNYQGQVLPVLIAA 238
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYlygqALAEGNIPVWDLFGfFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 239 YVLAKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITG 318
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVITG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 319 LHHMFLAVDFQLMGsSLGGTYLWPIVAISNICQGSAAFGAWFVYKRrkmVKEEGLALTSCISGMLGVTEPAMFGVNLPLK 398
Cdd:TIGR01992 321 LHHMFLAVDLQLIG-SLGGTFLWPMIALSNIAQGSAALGIIFMSRN---EKEKGLSLTSAISAYLGVTEPAMFGVNLKYK 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1029844838 399 YPFIAAISTSCVLGAIVGMNNVLGKVGVG-GVPAFISIQKEFWPVYLIVTAIAIVVPCILTIVMSH 463
Cdd:TIGR01992 397 FPFIAAMIGSGLAGLLSGLNGVLANSIGVgGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
5-460 |
9.43e-167 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 477.95 E-value: 9.43e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 5 REDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDEVYKQFIDETGA 84
Cdd:TIGR01996 3 QQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTGVVNKVYDEIVKLTGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 85 QEASKDEAKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKaLIEMYPQIADISNIINVIAS 164
Cdd:TIGR01996 83 SESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLFGLS-GVSVAPIPEGLAEMINVFTS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 165 TAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKG--NIPTWNLFGLEIKQLNYQGQVLPVLIAAYVLA 242
Cdd:TIGR01996 162 TAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGtaTGKAWNIFGLHIPVVGYQGTVLPVLVAVWILA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 243 KIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHM 322
Cdd:TIGR01996 242 KIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVITGIHHS 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 323 FLAVDFQLMGS-SLGGTYLWPIVAISNICQGSAAFGAWFVYKRRKMvkeEGLALTSCISGMLGVTEPAMFGVNLPLKYPF 401
Cdd:TIGR01996 322 FHAIETQLLANtKTGGNFLFPIASMANVAQGGAALAVFFKTKDKKL---KGLAIPSGLSALLGITEPAIFGVNLRYRKPF 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1029844838 402 IAAISTSCVLGAIVGMNNVLGKVG-VGGVPAFISIQ--KEFWPVYLIVTAIAIVVPCILTIV 460
Cdd:TIGR01996 399 IAALIGGAIGGAYVVLFHVAATAYgLTGIPGFLSILpsGINLLHYIVGMLIAFAVAFIATLL 460
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
3-461 |
2.80e-129 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 383.27 E-value: 2.80e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 3 VKREDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPgTVDEVYKQFIDET 82
Cdd:PRK11007 5 INQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKALIATT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 83 GAQEASKDEAKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKALIEMYPQIADISNIINVI 162
Cdd:PRK11007 84 GQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFLWLI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 163 ASTAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGNIPTWNlFGL-EIKQLNYQGQVLPVLIAAYVL 241
Cdd:PRK11007 164 GEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWD-FGLfSIEKVGYQAQVIPALLAGLAL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 242 AKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHA-GWLGGAIYGLLYAPLVITGLH 320
Cdd:PRK11007 243 GFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSfAPIGAALFGFLYAPLVITGVH 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 321 HMFLAVDFQLMgSSLGGTYLWPIVAISNICQGSAAFGAWFVYKRRkmvKEEGLALTSCISGMLGVTEPAMFGVNLPLKYP 400
Cdd:PRK11007 323 QTTLAIDLQMI-QSMGGTPVWPLIALSNIAQASAVVGIIIISRKH---NEREISVPAAISAYLGVTEPAMYGINLKYRFP 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1029844838 401 FIAAISTSCVLGAIVGMNNVLGKVG-VGGVPAFISIQKEFWPVYLIVTAIAIVVPCILTIVM 461
Cdd:PRK11007 399 MLCAMIGSALAGLICGLNGVMANGIgVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFI 460
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-461 |
1.56e-99 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 306.48 E-value: 1.56e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 96 AAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKaliemyPQIADISNIINVIASTAFIFLPALIG 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEG------SFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 176 WSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGnipTWNLFGLEiKQLNYQGQVLPVLIAAYVLAKIEKGLNKVVHDS 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVAGG---YISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 256 IKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVDFQLMGsSL 335
