NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1110278793|emb|SHG32568|]
View 

Phage tail tube protein family protein [Pantoea sesami]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_TTP_13 super family cl24885
Phage tail tube protein family; This is a small family of Siphoviridae phage tail tube ...
 11-145 1.09e-77

Phage tail tube protein family; This is a small family of Siphoviridae phage tail tube proteins. The tube protein polymerizes to form the shaft through which the infecting DNA passes into the host.


The actual alignment was detected with superfamily member pfam16463:

Pssm-ID: 435353  Cd Length: 137  Bit Score: 226.54  E-value: 1.09e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1110278793  11 MLPAGTVVMWGAAGSDVATMKPLINCKALGATGQTGGFVDCTTLIDKNKQFISDLPEGPEKSLGFIDDPANQDFADFLNA 90
Cdd:pfam16463   1 MLPAGTVVKWGLMGAAFSTFKPLINCKALGAMGMTGGFVDCTTLIDTQKQSISDLPDGPEKSLGFIDAPKNPHFAEFLNA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1110278793  91 AENRETVQFYVELPNGRTANMILALSGWQMNEITAPASEVIQITVQGKQNNITWG 145
Cdd:pfam16463  81 AEQRQTVQFYVELPNQRTVLMLLALSGWQMNDISAPASEAIQITVQGKQNKIEWG 135
 
Name Accession Description Interval E-value
Phage_TTP_13 pfam16463
Phage tail tube protein family; This is a small family of Siphoviridae phage tail tube ...
 11-145 1.09e-77

Phage tail tube protein family; This is a small family of Siphoviridae phage tail tube proteins. The tube protein polymerizes to form the shaft through which the infecting DNA passes into the host.


Pssm-ID: 435353  Cd Length: 137  Bit Score: 226.54  E-value: 1.09e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1110278793  11 MLPAGTVVMWGAAGSDVATMKPLINCKALGATGQTGGFVDCTTLIDKNKQFISDLPEGPEKSLGFIDDPANQDFADFLNA 90
Cdd:pfam16463   1 MLPAGTVVKWGLMGAAFSTFKPLINCKALGAMGMTGGFVDCTTLIDTQKQSISDLPDGPEKSLGFIDAPKNPHFAEFLNA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1110278793  91 AENRETVQFYVELPNGRTANMILALSGWQMNEITAPASEVIQITVQGKQNNITWG 145
Cdd:pfam16463  81 AEQRQTVQFYVELPNQRTVLMLLALSGWQMNDISAPASEAIQITVQGKQNKIEWG 135
 
Name Accession Description Interval E-value
Phage_TTP_13 pfam16463
Phage tail tube protein family; This is a small family of Siphoviridae phage tail tube ...
 11-145 1.09e-77

Phage tail tube protein family; This is a small family of Siphoviridae phage tail tube proteins. The tube protein polymerizes to form the shaft through which the infecting DNA passes into the host.


Pssm-ID: 435353  Cd Length: 137  Bit Score: 226.54  E-value: 1.09e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1110278793  11 MLPAGTVVMWGAAGSDVATMKPLINCKALGATGQTGGFVDCTTLIDKNKQFISDLPEGPEKSLGFIDDPANQDFADFLNA 90
Cdd:pfam16463   1 MLPAGTVVKWGLMGAAFSTFKPLINCKALGAMGMTGGFVDCTTLIDTQKQSISDLPDGPEKSLGFIDAPKNPHFAEFLNA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1110278793  91 AENRETVQFYVELPNGRTANMILALSGWQMNEITAPASEVIQITVQGKQNNITWG 145
Cdd:pfam16463  81 AEQRQTVQFYVELPNQRTVLMLLALSGWQMNDISAPASEAIQITVQGKQNKIEWG 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH