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Conserved domains on  [gi|1095099388|emb|SEK26295|]
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general secretion pathway protein D [Pseudomonas sp. NFPP18]

Protein Classification

type II secretion system protein D( domain architecture ID 11494410)

type II secretion system protein D is involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins

CATH:  3.30.1370.120|3.55.50.30
Gene Ontology:  GO:0009279|GO:0015627|GO:0015628
PubMed:  30767847
TCDB:  1.B.22.1.3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 104-732 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


:

Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 710.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 104 LNFVDADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSVVDVG-GVAQVVPEADAKLL 182
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGnGYKIVVPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 183 GGPIYSADKPAGNG--MLTRTFRLQYENAVNLIPVLRPIVSPNNPINAYPGNNTIVVTDYAENLQRVAQIINGIDTPSAI 260
Cdd:TIGR02517  81 PGPIEDGPAPGVGGdqFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 261 DTDVVAVQNGIAVDIATMVAELLETQG-ADQTQKISVIGDPRSNSIIIRAGSPERTELARNLIYKLDNAQSNPSNLHVVY 339
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEGGkTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRVYY 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 340 LRNAQAGKLAQALRGLLTGESDSAGSDGARAMLSGMG-GNSQGAQGASQNSSGTPTASgnlnnsssgsgaygqgssagqg 418
Cdd:TIGR02517 241 LRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVNpGGSQSAQAASSASGGSVSGS---------------------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 419 gtgqqndqntafsaggvtiqADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNL 498
Cdd:TIGR02517 299 --------------------ADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGT 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 499 AGRGGFGGVNLGGSGLVGTPASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 578
Cdd:TIGR02517 359 GGGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQ 438

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 579 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVD--QRASVDAGTVTNK 656
Cdd:TIGR02517 439 EAEINVGQEVPVLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAptTVGSAASGPTFNK 518

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1095099388 657 RAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDSGAGRSIT 732
Cdd:TIGR02517 519 REIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 104-732 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 710.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 104 LNFVDADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSVVDVG-GVAQVVPEADAKLL 182
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGnGYKIVVPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 183 GGPIYSADKPAGNG--MLTRTFRLQYENAVNLIPVLRPIVSPNNPINAYPGNNTIVVTDYAENLQRVAQIINGIDTPSAI 260
Cdd:TIGR02517  81 PGPIEDGPAPGVGGdqFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 261 DTDVVAVQNGIAVDIATMVAELLETQG-ADQTQKISVIGDPRSNSIIIRAGSPERTELARNLIYKLDNAQSNPSNLHVVY 339
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEGGkTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRVYY 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 340 LRNAQAGKLAQALRGLLTGESDSAGSDGARAMLSGMG-GNSQGAQGASQNSSGTPTASgnlnnsssgsgaygqgssagqg 418
Cdd:TIGR02517 241 LRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVNpGGSQSAQAASSASGGSVSGS---------------------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 419 gtgqqndqntafsaggvtiqADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNL 498
Cdd:TIGR02517 299 --------------------ADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGT 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 499 AGRGGFGGVNLGGSGLVGTPASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 578
Cdd:TIGR02517 359 GGGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQ 438

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 579 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVD--QRASVDAGTVTNK 656
Cdd:TIGR02517 439 EAEINVGQEVPVLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAptTVGSAASGPTFNK 518

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1095099388 657 RAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDSGAGRSIT 732
Cdd:TIGR02517 519 REIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 431-743 4.89e-98

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 307.62  E-value: 4.89e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 431 SAGGVTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNlagrggfGGVNLG 510
Cdd:COG1450    40 GAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALG-------GNGGGV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 511 GSGLVGTPASKTSIDVLPKGLNVGVVNGTvdipgigkvlDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPF 590
Cdd:COG1450   113 NFGGTGSLGSLAAAGSLGGGLNLGLLGGG----------NFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPY 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 591 VTGSYVTGGGGtsnNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQR--ASVDAGTVTNKRAIDTSILLDDG 668
Cdd:COG1450   183 VTGSTTTSSTG---NPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSttGGGNGLPTINKREISTTVRVKDG 259

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1095099388 669 QIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDSGAGRSITlNRYDFMRRVQ 743
Cdd:COG1450   260 QTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALT-EEYDRLRALQ 333
Secretin pfam00263
Bacterial type II and III secretion system protein;
557-722 1.18e-52

