|
Name |
Accession |
Description |
Interval |
E-value |
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
14-321 |
1.13e-146 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 415.26 E-value: 1.13e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 14 SAALPAGKRSSQLSRRFKQNVPLWIMFIPVAVFYIVFKYTPMLGLVIAFKNYTFYEGIWGSAWTGLQNFEHLFTQAQSVQ 93
Cdd:COG4209 7 KAKRKKKKRKKSFLKRLKRDWQLYLMLLPGLIYLLIFSYLPMYGIVIAFKDYNPFKGIFGSPWVGLKNFKFLFSSPDFWR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 94 IIRNTLLLSVLTVFVGFPFPIMLAIMMNEARKMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQS-GAVNALVEKLTGEA 172
Cdd:COG4209 87 VLRNTLLISLLKLVFGFPLPIILALLLNELRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDtGLVNQLLRALGGEP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 173 YPFLFREWSWIAVFLGSGIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVM 252
Cdd:COG4209 167 INFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNIL 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 253 EVGFDQVYVLQNSIVANISEVISTFIYQIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKRFNK-GLW 321
Cdd:COG4209 247 NVGFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSYATAVGLFKSVVGLILVLIANKIAKKLGEeSLF 316
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
74-316 |
9.45e-12 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 64.46 E-value: 9.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 74 SAWTGLQNFEHLFTQAQSVQIIRNTLLLSVLTVFVGFPFPIMLAIMMNEARKmwFKRTVQTLVYLPHFFSWVIVGGIVVT 153
Cdd:PRK10561 36 SQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVR--GSRFYQTLMLLPYAVAPAVAAVLWIF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 154 LFSQsgAVNALVEKLTGEAYPFLFREWSWIAVFLG--SGIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHV 231
Cdd:PRK10561 114 LFNP--GRGLITHFLAEFGYDWNHAQNSGQAMFLVvfASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 232 TLPGISSTIVLMLILAMGRVMevgFDQVYVLQNSIVANISEVISTFIYQI---GLQGGQFSLTAAlglfESLVGLVLVLI 308
Cdd:PRK10561 192 ALPLIAPVSFFLLVVNLVYAF---FDTFPVIDAATSGGPVQATTTLIYKIyreGFTGLDLSSSAA----QSVVLMFLVIV 264
|
....*...
gi 1087496585 309 TNAIAKRF 316
Cdd:PRK10561 265 LTVVQFRY 272
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
95-305 |
1.28e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 59.60 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 95 IRNTLLLSVLTVFVGFPFPIMLAIMMNEARKmWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNalvekltgeayp 174
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 175 fLFREWSWIAVFLGSGIWkeAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVMEv 254
Cdd:cd06261 68 -ILPGLGLPALILALLLI--APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG- 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1087496585 255 GFDQVYVLQNsivaNISEVISTFIYQIGLQGGQFSLTAALGLFESLVGLVL 305
Cdd:cd06261 144 EFALVSFLGG----GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
36-315 |
9.93e-08 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 53.15 E-value: 9.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 36 LWIMFIPVAVFYIVFKYTPMLGLVIAfknyTFYEGiwGSAWTGLQNFEHLFTQAQSVQIIRNTLLLSVLTVFVGFPFPIM 115
Cdd:TIGR03262 3 ARLLLAGMILALLLFLLLPLLALLTK----SVYDS--DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 116 LAIMMNEARkMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGavnalvekltgeaypfLFREWswiavFLGSGIWKEA 195
Cdd:TIGR03262 77 FAYALTRSR-IPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQG----------------LLKGL-----LGGFSIYGFW 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 196 GFSA-----------IIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVM-EVGFDQVyvlq 263
Cdd:TIGR03262 135 GIVIgevfytfphalMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVItDFGVPKV---- 210
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1087496585 264 nsiVANISEVISTFIYQ--IGLQggQFSLTAALGLFESLVGLVLVLITNAIAKR 315
Cdd:TIGR03262 211 ---IGGDYNVLATDIYKqvIGQQ--NFPMGAVVGVLLLLPALLAFGIDRAIQRR 259
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
109-320 |
2.18e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 50.38 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 109 GFPFPIMLAIMMNEARKMWFKRTVQTLVYLPHFfswvIVGGIVVTLFSQSGavnalvekltgeaypFLFREWSWIAVFLG 188
