|
Name |
Accession |
Description |
Interval |
E-value |
| YqbO |
COG5280 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
276-499 |
2.69e-09 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444091 [Multi-domain] Cd Length: 962 Bit Score: 61.48 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 276 KQFGISSDEALKV---IKDGFIAGADANGEFLSALKEYPAYFKEAGISADQFVAIVAETNKQGVFSDKGIDTIKEANTRL 352
Cdd:COG5280 159 NAFGLSADEASRVadlLAAGAQAGNTTSDELADALKEYAPLAAALGFSLEETLAALALLANAGIKGSDAGTALKEFLIRL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 353 REMTTSTASALDGIGISSKQVQEDLQTGAKttfqIMQEVSAKLDELpeSSAVVGTAIADIFGGPG----EDAGLQYIRTL 428
Cdd:COG5280 239 ADPSKTAAEALEELGINVFDASGKLKGLSE----ILGELAKKFAGL--GEAARAAVLAAIFGDDAgraaIALLLFGTDWY 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1109972671 429 KDISVNLDEVKGKTGELGKVEDDLLASQAE-LTKEVALLFDATGSSF----EKMTAKVETFVnDVLSSLIKDVRTL 499
Cdd:COG5280 313 AKLTAALKNSAGAADEAAATMQDNLAGALEsLKSALEGLAITIGETLlpalRDAVEALTGLA-DWFNELSPAVQEL 387
|
|
| PhageMin_Tail |
pfam10145 |
Phage-related minor tail protein; Members of this family are found in putative phage tail tape ... |
276-414 |
1.40e-08 |
|
Phage-related minor tail protein; Members of this family are found in putative phage tail tape measure proteins.
Pssm-ID: 462962 [Multi-domain] Cd Length: 201 Bit Score: 56.16 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 276 KQFGISSDEALKV---IKDGFIAGADANGEFLSALKEYPAYFKEAGISADQFVAIVAETNKQGVFSDKGIDTIKEANTRL 352
Cdd:pfam10145 66 NAFGLSADDAEEAadvLAAAANNGATEVGDLADALKEVGPVAKAAGLSGEETAAALALLAAAGISGSEAGTALKNFLTRL 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1109972671 353 REMTTSTASALDGIGISSKqvqeDLQTGAKTTFQIMQEVSAKLDELPEssAVVGTAIADIFG 414
Cdd:pfam10145 146 AAPTKEAAKALKKLGISAK----DANGKMKSLSEILEELAQALKGLTD--AQRAAALSALFG 201
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
661-894 |
9.42e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 9.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 661 KKKELQEIRKAEDEMLKLIKDSREKQTQEIEYEYSRQIedlKIRLETEKDLTPRAKDEIGKQILSLEQQKTIALQKLSDE 740
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEE---RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 741 ELK--KDIENRQKLIALQLDSVKAGSEQEYQLKM----QQLVAQRDAELQQKELTEQMKLAIVEKYNKKIDDLSKQHDNA 814
Cdd:pfam02463 277 EEKekKLQEEELKLLAKEEEELKSELLKLERRKVddeeKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 815 VIKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYNDAKKNVADKEIAIEQ 894
Cdd:pfam02463 357 EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE 436
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
652-877 |
9.91e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 9.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 652 KAVAEALKIKKKELQEIRKAEDEMLKLIKDSReKQTQEIEYEYSRQIEDLKIRLETEKDLTPRAkDEIGKQILSLEQQKT 731
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLR-KELEELSRQISALRKDLARLEAEVEQLEERI-AQLSKELTELEAEIE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 732 IALQKLSDE-----ELKKDIENRQKLIALQLDSVKAGSEQ----------------EYQLKMQQLVAQ--------RDAE 782
Cdd:TIGR02168 765 ELEERLEEAeeelaEAEAEIEELEAQIEQLKEELKALREAldelraeltllneeaaNLRERLESLERRiaaterrlEDLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 783 LQQKELTEQMKLAI--VEKYNKKIDDLSKQHD---NAVIKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNamq 857
Cdd:TIGR02168 845 EQIEELSEDIESLAaeIEELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR--- 921
|
250 260
....*....|....*....|
gi 1109972671 858 qlegESIEAFNLRKLQAQNE 877
Cdd:TIGR02168 922 ----EKLAQLELRLEGLEVR 937
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
704-932 |
1.60e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 704 RLE-TEKDLTpRAKD---EIGKQILSLEQQKTIAL--QKLSDEELKKDIEnrqkLIALQLDSVKAgSEQEYQLKMQQLVA 777
Cdd:COG1196 180 KLEaTEENLE-RLEDilgELERQLEPLERQAEKAEryRELKEELKELEAE----LLLLKLRELEA-ELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 778 QRD---AELQQKELT-EQMKLAIVEKyNKKIDDLSKQHDNAVIKKQEDAMKLRFETEIAQAYGNEREIL----------R 843
Cdd:COG1196 254 ELEeleAELAELEAElEELRLELEEL-ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeeelaeleeeL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 844 IKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYNDAKKNVADKEIAIEQAKYDAMATVTNGLIALTDEIGNQDRNFAI 923
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
....*....