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 180.02  E-value: 1.18e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 557 ALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTsnnpfqTVQREEVGLKLNVRPQISEGGTVKLDIY 636
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTT------TVEFKDAGLSLKVTPQVTPDGTITLKIN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 637 QEVSSVDQrASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVF 716
Cdd:pfam00263  75 PEVSSPDG-NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIF 153


                  ....*.
gi 1095099388 717 LRPYII 722
Cdd:pfam00263 154 ITPRIV 159
IV PHA00019
phage assembly protein
 432-723 8.98e-49

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 178.08  E-value: 8.98e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 432 AGGVTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEF----GVQWqAGNLAGrggfggv 507
Cdd:PHA00019  159 APGGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDGVDLsfaaGLAS-GGKVAG------- 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 508 nlggsglvGTPASKTSIDVLPKGLNVGVVNGTVdipgigkvldLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQT 587
Cdd:PHA00019  231 --------GFNTARLTTVLSSAGGSFGIFNGNV----------LGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQN 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 588 IPFVTGSyVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDaGTVTNKRAIDTSILLDD 667
Cdd:PHA00019  293 VPFVTGR-VTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIAS-DIITNQRSLQTTVQVKD 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1095099388 668 GQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIR 723
Cdd:PHA00019  371 GQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 104-732 0e+00

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 710.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 104 LNFVDADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSVVDVG-GVAQVVPEADAKLL 182
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGnGYKIVVPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 183 GGPIYSADKPAGNG--MLTRTFRLQYENAVNLIPVLRPIVSPNNPINAYPGNNTIVVTDYAENLQRVAQIINGIDTPSAI 260
Cdd:TIGR02517  81 PGPIEDGPAPGVGGdqFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 261 DTDVVAVQNGIAVDIATMVAELLETQG-ADQTQKISVIGDPRSNSIIIRAGSPERTELARNLIYKLDNAQSNPSNLHVVY 339
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEGGkTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEGGNVRVYY 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 340 LRNAQAGKLAQALRGLLTGESDSAGSDGARAMLSGMG-GNSQGAQGASQNSSGTPTASgnlnnsssgsgaygqgssagqg 418
Cdd:TIGR02517 241 LRNADAEELAKTLQGVFGGGGNEPGSSSSPGLGGAVNpGGSQSAQAASSASGGSVSGS---------------------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 419 gtgqqndqntafsaggvtiqADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNL 498
Cdd:TIGR02517 299 --------------------ADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGT 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 499 AGRGGFGGVNLGGSGLVGTPASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 578
Cdd:TIGR02517 359 GGGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQ 438

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 579 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVD--QRASVDAGTVTNK 656
Cdd:TIGR02517 439 EAEINVGQEVPVLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAptTVGSAASGPTFNK 518

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1095099388 657 RAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDSGAGRSIT 732
Cdd:TIGR02517 519 REIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 431-743 4.89e-98

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 307.62  E-value: 4.89e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 431 SAGGVTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNlagrggfGGVNLG 510
Cdd:COG1450    40 GAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSALG-------GNGGGV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 511 GSGLVGTPASKTSIDVLPKGLNVGVVNGTvdipgigkvlDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPF 590
Cdd:COG1450   113 NFGGTGSLGSLAAAGSLGGGLNLGLLGGG----------NFGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPY 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 591 VTGSYVTGGGGtsnNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQR--ASVDAGTVTNKRAIDTSILLDDG 668
Cdd:COG1450   183 VTGSTTTSSTG---NPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSttGGGNGLPTINKREISTTVRVKDG 259

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1095099388 669 QIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDSGAGRSITlNRYDFMRRVQ 743
Cdd:COG1450   260 QTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALT-EEYDRLRALQ 333
Secretin pfam00263
Bacterial type II and III secretion system protein;
557-722 1.18e-52

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 180.02  E-value: 1.18e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 557 ALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTsnnpfqTVQREEVGLKLNVRPQISEGGTVKLDIY 636
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTT------TVEFKDAGLSLKVTPQVTPDGTITLKIN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 637 QEVSSVDQrASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVF 716
Cdd:pfam00263  75 PEVSSPDG-NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIF 153


                  ....*.
gi 1095099388 717 LRPYII 722
Cdd:pfam00263 154 ITPRIV 159
IV PHA00019
phage assembly protein
 432-723 8.98e-49