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLG-GT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 336 GGTYLWPIVAISNICQGSAAFGAWFVYKRRKMVKeeGLALTSCISGML-GVTEPAMFGVNLPLKYPFIAAISTSCVLGAI 414
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKPNKKVK--GLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAI 307
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1029844838 415 VGMNNVLGKVGVGG----VPAFISIQKEFWPVYLIVTAIAIVVPCILTIVM 461
Cdd:COG1263 308 AGLLGVKAFSFGVGglidFPSILNPGATNLLLYLIGLVIAFVYYFVFTFLI 358
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
8-471 |
9.41e-97 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 303.89 E-value: 9.41e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 8 VKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGpGTVDEVYKQFIDETGAQEA 87
Cdd:TIGR01995 5 AKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIG-NDVNDVYQALMDVLGLDDQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 88 SKDEAKQAaakKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLFGPKaliemypqiADISNIINVIASTAF 167
Cdd:TIGR01995 84 AEDDDSKG---KKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISAD---------SQTYQILNAMGDAVF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 168 IFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGNiptwNLFGLEIKQLNYQGQVLPVLIAAYVLAKIEKG 247
Cdd:TIGR01995 152 YFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGKPV----TFFGIPVTLMSYSSSVIPVILAVWLMSYVEKF 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 248 LNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVD 327
Cdd:TIGR01995 228 LKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIV 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 328 FQLMGSSLGGTYLWPIVAISNICQGSAAFGAWFvykRRKMVKEEGLALTSCISGMLGVTEPAMFGVNLPLKYPFIAAIST 407
Cdd:TIGR01995 308 INNIATQGFDPLILPASLAANFAQGGAALAVML---RTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIG 384
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1029844838 408 SCVLGAIVGMNNVLGKVGVG----GVPAFISiqkEFWPVYLIVTAIAIVVPCILTIVMSHFSKQKAKE 471
Cdd:TIGR01995 385 GAVGGAIIGIGSVKAFTAFApgllGLPMFIN---PSDGANFISALIAIVISFVVSFVLTYFIGFKDQE 449
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
163-419 |
6.59e-62 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 203.32 E-value: 6.59e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 163 ASTAFIFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAkgnIPTW-NLFGLEIKQLNYQGQVLPVLIAAYVL 241
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVG---AQAVgNFFGFEIAKVGYTGVVGPIIVGAIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 242 AKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIG-TGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLH 320
Cdd:TIGR00852 78 ALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPpVGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLH 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 321 HMFLAVDFQLMGS--SLGGTYLWPIVAISNICQGSAAFGAWFVykrRKMVKEEGLALTSCISGMLGVTEPAMFGVNLPLK 398
Cdd:TIGR00852 158 HIFYAIFIQLIAGgtVIGGGQVIPGDALANMAQGGAALAVFFT---AGDAKFKSIGLPAAFSAGLGITEPAMYGVALRER 234
|
250 260
....*....|....*....|.
gi 1029844838 399 YPFIAAISTSCVLGAIVGMNN 419
Cdd:TIGR00852 235 RPFVAGLIGSALLTAFLTGIT 255
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
11-416 |
6.55e-59 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 204.56 E-value: 6.55e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 11 IVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGpGTVDEVYKQFIDETGAQEASkd 90
Cdd:PRK09824 10 IVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIG-NHVADVFLAVNSVAGLGEKA-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 91 EAKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLTMKGLfgpkalieMYPQIAdiSNIINVIASTA-FIF 169
Cdd:PRK09824 87 QQAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGW--------TTEQSG--TYKILFAASDAlFFF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 170 LPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYD-LAKGNIPTWNLFGLEIKQLNYQGQVLPVLIAAYVLAKIEKGL 248
Cdd:PRK09824 157 FPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEaGQKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 249 NKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVDF 328
Cdd:PRK09824 237 NAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLMI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 329 QLMgSSLGGTYLWPIVAISNICQGSAAFGawfVYKRRKMVKEEGLALTSCISGMLGVTEPAMFGVNLPLKYPFIAAISTS 408
Cdd:PRK09824 317 NNL-TVLGHDTMLPLLMPAVMAQVGAALG---VFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISG 392
|
....*...