gi 1109972671 924 ASKALALAE 932
Cdd:COG1196 413 LERLERLEE 421
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
510-896 |
4.85e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 510 ETKAAVELGKnVAEANVGDEYAKIEAARaRYVKAGLSEEAamKKAKEERL-----QMLNLSLKQEEEYLQETVAINEKYN 584
Cdd:PTZ00121 1180 AARKAEEVRK-AEELRKAEDARKAEAAR-KAEEERKAEEA--RKAEDAKKaeavkKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 585 K--ELRDASFWRQGIGKDRSNAVINKDIASSWNNRMAQ--LSAVESRK-ETINLVSSYTGDADKKKTPIVDPKAVAEALK 659
Cdd:PTZ00121 1256 KfeEARMAHFARRQAAIKAEEARKADELKKAEEKKKADeaKKAEEKKKaDEAKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 660 IK---KKELQEIRKAEDEMLKLIKDSREKQTQEIEY---EYSRQIEDLKIRLEtEKDLTPRAKDEIGKQILSLEQQKTIA 733
Cdd:PTZ00121 1336 KKaeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKkkeEAKKKADAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAA 1414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 734 LQKLSDEELKKDIENRQKLIALQLDSVKAGSEQEYQLKMQQlvaQRDAELQQKELTEQMKLAIVEKY---NKKIDDLSKQ 810
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKaeeAKKADEAKKK 1491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 811 HDNAV-----IKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEG--ESIEAFNLRKLQAQNEYNDAKK 883
Cdd:PTZ00121 1492 AEEAKkkadeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKadELKKAEELKKAEEKKKAEEAKK 1571
|
410
....*....|...
gi 1109972671 884 NVADKEIAIEQAK 896
Cdd:PTZ00121 1572 AEEDKNMALRKAE 1584
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
35-508 |
5.01e-06 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 50.62 E-value: 5.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 35 VEKTLKEDLKAGRISREKYNLKLTENKVAAQKYTDAIRVLNKHIQNEYKEQTELEGSLVRLRAELSNLTASYDRLSRAER 114
Cdd:COG5283 8 VDKPFKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDTRQLSAAQR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 115 nsargkEIQDKINAITDELKEAEEGTQRfyrnvgnYEETLKRFVGINNDFANsllniaqnsngvkgfFSNMKVEASALGS 194
Cdd:COG5283 88 ------RLRSSLEQTNRQLERQQQRLAR-------LGARQDRLKAARARLQR---------------LAGAGAAAAAIGA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 195 TLKALLKNPV-F---MS-IAGVAGVSFAFKWWYDYNKGIKEATKLTKQFTD----------KSG---DDLKIYRSEVQAL 256
Cdd:COG5283 140 ALAASVKPAIdFedaMAdVAATVDLDKSSEQFKALGKQARELSAQTPQSADdiaagqaalaQAGvsaEDILAFTPTAAKL 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 257 ADYYSKDFRDMLTAINSVEKQFGISSDE---ALKVIKDGFIAGADANGEFLSALKEYPAYFKEAGISADQFVAIVAETNK 333
Cdd:COG5283 220 ATAFDTDAEEAAEIAAKILNAFKLPADDverLGDALNYAGNNGATSLADLADALPYVGPVAKALGVSGKEAAALGAALAD 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 334 QGVFSDKGIDTIKEANTRLREMTTSTASALDGIGISSKQVQEDLQTGAKTTFQIMQEVSAK-LDELPESSAVVGTA---- 408
Cdd:COG5283 300 AGIEGEEAGTALRNMLTRLTSPTKAAAKALKKLGIDTQDSKGNLRGLAKILAKQMQKDAQGaLAELLKALKKLDAAkraa 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 409 -IADIFggpgedaGLQYIRTLKDISVNLDEVKgktgeLGKVEDDLLASQAELTKEVALLFDATGSSFEKMTAKVETFVND 487
Cdd:COG5283 380 aLKQLF-------GEEAVSALAPLLQNGDELR-----KQLAVAEAAAAQGSMDKEAAKRTDTLAGQLKLLKNALENLGIS 447
|
490 500
....*....|....*....|.