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 178.08  E-value: 8.98e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 432 AGGVTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEF----GVQWqAGNLAGrggfggv 507
Cdd:PHA00019  159 APGGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDGVDLsfaaGLAS-GGKVAG------- 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 508 nlggsglvGTPASKTSIDVLPKGLNVGVVNGTVdipgigkvldLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQT 587
Cdd:PHA00019  231 --------GFNTARLTTVLSSAGGSFGIFNGNV----------LGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQN 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 588 IPFVTGSyVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDaGTVTNKRAIDTSILLDD 667
Cdd:PHA00019  293 VPFVTGR-VTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTIAS-DIITNQRSLQTTVQVKD 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1095099388 668 GQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIR 723
Cdd:PHA00019  371 GQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 436-727 3.68e-48

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 179.67  E-value: 3.68e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 436 TIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQW--QAGNLAGRGGFGGVNLGGSG 513
Cdd:COG4796   288 SVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWggSGANGTGNNRGGIGGSLNGT 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 514 LVGTPASKTSIDV-LPKGLNVGVVNGTVDIPGIGKVLDLKVlaRALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVT 592
Cdd:COG4796   368 TAGTPLLPDGLNVnLPAANPAGSLGLTLAKLGGGRLLDLEL--SALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQE 445

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 593 gsyVTGGGGTSnnpfqtVQREEVGLKLNVRPQISEGGTVKLDIyqEVS--SVDQraSVDAGTVT-NKRAIDTSILLDDGQ 669
Cdd:COG4796   446 ---SSSSGATS------VEFKEAVLSLEVTPQITPDGRIILDL--DVSkdSPGE--TVAGGVPAiDTKEIKTQVLVENGE 512

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1095099388 670 IMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDSGA 727
Cdd:COG4796   513 TVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIVKDALA 570
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 420-723 6.64e-44

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 164.02  E-value: 6.64e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 420 TGQQNDQNTAFSAGGvTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQW------ 493
Cdd:TIGR02515 117 TGVTGGSGGLLSPRG-SVTVDPRTNTLIVTDTPENLARIRKLIAELDIPVRQVLIEARIVEATDSFSRELGVRWgitdkn 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 494 --QAGNLAGRGGFGGVNLGGSGLVGTPASKTSIDVLPKGLNVGVVNGT-VDIPGIGKVLDLKVlaRALKSKGGTNVLSTP 570
Cdd:TIGR02515 196 gnGNGTAGGIGGNNGTTATGAGGTGNPPFGDNLNVNLATATTAAGISFaLGKIGSGRLLDLEL--SALESEGKGEIISSP 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 571 NLLTLDNEAASIFVGQTIPFVTgsyVTGGGGTSnnpfqtVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRASVDA 650
Cdd:TIGR02515 274 RVLTANNKEAKIEQGTEIPYQQ---TSSSGATS------VEFKEAVLSLEVTPQITPDGRIIMDLLVSKDSPGVVAQAGG 344

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1095099388 651 GTVT-NKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIR 723
Cdd:TIGR02515 345 GVPAiDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 440-722 1.43e-38

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 145.22  E-value: 1.43e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 440 DATTNTLLISAPDPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDASEFGVQWQAGNLAGRGGFGGVNLGGSGLV-GT 517
Cdd:TIGR02519   4 NPEAGLLTVTATPAQIRRVEEYLESLQERiHRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLARYKALGAANSNDSsGN 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 518 PASKTSIDVLPKGLNVGVVNGTvdipgigkvlDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVT--GSY 595
Cdd:TIGR02519  84 QFSSGLGFLDNIGLPTGVNSGF----------GFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGDNIRYVTeeSST 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 596 VTGGGGTSN-NPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSSVDQRAS--VDAGT-------VTNKRAIDTSILL 665
Cdd:TIGR02519 154 GTTGGTTSTaSSDTRVDSVFSGIVLGVTPQISDDGKVILNVHPSISEVKPQSIdlNPVGNgaevalpEISVKEMSSVLRV 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1095099388 666 DDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYII 722
Cdd:TIGR02519 234 KDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 461-723 1.24e-32

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 131.92  E-value: 1.24e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 461 VIDQLDQRRAQVV-IESLIVEVSEDDASEFGVQWQAGNLAGrggfggvnlggsGLVGTPASKTSIDVLPKGLNVGVVNGt 539
Cdd:COG4964   165 VINLLTVGGPQQVmLKVRVAEVSRSVLKQLGINWSGLGSSG------------GFSFGLLTGGLLSGLLGGATAGAFSG- 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 540 vdipGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVtgsyVTGGGGTsnnpfQTVQREEVGLKL 619
Cdd:COG4964   232 ----FGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIP----VAQGDGT-----ITVEYKEFGVSL 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 620 NVRPQISEGGTVKLDIYQEVSSVDQRASVDAGTVT----NKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIP 695
Cdd:COG4964   299 NFTPTVLSNGRISLKVAPEVSELDPSNAVTLNGITipglTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIP 378

                         250       260
                  ....*....|....*....|....*...
gi 1095099388 696 GLGVLFRNDKRSVTKTNLMVFLRPYIIR 723
Cdd:COG4964   379 ILGALFRSRSFQRNETELVIIVTPYLVK 406
hofQ PRK13568
DNA uptake porin HofQ;
423-725 2.04e-32

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 129.85  E-value: 2.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 423 QNDQNTAFSA-GGVTiqADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNLAGR 501
Cdd:PRK13568  102 QSQRGGLLSPrGSVT--ADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTISSESLQELGVRWGMGEGKQG 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 502 GGFGGVNLGGSGL-VGTPAsktsidvLPKGLNVGVVNGtvdipgigKVLDLKVLAraLKSKGGTNVLSTPNLLTLDNEAA 580
Cdd:PRK13568  180 NTALRINDFNVNLpLPNPA-------ASAGFHLARLGG--------RLLDLELSA--LEQENQVDIIASPRLFTSHQQTA 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 581 SIFVGQTIPFVTGSyvtGGGGTSnnpfqTVQREEVGLKLNVRPQISEGG--TVKLDIYQEVSSVDQRASVDAGTVTNKRA 658
Cdd:PRK13568  243 SIKQGTEIPYTVSS---GKSGST-----SIEFKEAVLGMEVTPKILRNGriTLKLKISQNMPGRTIKRGEGEMLAIDKQE 314

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1095099388 659 IDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRDS 725
Cdd:PRK13568  315 IQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLISAD 381
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 421-724 2.46e-24

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 107.08  E-value: 2.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 421 GQQNDQNTAFSAGGVTIQADATTNTLLI-SAPD--PLYRNLrevIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGN 497
Cdd:TIGR02516 185 GGRQGAGGGRASASPKISADPRTNAVLIrDRPErmAIYEQL---IQQLDVPPRLIEISAWIIDIDASDLSQLGVDWQATL 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 498 LAGrggfggvNLGGSGLVGTPASktsidvlpkglnVGVVNGTVDIPGIGKVLdlkvlAR--ALKSKGGTNVLSTPNLLTL 575
Cdd:TIGR02516 262 GAG-------DRQTGFNVSAGAG------------LGATGSSIVTSDGDYFM-----ARvnALEQTGKAKIVSRPSVLTL 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 576 DNEAASIFVGQTIpFVTgsyVTGgggtsnnpFQTVQREEV--GLKLNVRPQISEGGTVK------LDIYQEVSSVDQRAS 647
Cdd:TIGR02516 318 ENVQAVLDNNRTF-YVK---VSG--------ERVADLESVtaGTSLRVTPRVIGDEGAQrqiklnVDIEDGQQKTDGTST 385

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1095099388 648 VDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYIIRD 724
Cdd:TIGR02516 386 VDALPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462
hofQ PRK10560
outer membrane porin HofQ; Provisional
 431-722 2.60e-24

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 106.06  E-value: 2.60e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 431 SAGGvTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNLAGrggfggvnLG 510
Cdd:PRK10560  115 SAKG-SMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLADAQQ--------AG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 511 GSGLVGTPASKTSIDVLPK--GLNVGVVNGtvdipgigKVLDLKVlaRALKSKGGTNVLSTPNLLTLDNEAASIFVGQTI 588
Cdd:PRK10560  186 GVGQVTTLGSDLSVATATTrvGFNIGRING--------RLLDLEL--SALEQKQQLDIIASPRLLASHLQPASIKQGSEI 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 589 PFVTGSyvTGGGGTSnnpfqtVQREEVGLKLNVRPQISEGGTV--KLDIYQEV-SSVDQRASVDAGTVtNKRAIDTSILL 665
Cdd:PRK10560  256 PYQVSS--GESGATS------VEFKEAVLGMEVTPTVLQKGRIrlKLHISQNVpGQVLQQADGEVLAI-DKQEIETQVEV 326