gi 1029844838 409 CVLGAIVG 416
Cdd:PRK09824 393 ALGAAIIG 400
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
8-416 |
2.17e-50 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 178.33 E-value: 2.17e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 8 VKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPG---TVDEVYKQFIDETGA 84
Cdd:PRK09586 9 LNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGkaqRAAKAMNELLGEAAA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 85 QEASKDE-----AKQAAAKKGNPVQRLIKLLGDIFIPILPAIVTAGLLMGINNLLtmkglfGPKALIEMYPQ--IADISN 157
Cdd:PRK09586 89 PVQDLAEiaaqnKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLI------EQVMHVPADAQgtLPDALN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 158 IINVIASTAFIFLPALIGWSSMRVFGGSPILG-IVLGLILM--HPQLVSQYDLAKGniptwNLFGLEIkqlNYQGQVLPV 234
Cdd:PRK09586 163 YMKVFSKGLFTFLSILIGYNAQQAFGGTGVNGaIIASLFLLgyNPAATTGYYAGFH-----DFFGLPI---DPRGNIIGV 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 235 LIAAYVLAKIEKGLNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPvallIGTGITSGVTFIFQH--AGWLGGAIYGLLYA 312
Cdd:PRK09586 235 LIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMP----LGGWLFEGMSWLFMHlnSNPFGCAVLAGLFL 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 313 PLVITGLHHMFLAVDFQLMgSSLGGTYLWPIVAISNICQGSAAFGAWFVYKR----RKMVKeeglalTSCISGMLGVTEP 388
Cdd:PRK09586 311 IAVVFGVHQGFIPVYFALM-DSQGFNSLFPILAMAGAGQVGAALALYWRAQKhsalRTQVK------GAIIPGLLGVGEP 383
|
410 420
....*....|....*....|....*...
gi 1029844838 389 AMFGVNLPLKYPFIaaisTSCVLGAIVG 416
Cdd:PRK09586 384 LIYGVTLPRMKPFV----TACLGGAAGG 407
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
9-417 |
2.54e-47 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 169.98 E-value: 2.54e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 9 KAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGpGTVDEVYKQFIDETGAQE-A 87
Cdd:PRK09796 10 RSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIG-NTVSQAFQEVVSLLPGDMqP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 88 SKDEAKQAAAKKGNPVQRLIKLLGDIfIPILPAIVTAGLLMGINNLLTMKGLFgpkaliemyPQIADISNIINVIASTAF 167
Cdd:PRK09796 89 AQPVGKPKLTLRRIGAGILDALIGTM-SPLIPAIIGGSMVKLLAMILEMSGVL---------TKGSPTLTILNVIGDGAF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 168 IFLPALIGWSSMRVFGGSPILGIVLGLILMHPQLVSQYDLAKGNIPTwNLFGLEIKQLNYQGQVLPVLIAAYVLAKIEKG 247
Cdd:PRK09796 159 FFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHV-EFALIPVTAVKYTYTVIPALVMTWCLSYIERW 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 248 LNKVVHDSIKMLVVGPVALLVTGFLAFIIIGPVALLIGTGITSGVTFIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVD 327
Cdd:PRK09796 238 VDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 328 FQLMGSSLGGTYLWPIVAISNICQGSAAFGAWFVYKRRKMVKEEGLALTSCIsgMLGVTEPAMFGVNLPLKYPFIAAIST 407
Cdd:PRK09796 318 IQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAI--MAGISEPALYGVAIRLKRPLIASLIS 395
|
410
....*....|
gi 1029844838 408 SCVLGAIVGM 417
Cdd:PRK09796 396 GFICGAVAGM 405
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
111-402 |
6.56e-35 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 132.47 E-value: 6.56e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 111 GDIFIPILPAIVTAGLLMGINNLLTMKGLFgpkaLIEMYPQIADISNIINVIASTAFIFLPALIGWS-SMRVFGGSPILG 189
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGL----PAGGFTGDSPLAEILKQAGSAAFGILPILFAIGiAYGLAGGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 190 IVLGLILMHPQLVSQYD---LAKGNIPTWNLFGLEIKQLNYQGQVLPVLIAAYVLAKIEKGLNKVVHDSIKMLVVGPVAL 266
Cdd:pfam02378 77 AAGLIGLLSFNLAAAISvalTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 267 LVTGFLAFIIIGPVALLIGTGITSGVT----FIFQHAGWLGGAIYGLLYAPLVITGLHHMFLAVDFQLMGSSL----GGT 338
Cdd:pfam02378 157 IITGFVTLLVIGPVLGLIWPAIQGGLNalglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGGSnpiaNQQ 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1029844838 339 YLWP----------IVAISNICQGSAAFGAWFVYKRRKMVKEEGLAltSCISGMLGVTEPAMFGVNLPLKYPFI 402