gi 1109972671 488 VLSSLIKDVRTLFESVEDITE 508
Cdd:COG5283 448 IGEALLPALRELAQALTPVVG 468
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
667-864 |
8.08e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 667 EIRKAEDEMLKLIKDSREKQTQEIEYEY-SRQIEDLKIRLETEKDLTPRAKDEIGKQilsLEQQKTIaLQKLSD--EELK 743
Cdd:smart00787 110 DVKLLMDKQFQLVKTFARLEAKKMWYEWrMKLLEGLKEGLDENLEGLKEDYKLLMKE---LELLNSI-KPKLRDrkDALE 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 744 KDIENRQKLiALQLDSVKAGSEQEYQLKMQQLVAQRDAELQQ-KELTEQMklaivEKYNKKIDDLSKQhdnavikkqeda 822
Cdd:smart00787 186 EELRQLKQL-EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKlEELEEEL-----QELESKIEDLTNK------------ 247
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1109972671 823 mKLRFETEIAQAygnEREILRIK------MEQKLAELNAMQQLEGESI 864
Cdd:smart00787 248 -KSELNTEIAEA---EKKLEQCRgftfkeIEKLKEQLKLLQSLTGWKI 291
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YqbO |
COG5280 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
276-499 |
2.69e-09 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444091 [Multi-domain] Cd Length: 962 Bit Score: 61.48 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 276 KQFGISSDEALKV---IKDGFIAGADANGEFLSALKEYPAYFKEAGISADQFVAIVAETNKQGVFSDKGIDTIKEANTRL 352
Cdd:COG5280 159 NAFGLSADEASRVadlLAAGAQAGNTTSDELADALKEYAPLAAALGFSLEETLAALALLANAGIKGSDAGTALKEFLIRL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 353 REMTTSTASALDGIGISSKQVQEDLQTGAKttfqIMQEVSAKLDELpeSSAVVGTAIADIFGGPG----EDAGLQYIRTL 428
Cdd:COG5280 239 ADPSKTAAEALEELGINVFDASGKLKGLSE----ILGELAKKFAGL--GEAARAAVLAAIFGDDAgraaIALLLFGTDWY 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1109972671 429 KDISVNLDEVKGKTGELGKVEDDLLASQAE-LTKEVALLFDATGSSF----EKMTAKVETFVnDVLSSLIKDVRTL 499
Cdd:COG5280 313 AKLTAALKNSAGAADEAAATMQDNLAGALEsLKSALEGLAITIGETLlpalRDAVEALTGLA-DWFNELSPAVQEL 387
|
|
| PhageMin_Tail |
pfam10145 |
Phage-related minor tail protein; Members of this family are found in putative phage tail tape ... |
276-414 |
1.40e-08 |
|
Phage-related minor tail protein; Members of this family are found in putative phage tail tape measure proteins.