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1095099388 666 DDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSVTKTNLMVFLRPYII 722
Cdd:PRK10560  327 KSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 383
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
431-708 2.19e-11

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 67.02  E-value: 2.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 431 SAGGVTIQADATTNTLLI---SAPDPLYRNLrevIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNLAGrggfGGV 507
Cdd:PRK15346  232 SQALPVFSADPRQNAVIVrdrAANMAIYRSL---ITQLDQRPQMIEISVSIIDVDAGDINQLGIDWSASASLG----GGK 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 508 NLGGSGLVGTPASKTSidvlpkglnvgvvngTVdipgIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAAsiFVGQT 587
Cdd:PRK15346  305 ISFNSGFADGNASGFS---------------TV----ISNTGNFMVRLNALEKNSKAKILSQPSVVTLNNIQA--VLDKN 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 588 IPFVTgsyvtggggtsnnpfqTVQREEV--------GLKLNVRPQ-ISEGGTVKLDIYQEVSSVDQRASVDAG----TVT 654
Cdd:PRK15346  364 VTFYT----------------KLQGEKVaklesittGSLLRVTPRlIDDNGTQKVMLNLNIQDGQQSATQSETdplpEVQ 427

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1095099388 655 NKRaIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLGVLFRNDKRSV 708
Cdd:PRK15346  428 NSE-IATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDKQS 480
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 199-259 1.31e-09

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 54.91  E-value: 1.31e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1095099388 199 TRTFRLQYENAVNLIPVLRPIVSPNNP------INAYPGNNTIVVTDYAENLQRVAQIINGIDTPSA 259
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLGGSGLlskrgsVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRA 67
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 262-331 1.48e-07

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 49.14  E-value: 1.48e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 262 TDVVAVQNGIAVDIATMVAELLETqGADQTQKISVIGDPRSNSIIIRaGSPERTELARNLIYKLDNAQSN 331
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLGG-SGLLSKRGSVVADPRTNSLIVS-GPPEYVELVRQLIKQLDVPRAQ 68
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
298-717 2.16e-07

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 54.39  E-value: 2.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 298 GDPRSNSIIIrAGSPERTEL----ARNLIYKLDNAQSNPSNLHVVYLRNAQAGKLAQALRGlltgeSDSAGSDGARAMLS 373
Cdd:PRK15339  139 GDNRKGTFYV-SGPPVYVDLvvnaATLMDKQNDGIELGRQKIGVIRLNNTFVGDRTYNLRG-----QKIVIPGIATVIER 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 374 GMGGNSQGAQG-ASQNSSGTPTASGNLNNSSSGSGAYGQGSsagqggtgqQNDQNTAFSAGGVTIQADATTNTLLISAPD 452
Cdd:PRK15339  213 LLNGEEQPSGRqASSEPPAMPPFSANGEKGKAANYAGGMSL---------QEALKQNAAAGDIKIIAYPDTNSLLVKGTA 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 453 PLYRNLREVIDQLDQRRAQVVIESLIVEVSEDDASEFGVQWQAGNLAGRGgfggvnlggsglVGTPASKTSIDVLPKGLN 532
Cdd:PRK15339  284 EQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNWSGSITIGDK------------LGVSLNQSSISTLDGSRF 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 533 VGVVNgtvdipgigkvldlkvlarALKSKGGTNVLSTPNLLTLDNEAAsIFvgqtipfvtgsyvtggggTSNNPFQT--- 609
Cdd:PRK15339  352 IAAVM-------------------ALEQKKKANVVSRPVVLTQENIPA-IF------------------DNNRTFYTklv 393

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1095099388 610 ----VQREEV--GLKLNVRPQISEGGTVKL-----DIYQEVSSVDQRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQ 678
Cdd:PRK15339  394 gernVALEHVtyGTMISVLPRFSADGQIEMsldieDGNEKTPQSDTTTSVDALPEVGRTLISTIARVPQGKSLLIGGYTR 473

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1095099388 679 DGYSQSNDAVPWLSNIPGLGVLFRNdkRSVTKTNLM-VFL 717
Cdd:PRK15339  474 DANTDEVQSIPFLGSLPLIGSLFRY--SSKNKSNIVrVFL 511
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 431-471 3.10e-05

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 42.59  E-value: 3.10e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1095099388 431 SAGGVTIQADATTNTLLISAPDPLYRNLREVIDQLDQRRAQ 471
Cdd:pfam03958  28 LSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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