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Conserved domains on  [gi|1087385268|emb|SDQ89005|]
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Protein of unknown function [Pseudomonas grimontii]

Protein Classification

DUF3392 domain-containing protein( domain architecture ID 10570923)

DUF3392 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3392 pfam11872
Protein of unknown function (DUF3392); This family of proteins are functionally ...
 3-106 2.56e-31

Protein of unknown function (DUF3392); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.


:

Pssm-ID: 432149  Cd Length: 104  Bit Score: 106.11  E-value: 2.56e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087385268   3 LVLDLLATVSRWSRSNLSEISLALVGCLLVLFGADIKGWVEARLGSVAGALRVPLMALLCMIGSGAALIYATPWIVRGLS 82
Cdd:pfam11872   1 LLLDLLATLGRWLRPYLSEIALALVACLLVIFGDDINRFLKRLLGGLHFVLRTLVFILVCAFGYGLLIVWLTPWLAQQLA 80

                          90       100
                  ....*....|....*....|....
gi 1087385268  83 QFNNYSLAPVLVVVLVLIGVVADR 106
Cdd:pfam11872  81 QIPNLWLAPVVIGTFILIGVLAQR 104
 
Name Accession Description Interval E-value
DUF3392 pfam11872
Protein of unknown function (DUF3392); This family of proteins are functionally ...
 3-106 2.56e-31

Protein of unknown function (DUF3392); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.


Pssm-ID: 432149  Cd Length: 104  Bit Score: 106.11  E-value: 2.56e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087385268   3 LVLDLLATVSRWSRSNLSEISLALVGCLLVLFGADIKGWVEARLGSVAGALRVPLMALLCMIGSGAALIYATPWIVRGLS 82
Cdd:pfam11872   1 LLLDLLATLGRWLRPYLSEIALALVACLLVIFGDDINRFLKRLLGGLHFVLRTLVFILVCAFGYGLLIVWLTPWLAQQLA 80

                          90       100
                  ....*....|....*....|....
gi 1087385268  83 QFNNYSLAPVLVVVLVLIGVVADR 106
Cdd:pfam11872  81 QIPNLWLAPVVIGTFILIGVLAQR 104
 
Name Accession Description Interval E-value
DUF3392 pfam11872
Protein of unknown function (DUF3392); This family of proteins are functionally ...
 3-106 2.56e-31

Protein of unknown function (DUF3392); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.


Pssm-ID: 432149  Cd Length: 104  Bit Score: 106.11  E-value: 2.56e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1087385268   3 LVLDLLATVSRWSRSNLSEISLALVGCLLVLFGADIKGWVEARLGSVAGALRVPLMALLCMIGSGAALIYATPWIVRGLS 82
Cdd:pfam11872   1 LLLDLLATLGRWLRPYLSEIALALVACLLVIFGDDINRFLKRLLGGLHFVLRTLVFILVCAFGYGLLIVWLTPWLAQQLA 80

                          90       100
                  ....*....|....*....|....
gi 1087385268  83 QFNNYSLAPVLVVVLVLIGVVADR 106
Cdd:pfam11872  81 QIPNLWLAPVVIGTFILIGVLAQR 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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