Pssm-ID: 462962 [Multi-domain] Cd Length: 201 Bit Score: 56.16 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 276 KQFGISSDEALKV---IKDGFIAGADANGEFLSALKEYPAYFKEAGISADQFVAIVAETNKQGVFSDKGIDTIKEANTRL 352
Cdd:pfam10145 66 NAFGLSADDAEEAadvLAAAANNGATEVGDLADALKEVGPVAKAAGLSGEETAAALALLAAAGISGSEAGTALKNFLTRL 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1109972671 353 REMTTSTASALDGIGISSKqvqeDLQTGAKTTFQIMQEVSAKLDELPEssAVVGTAIADIFG 414
Cdd:pfam10145 146 AAPTKEAAKALKKLGISAK----DANGKMKSLSEILEELAQALKGLTD--AQRAAALSALFG 201
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
661-894 |
9.42e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 9.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 661 KKKELQEIRKAEDEMLKLIKDSREKQTQEIEYEYSRQIedlKIRLETEKDLTPRAKDEIGKQILSLEQQKTIALQKLSDE 740
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEE---RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 741 ELK--KDIENRQKLIALQLDSVKAGSEQEYQLKM----QQLVAQRDAELQQKELTEQMKLAIVEKYNKKIDDLSKQHDNA 814
Cdd:pfam02463 277 EEKekKLQEEELKLLAKEEEELKSELLKLERRKVddeeKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 815 VIKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYNDAKKNVADKEIAIEQ 894
Cdd:pfam02463 357 EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE 436
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
652-877 |
9.91e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 9.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 652 KAVAEALKIKKKELQEIRKAEDEMLKLIKDSReKQTQEIEYEYSRQIEDLKIRLETEKDLTPRAkDEIGKQILSLEQQKT 731
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLR-KELEELSRQISALRKDLARLEAEVEQLEERI-AQLSKELTELEAEIE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 732 IALQKLSDE-----ELKKDIENRQKLIALQLDSVKAGSEQ----------------EYQLKMQQLVAQ--------RDAE 782
Cdd:TIGR02168 765 ELEERLEEAeeelaEAEAEIEELEAQIEQLKEELKALREAldelraeltllneeaaNLRERLESLERRiaaterrlEDLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 783 LQQKELTEQMKLAI--VEKYNKKIDDLSKQHD---NAVIKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNamq 857
Cdd:TIGR02168 845 EQIEELSEDIESLAaeIEELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR--- 921
|
250 260
....*....|....*....|
gi 1109972671 858 qlegESIEAFNLRKLQAQNE 877
Cdd:TIGR02168 922 ----EKLAQLELRLEGLEVR 937
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
704-932 |
1.60e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 704 RLE-TEKDLTpRAKD---EIGKQILSLEQQKTIAL--QKLSDEELKKDIEnrqkLIALQLDSVKAgSEQEYQLKMQQLVA 777
Cdd:COG1196 180 KLEaTEENLE-RLEDilgELERQLEPLERQAEKAEryRELKEELKELEAE----LLLLKLRELEA-ELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 778 QRD---AELQQKELT-EQMKLAIVEKyNKKIDDLSKQHDNAVIKKQEDAMKLRFETEIAQAYGNEREIL----------R 843
Cdd:COG1196 254 ELEeleAELAELEAElEELRLELEEL-ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeeelaeleeeL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 844 IKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYNDAKKNVADKEIAIEQAKYDAMATVTNGLIALTDEIGNQDRNFAI 923
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
....*....
gi 1109972671 924 ASKALALAE 932
Cdd:COG1196 413 LERLERLEE 421
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
528-799 |
3.37e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 528 DEYAKIeAARARYVKAGLSEEAamkKAKEERLQMLNLSLKQEEEYLQETVAINEKYNKELRDA------SFWRQGIGKDR 601
Cdd:TIGR00618 176 DQYTQL-ALMEFAKKKSLHGKA---ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAlqqtqqSHAYLTQKREA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 602 SNAVINKDIASSWNNR-----MAQLSAVESRKETINLvssytgdaDKKKTPIV-DPKAVAEALKIKKKELQEIRKAEDEM 675
Cdd:TIGR00618 252 QEEQLKKQQLLKQLRArieelRAQEAVLEETQERINR--------ARKAAPLAaHIKAVTQIEQQAQRIHTELQSKMRSR 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 676 LKLIKDSREKQTQEIEYEYSRQIEDL------KIRLETEKDLTPRA----KDEIGKQILSLEQQKTIALQKLSDEELKKD 745
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSIEEQRRLLQTlhsqeiHIRDAHEVATSIREiscqQHTLTQHIHTLQQQKTTLTQKLQSLCKELD 403
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1109972671 746 IENR-QKLIALQLDSVKAGSEQEYQLKMQQLVAQRDAELQQKELTEQMKLAIVEK 799
Cdd:TIGR00618 404 ILQReQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
510-896 |
4.85e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 510 ETKAAVELGKnVAEANVGDEYAKIEAARaRYVKAGLSEEAamKKAKEERL-----QMLNLSLKQEEEYLQETVAINEKYN 584
Cdd:PTZ00121 1180 AARKAEEVRK-AEELRKAEDARKAEAAR-KAEEERKAEEA--RKAEDAKKaeavkKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 585 K--ELRDASFWRQGIGKDRSNAVINKDIASSWNNRMAQ--LSAVESRK-ETINLVSSYTGDADKKKTPIVDPKAVAEALK 659
Cdd:PTZ00121 1256 KfeEARMAHFARRQAAIKAEEARKADELKKAEEKKKADeaKKAEEKKKaDEAKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 660 IK---KKELQEIRKAEDEMLKLIKDSREKQTQEIEY---EYSRQIEDLKIRLEtEKDLTPRAKDEIGKQILSLEQQKTIA 733
Cdd:PTZ00121 1336 KKaeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKkkeEAKKKADAAKKKAE-EKKKADEAKKKAEEDKKKADELKKAA 1414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 734 LQKLSDEELKKDIENRQKLIALQLDSVKAGSEQEYQLKMQQlvaQRDAELQQKELTEQMKLAIVEKY---NKKIDDLSKQ 810
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKaeeAKKADEAKKK 1491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 811 HDNAV-----IKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEG--ESIEAFNLRKLQAQNEYNDAKK 883
Cdd:PTZ00121 1492 AEEAKkkadeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKadELKKAEELKKAEEKKKAEEAKK 1571
|
410
....*....|...
gi 1109972671 884 NVADKEIAIEQAK 896
Cdd:PTZ00121 1572 AEEDKNMALRKAE 1584
|
|
| COG5283 |
COG5283 |
Phage-related tail protein [Mobilome: prophages, transposons]; |
35-508 |
5.01e-06 |
|
Phage-related tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444094 [Multi-domain] Cd Length: 747 Bit Score: 50.62 E-value: 5.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 35 VEKTLKEDLKAGRISREKYNLKLTENKVAAQKYTDAIRVLNKHIQNEYKEQTELEGSLVRLRAELSNLTASYDRLSRAER 114
Cdd:COG5283 8 VDKPFKSALESAKQRVAALAQALKALEAPTRALARALERAKQAAARLQTKYNKLRQSLQRLRQALDQAGIDTRQLSAAQR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 115 nsargkEIQDKINAITDELKEAEEGTQRfyrnvgnYEETLKRFVGINNDFANsllniaqnsngvkgfFSNMKVEASALGS 194
Cdd:COG5283 88 ------RLRSSLEQTNRQLERQQQRLAR-------LGARQDRLKAARARLQR---------------LAGAGAAAAAIGA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 195 TLKALLKNPV-F---MS-IAGVAGVSFAFKWWYDYNKGIKEATKLTKQFTD----------KSG---DDLKIYRSEVQAL 256
Cdd:COG5283 140 ALAASVKPAIdFedaMAdVAATVDLDKSSEQFKALGKQARELSAQTPQSADdiaagqaalaQAGvsaEDILAFTPTAAKL 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 257 ADYYSKDFRDMLTAINSVEKQFGISSDE---ALKVIKDGFIAGADANGEFLSALKEYPAYFKEAGISADQFVAIVAETNK 333
Cdd:COG5283 220 ATAFDTDAEEAAEIAAKILNAFKLPADDverLGDALNYAGNNGATSLADLADALPYVGPVAKALGVSGKEAAALGAALAD 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 334 QGVFSDKGIDTIKEANTRLREMTTSTASALDGIGISSKQVQEDLQTGAKTTFQIMQEVSAK-LDELPESSAVVGTA---- 408
Cdd:COG5283 300 AGIEGEEAGTALRNMLTRLTSPTKAAAKALKKLGIDTQDSKGNLRGLAKILAKQMQKDAQGaLAELLKALKKLDAAkraa 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 409 -IADIFggpgedaGLQYIRTLKDISVNLDEVKgktgeLGKVEDDLLASQAELTKEVALLFDATGSSFEKMTAKVETFVND 487
Cdd:COG5283 380 aLKQLF-------GEEAVSALAPLLQNGDELR-----KQLAVAEAAAAQGSMDKEAAKRTDTLAGQLKLLKNALENLGIS 447
|
490 500
....*....|....*....|.
gi 1109972671 488 VLSSLIKDVRTLFESVEDITE 508
Cdd:COG5283 448 IGEALLPALRELAQALTPVVG 468
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
652-895 |
1.48e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 652 KAVAEALKIKKKELQ--EIRKAEDEMLKLIKDSREKQTQEIEYEysRQIEDLKIRLETEKDltprAKDEIGKQILSLEQQ 729
Cdd:COG1196 216 RELKEELKELEAELLllKLRELEAELEELEAELEELEAELEELE--AELAELEAELEELRL----ELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 730 KTIALQKLSDEELKKDIEnRQKLIALQLDSVKAGSEQEYQLKMQQLVAQRDAELQQKELTEQMKLAIVEkynKKIDDLSK 809
Cdd:COG1196 290 EYELLAELARLEQDIARL-EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE---AELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 810 QHDNAVIKKQEDamklrfETEIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIEAfnLRKLQAQNEYNDAKKNVADKE 889
Cdd:COG1196 366 ALLEAEAELAEA------EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL--ERLEEELEELEEALAELEEEE 437
|
....*.
gi 1109972671 890 IAIEQA 895
Cdd:COG1196 438 EEEEEA 443
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
508-891 |
2.67e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 508 ERETKAAVELgKNVAEANVGDEYAKIEAARaryvKAGLSEEAAMKKAKEERLQMLNLSLKQEEEYLQETVAINEKYNKEL 587
Cdd:PTZ00121 1506 AEAKKKADEA-KKAEEAKKADEAKKAEEAK----KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 588 RDASFWRQgIGKDRSNAVInKDIASSWNNRMAQLSAVESRK---ETINLVSSYTGDADKKKTPIVDPKAVAEALK----- 659
Cdd:PTZ00121 1581 RKAEEAKK-AEEARIEEVM-KLYEEEKKMKAEEAKKAEEAKikaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKkaeee 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 660 -------IKKKELQEIRKAEdEMLKLIKDSREKQTQEI-EYEYSRQIEDLKIRLETEKDLTPRAKDEIGKQILSLEQQKT 731
Cdd:PTZ00121 1659 nkikaaeEAKKAEEDKKKAE-EAKKAEEDEKKAAEALKkEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 732 IALQ-KLSDEELKKDIENRQKLIALQLDSVKAGSE--QEYQLKMQQLVAQRDaELQQKELTEQMK-----LAIVEKYNKK 803
Cdd:PTZ00121 1738 EAEEdKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEirKEKEAVIEEELDEED-EKRRMEVDKKIKdifdnFANIIEGGKE 1816
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 804 ----IDDLSKQHDNAVIKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYN 879
Cdd:PTZ00121 1817 gnlvINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKD 1896
|
410
....*....|..
gi 1109972671 880 DAKKNVADKEIA 891
Cdd:PTZ00121 1897 DIEREIPNNNMA 1908
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
692-931 |
7.90e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 7.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 692 YEYSRQIEDLKIRlETEKDLTpRAKD---EIGKQILSLEQQKTIALQKLsdeELKKDIENRQK-LIALQLDSVKAGSE-- 765
Cdd:TIGR02168 170 YKERRKETERKLE-RTRENLD-RLEDilnELERQLKSLERQAEKAERYK---ELKAELRELELaLLVLRLEELREELEel 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 766 QEYQLKMQQLVAQRDAELQQKELT-EQMKLAIVEKyNKKIDDLSKQHDNAVIKKQedamklRFETEIaQAYGNEREILri 844
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKlEELRLEVSEL-EEEIEELQKELYALANEIS------RLEQQK-QILRERLANL-- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 845 kmEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYNDAKKNVADKEIAIEQAKyDAMATVTNGLIALTDEIGNQDRNFAIA 924
Cdd:TIGR02168 315 --ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE-AELEELESRLEELEEQLETLRSKVAQL 391
|
....*..