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSF----VLAILLVVIAILSI---------------LGHGILPAIILALL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 189 SGIWkeagFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVMevgfdqVYVLQNSIVA 268
Cdd:pfam00528 62 GWAG----YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL------GGAVLLEFLG 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1087496585 269 NISEVISTFIyqIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKRFNKGL 320
Cdd:pfam00528 132 SWPGLGLLLI--EAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
14-321 |
1.13e-146 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 415.26 E-value: 1.13e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 14 SAALPAGKRSSQLSRRFKQNVPLWIMFIPVAVFYIVFKYTPMLGLVIAFKNYTFYEGIWGSAWTGLQNFEHLFTQAQSVQ 93
Cdd:COG4209 7 KAKRKKKKRKKSFLKRLKRDWQLYLMLLPGLIYLLIFSYLPMYGIVIAFKDYNPFKGIFGSPWVGLKNFKFLFSSPDFWR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 94 IIRNTLLLSVLTVFVGFPFPIMLAIMMNEARKMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQS-GAVNALVEKLTGEA 172
Cdd:COG4209 87 VLRNTLLISLLKLVFGFPLPIILALLLNELRSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDtGLVNQLLRALGGEP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 173 YPFLFREWSWIAVFLGSGIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVM 252
Cdd:COG4209 167 INFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNIL 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 253 EVGFDQVYVLQNSIVANISEVISTFIYQIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKRFNK-GLW 321
Cdd:COG4209 247 NVGFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSYATAVGLFKSVVGLILVLIANKIAKKLGEeSLF 316
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
22-315 |
2.48e-54 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 179.17 E-value: 2.48e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 22 RSSQLSRRFKQNVPLWIMFIPVAVFYIVFKYTPML-GLVIAFKNYTFYEGiwGSAWTGLQNFEHLFTQAQSVQIIRNTLL 100
Cdd:COG1175 6 SAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLyTLYLSFTDWNLLGP--PPEFVGLDNYARLFTDPRFWNALGNTLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 101 LSVLTVFVGFPFPIMLAIMMNeaRKMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFS-QSGAVNALVEKLTGEAYPFLF-R 178
Cdd:COG1175 84 FTVVSVPLQLVLGLLLALLLN--RKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALLGALGLEPINWLGdP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 179 EWSWIAVFLgSGIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVMEVgFDQ 258
Cdd:COG1175 162 SLALPAVII-VTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQV-FDL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1087496585 259 VYVLQNSIVANISEVISTFIYQIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKR 315
Cdd:COG1175 240 VYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
27-315 |
7.08e-22 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 93.29 E-value: 7.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 27 SRRFKQNVPLWIMFIPVAVFYIVFKYTPMLGLV-IAFKNYTFYEGIWGsAWTgLQNFEHLFTQAQSVQIIRNTLLLS--- 102
Cdd:COG1176 2 SAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLvYSFTTRDPYGGVVP-GFT-LENYARLFTDPLYLKVLLRTLWIAllt 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 103 -VLTVFVGFPFPIMLAIMmnearKMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNALVEK--LTGEAYPFLFre 179
Cdd:COG1176 80 tLICLLLGYPIAYFLARA-----PPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLAlgLIDEPLRLLY-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 180 wSWIAVFLGSgIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLP----GISSTIVLMLILAMGrvmevg 255
Cdd:COG1176 153 -TEFAVVIGL-VYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPlslpGIIAGSLLVFIPALG------ 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 256 fdqVYVLQNSIVANISEVISTFIYQIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKR 315
Cdd:COG1176 225 ---AFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRR 281
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
37-315 |