Cdd:pfam02378 237 AYGAgaahiltggfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSA--ALTPFLFGITEPLEFGFPFVLNPPFF 308
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
6-83 |
3.38e-30 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 112.24 E-value: 3.38e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1029844838 6 EDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDeVYKQFIDETG 83
Cdd:cd00212 2 QLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVAD-VYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
5-82 |
1.39e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 102.12 E-value: 1.39e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1029844838 5 REDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALsNNALVKGQFKADHQYQIVIGPGtVDEVYKQFIDET 82
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAAL-KKLGVKGVVKNGGQVQVIIGPG-VDKVADEIEKLL 76
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
29-110 |
3.39e-16 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 73.55 E-value: 3.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 29 TRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDEVYKQFIDE-TGAQEASKDE---AKQAAAKKGNPVQ 104
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLrVGVADVSKVDdavLKKLGAHGVNPLQ 80
|
....*.
gi 1029844838 105 RLIKLL 110
Cdd:TIGR00826 81 RAVQVI 86
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
11-79 |
2.43e-15 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 77.38 E-value: 2.43e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1029844838 11 IVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIGPGTVDEVYKQFI 79
Cdd:PRK14905 281 LIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGIVEKIHEEMK 349
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
9-40 |
7.80e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.39 E-value: 7.80e-13
10 20 30
....*....|....*....|....*....|..
gi 1029844838 9 KAIVSAIGGKENLEAATHCVTRLRLVLKDESK 40
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
7-68 |
5.57e-09 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 58.20 E-value: 5.57e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1029844838 7 DVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVkGQFKAD-HQYQIVIGP 68
Cdd:PRK10110 451 NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAI-GVVQLNqHNLQVVIGP 512
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
8-67 |
8.35e-08 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 49.66 E-value: 8.35e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 8 VKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNAlVKGQFKADHQYQIVIG 67
Cdd:TIGR00826 30 AAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLG-AHGVNPLQRAVQVISG 88
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
10-48 |
1.81e-04 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 43.94 E-value: 1.81e-04
10 20 30
....*....|....*....|....*....|....*....
gi 1029844838 10 AIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSN 48
Cdd:PRK11089 404 ALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKK 442
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
12-102 |
4.06e-04 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 42.94 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1029844838 12 VSAIGGKENLEAATHCVTRLRLVLKDESKVDkDALSNNALVKGQFKADHQ-YQIVIGPG--TVDEVYKQFIDETGAQEAS 88
Cdd:PRK10255 397 IAAVGGTDNLKAIDACITRLRLTVADSARVN-DAMCKRLGASGVVKLNKQtIQVIVGAKaeSIGDAMKKVVARGPVAAAS 475
|
90
....*....|....
gi 1029844838 89 KDEAKQAAAKKGNP 102
Cdd:PRK10255 476 AEATPATAAPVAKP 489
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
6-67 |
7.68e-04 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 40.08 E-value: 7.68e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1029844838 6 EDVKAIVSAIGGKENLEAATHCVTRLRLVLKDESKVDKDALSNNALVKGQFKADHQYQIVIG 67
Cdd:PRK09702 71 DQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIG 132
|
|
| |