1.42e-17 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 82.90 E-value: 1.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 37 WIMFIPVAVFYIVFKYTPMLGLViafknytfyegiWGSAWTGLQNFEHLFTQAQSVQIIRNTLLLSVLTVFVGFPFPIML 116
Cdd:COG1178 10 RLLLLLLALLLALLVLLPLLALL------------LRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 117 AIMMnEARKMWFKRTVQTLVYLPhFFSWVIVGGIV-VTLFSQSGAVNALVEKLTGEAYPFLFrewSWIAVFLGSGIWkEA 195
Cdd:COG1178 78 AWLL-ARTDFPGRRLLRWLLLLP-LALPPYVVALAwIALFGPNGLLNTLLRALFGLEPPDIY---GLGGIILVLVLF-NY 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 196 GFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVMEvGFDQVYVLQNSIvanisEVIS 275
Cdd:COG1178 152 PYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLA-DFGTPLVLGGGY-----TTLT 225
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1087496585 276 TFIYQIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKR 315
Cdd:COG1178 226 TAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRR 265
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
43-319 |
1.44e-12 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 66.67 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 43 VAVFYIVFKYTPMLGLVI-AFKNYTFYEGIWgSAWTgLQNFEHLFTQAQSVQIIRNTLLLSVLTVFVGFPFPIMLAIMMn 121
Cdd:COG1177 12 FLALVLLFLYLPILVLVLySFNDSWFLTFPP-EGFT-LRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALAL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 122 EARKMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNalvekltgeaypflfrewSWIAVFLGSGIWkEAGFSAII 201
Cdd:COG1177 89 ARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSG------------------GLWGLILAHVVF-TLPFVVLV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 202 YLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGrvmeVGFDQvYVLQNSIVANISEVISTFIYQi 281
Cdd:COG1177 150 VLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFT----LSFDE-FVITLFLAGPGVTTLPVYIYS- 223
|
250 260 270
....*....|....*....|....*....|....*...
gi 1087496585 282 GLQGGQFSLTAALGLFESLVGLVLVLITNAIAKRFNKG 319
Cdd:COG1177 224 MIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
74-316 |
9.45e-12 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 64.46 E-value: 9.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 74 SAWTGLQNFEHLFTQAQSVQIIRNTLLLSVLTVFVGFPFPIMLAIMMNEARKmwFKRTVQTLVYLPHFFSWVIVGGIVVT 153
Cdd:PRK10561 36 SQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVR--GSRFYQTLMLLPYAVAPAVAAVLWIF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 154 LFSQsgAVNALVEKLTGEAYPFLFREWSWIAVFLG--SGIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHV 231
Cdd:PRK10561 114 LFNP--GRGLITHFLAEFGYDWNHAQNSGQAMFLVvfASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 232 TLPGISSTIVLMLILAMGRVMevgFDQVYVLQNSIVANISEVISTFIYQI---GLQGGQFSLTAAlglfESLVGLVLVLI 308
Cdd:PRK10561 192 ALPLIAPVSFFLLVVNLVYAF---FDTFPVIDAATSGGPVQATTTLIYKIyreGFTGLDLSSSAA----QSVVLMFLVIV 264
|
....*...
gi 1087496585 309 TNAIAKRF 316
Cdd:PRK10561 265 LTVVQFRY 272
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
95-305 |
1.28e-10 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 59.60 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 95 IRNTLLLSVLTVFVGFPFPIMLAIMMNEARKmWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNalvekltgeayp 174
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 175 fLFREWSWIAVFLGSGIWkeAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVMEv 254
Cdd:cd06261 68 -ILPGLGLPALILALLLI--APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG- 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1087496585 255 GFDQVYVLQNsivaNISEVISTFIYQIGLQGGQFSLTAALGLFESLVGLVL 305
Cdd:cd06261 144 EFALVSFLGG----GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
20-315 |
1.99e-09 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 58.25 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 20 GKRSSQLSRRFKQNVPLWIMFIPVAVFYIVfkytPMLGLViafknYTFYEGIWGSAWTgLQNFEHLFTQAQSVQIIRNTL 99
Cdd:COG1178 275 ARRPRRVKLGRWRWLALALCLLLVLLGLLL----PLLALL-----LWSLTKALDDNLT-LDNYRFVLLDPSLLRALLNSL 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 100 LLSVLTVFVGFPFPIMLAIMMnEARKMWFKRTVQTLVYLPHFFSWVIVG-GIVVTL-----FSQSGAVNALVEKLTGEAY 173
Cdd:COG1178 345 LLALLAALLAVLLALLLAYLV-RRRRGRLARLLDRLAMLPYAVPGIVLGlGLLLLFnrplpLLLYGTLAILVLAYVVRFL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 174 PFLFRewswiavflgsgiwkeagfsaiIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVM- 252
Cdd:COG1178 424 PFALR----------------------SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMk 481
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1087496585 253 EVGfdqVYVLqnsIVANISEVISTFIYQIgLQGGQFSLTAALGLFESLVGLVLVLITNAIAKR 315
Cdd:COG1178 482 ELS---ATLL---LRPPGFETLAVLIYQL-ASSGRYGEAAALALLLVLVSLLPVLLLERLLGR 537
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
36-315 |
9.93e-08 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 53.15 E-value: 9.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 36 LWIMFIPVAVFYIVFKYTPMLGLVIAfknyTFYEGiwGSAWTGLQNFEHLFTQAQSVQIIRNTLLLSVLTVFVGFPFPIM 115
Cdd:TIGR03262 3 ARLLLAGMILALLLFLLLPLLALLTK----SVYDS--DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 116 LAIMMNEARkMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGavnalvekltgeaypfLFREWswiavFLGSGIWKEA 195
Cdd:TIGR03262 77 FAYALTRSR-IPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQG----------------LLKGL-----LGGFSIYGFW 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 196 GFSA-----------IIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVM-EVGFDQVyvlq 263
Cdd:TIGR03262 135 GIVIgevfytfphalMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVItDFGVPKV---- 210
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1087496585 264 nsiVANISEVISTFIYQ--IGLQggQFSLTAALGLFESLVGLVLVLITNAIAKR 315
Cdd:TIGR03262 211 ---IGGDYNVLATDIYKqvIGQQ--NFPMGAVVGVLLLLPALLAFGIDRAIQRR 259
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
109-320 |
2.18e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 50.38 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 109 GFPFPIMLAIMMNEARKMWFKRTVQTLVYLPHFfswvIVGGIVVTLFSQSGavnalvekltgeaypFLFREWSWIAVFLG 188
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSF----VLAILLVVIAILSI---------------LGHGILPAIILALL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 189 SGIWkeagFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGRVMevgfdqVYVLQNSIVA 268
Cdd:pfam00528 62 GWAG----YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL------GGAVLLEFLG 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1087496585 269 NISEVISTFIyqIGLQGGQFSLTAALGLFESLVGLVLVLITNAIAKRFNKGL 320
Cdd:pfam00528 132 SWPGLGLLLI--EAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
95-314 |
6.55e-07 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 49.96 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 95 IRNTLLLSVLTVFVGFPFPIMLAIMMNEARKMWFKRTVQTLVYLPHFFSWVIVG--GIVVtlfsqsgavnaLVEKLTGEA 172
Cdd:TIGR02138 65 IVGTLITSLIALLIAVPVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGfwGLFV-----------LVPFLKPHF 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 173 YPFLFREWSWIAVFLGSGiwkeagFSAIIYLA-------------ALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISST 239
Cdd:TIGR02138 134 QPFLGSNLGLIPLFGGPI------LTAGIVLAimilptiasisrdALRAVPRSYKEASYALGATKWETIRRVILPAARSG 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 240 IVLMLILAMGRVMEVGFDQVYVLQNSIVANISEVIS---TFIYQIGLQGGQFSLT--AALGLFE-SLVGLVLVLITNAIA 313
Cdd:TIGR02138 208 IVGAVVLGLGRALGETMAVTMVIGNVFPISPLSLFDpgtTITSLIANQFGEASGGsvHTSALFAlGLVLFVITLLVNILA 287
|
.
gi 1087496585 314 K 314
Cdd:TIGR02138 288 R 288
|
|
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
76-234 |
3.27e-06 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 48.42 E-value: 3.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 76 WTGLQNFEHLFT----QAQSVQIIRNTLLLSVLTVFVGFPFPIMLAIMMN-EARK-MWFKRTVQTLVY-LPHFFSWVIVG 148
Cdd:PRK10999 264 TIGWKNFTRVFTdegiQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQwEALKgKAVYRVLLILPYaVPSFISILIFK 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 149 GivvtLFSQS-GAVNALVEKLTG---EAY--PFLFRewswiAVFLGSGIWKEAGFSAIIYLAALTTIDPSLYEASSMDGA 222
Cdd:PRK10999 344 G----LFNQSfGEINMMLSALFGikpAWFsdPTLAK-----TMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGA 414
|
170
....*....|..
gi 1087496585 223 GKWKQLWHVTLP 234
Cdd:PRK10999 415 GPFQNFFKITLP 426
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
93-252 |
3.72e-06 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 47.22 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 93 QIIRNTLLLSVLTVFVGFPFPIMLAIMMneARK-MWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNALVEKLTGE 171
Cdd:PRK09421 9 QAVLLSLKVSSVAVLFSLPFGILVAWLL--ARCrFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWFGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 172 AYPFlfrewSWIAVFLGSGIwkeAGFSAI---IYLAaLTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAM 248
Cdd:PRK09421 87 SFAF-----SWRGAALAAAV---MAFPLMvraIRLS-LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157
|
....
gi 1087496585 249 GRVM 252
Cdd:PRK09421 158 ARSL 161
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
21-248 |
1.41e-05 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 45.86 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 21 KRSSQLSRRFKQNVPLWIMFIPVAVFYIVfkytPMLGLVI-AFKN----YTFYEGIWGSAWTgLQNFEHLFTQAQSVQII 95
Cdd:COG0395 2 SATARRRRRRLGRILLYLLLILLALLFLF----PLYWMVVtSFKPpaeiFSGPPSLLPSEFT-LENYRAAFTDGPFGRYL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 96 RNTLLLSVLTVFVGfpfpIMLAIMMNEA---RKMWFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNALvekltgea 172
Cdd:COG0395 77 LNSLIVAVVSTVLS----LLLSSLAAYAlarFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTY-------- 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1087496585 173 ypflfreWSWIAVFLGSGIwkeaGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAM 248
Cdd:COG0395 145 -------WGLILPYLAFGL----PFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTF 209
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
24-248 |
1.52e-03 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 39.60 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 24 SQLSRRFKQNVPLWIMFIPVAVFYIVFKYtPMLGLVIafknytfyEGIWGSAWTGLQNFEHLFTQAQSVQIIRNTL---- 99
Cdd:PRK15050 13 AAAARRRRRLRPLLWLLLPLLVLAPLVVY-PLVRVVL--------QSLTGEHGLGLATYRAVLGSPDFRGALLTTLqiaf 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 100 -----------LLSVLTVFVGFPFPIMLAimmnearkmwfkRTVQTLVYLPHFfswvIVGGIVVTLFSQSGAVNALVEKL 168
Cdd:PRK15050 84 astagclvlgvLLALVLAFVPFPGASLVG------------RFIDTFVAFPSF----LITLAFTFLYGSAGSVNIALQRL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 169 TGEAYP---FLFREWSWIAvflgsgiwkeagfSAIIY---------LAALTTIDPSLYEASSMDGAGKWKQLWHVTL--- 233
Cdd:PRK15050 148 FGLEAPpldFLYSPGGVIL-------------AEITFytpfvvrplLAAFAQLDARQLEAAASLGASPWRVARRVILpea 214
|
250
....*....|....*.
gi 1087496585 234 -PGISSTIVLMLILAM 248
Cdd:PRK15050 215 wPALAAGGSLCLLLTL 230
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
95-250 |
2.06e-03 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 38.92 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087496585 95 IRNTLLLSVLTVFVGFPFPIMLAIMMNEARKMwFKRTVQTLVYLPHFFSWVIVGGIVVTLFSQSGAVNALVEkLTGEAYP 174
Cdd:TIGR01581 23 LRLSLATSLASLLLAVIIGIPTAYVLARVRFP-LKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE-AAGIQVI 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1087496585 175 FlfrewSWIAVFLGSgIWKEAGFSAIIYLAALTTIDPSLYEASSMDGAGKWKQLWHVTLPGISSTIVLMLILAMGR 250
Cdd:TIGR01581 101 F-----STLGVVLAQ-TFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWAR 170
|
|
| |