gi 1109972671 925 SKALALA 931
Cdd:TIGR02168 392 ELQIASL 398
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
662-860 |
1.46e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 45.71 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 662 KKELQEIRKAEDEMLKLIKDSREKQTQeIEYEYSRQIEDLKIRLETEKdlTPRAKDEigKQILSLEQQK---TIAL--QK 736
Cdd:pfam15709 321 SKALLEKREQEKASRDRLRAERAEMRR-LEVERKRREQEEQRRLQQEQ--LERAEKM--REELELEQQRrfeEIRLrkQR 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 737 LSDEELKKDIENRQKLIALQLDSVKAGSEQE--------YQLKMQQLVAQRDAELQQKELTEQMKLAivEKYNKKIDDLS 808
Cdd:pfam15709 396 LEEERQRQEEEERKQRLQLQAAQERARQQQEefrrklqeLQRKKQQEEAERAEAEKQRQKELEMQLA--EEQKRLMEMAE 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1109972671 809 KQHDNAVIKKQEDAMKLRFETEiaqaygnEReilRIKMEQ--KLAELNAMQQLE 860
Cdd:pfam15709 474 EERLEYQRQKQEAEEKARLEAE-------ER---RQKEEEaaRLALEEAMKQAQ 517
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
659-889 |
2.23e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 659 KIKKKELQEIRKAEDEMLKLIKDSR-----EKQTQ-EIEYEYSRQIEDLKIRLETEKDLtprakdeigkQILSLEQQKTi 732
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVERRRkleeaEKARQaEMDRQAAIYAEQERMAMEREREL----------ERIRQEERKR- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 733 ALQKLSDEELKKDIENRQKLIALQLDsvkagSEQEYQLKMQQLVAQRDAELQQKELTEQMKLAIVEkynkkIDDLSKQHD 812
Cdd:pfam17380 361 ELERIRQEEIAMEISRMRELERLQME-----RQQKNERVRQELEAARKVKILEEERQRKIQQQKVE-----MEQIRAEQE 430
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1109972671 813 NAvikKQEDAMKLRFEteiaqaygNEREILRIKMEqklaELNAMQQLEgesieafnlrKLQAQNEYNDAKKNVADKE 889
Cdd:pfam17380 431 EA---RQREVRRLEEE--------RAREMERVRLE----EQERQQQVE----------RLRQQEEERKRKKLELEKE 482
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
661-877 |
2.61e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 661 KKKELQEIRKAEDEMLKlikDSREKQTQEIEYEYSRQIEDLKIRLETEkdLTPRAKDEIGKQILSLEQQKtialqklsdE 740
Cdd:PRK03918 336 KEERLEELKKKLKELEK---RLEELEERHELYEEAKAKKEELERLKKR--LTGLTPEKLEKELEELEKAK---------E 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 741 ELKKDIENrqklialqLDSVKAGSEQEYQLKMQQLVAQRDAE----LQQKELTEQMKLAIVEKYNKKIDDLSKqhDNAVI 816
Cdd:PRK03918 402 EIEEEISK--------ITARIGELKKEIKELKKAIEELKKAKgkcpVCGRELTEEHRKELLEEYTAELKRIEK--ELKEI 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1109972671 817 KKQEDAMKLRFEtEIAQAYGNEREILRIKmeqKLAELnaMQQLEgESIEAFNLRKLQAQNE 877
Cdd:PRK03918 472 EEKERKLRKELR-ELEKVLKKESELIKLK---ELAEQ--LKELE-EKLKKYNLEELEKKAE 525
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
665-936 |
7.54e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 665 LQEIRKAEDEMLKLIKDSREKQTQEIEY--------EYSRQIED-LKIRLETEKDLTPRA---KDEIGKQILSLEQQKTI 732
Cdd:pfam12128 233 IAGIMKIRPEFTKLQQEFNTLESAELRLshlhfgykSDETLIASrQEERQETSAELNQLLrtlDDQWKEKRDELNGELSA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 733 ALQKLSDEELKKDIENRQKLIALQLDSVKAGSEQEyqlkmQQLVAQRDAELQQKELTEQMKLA--IVEKYNKKIDDLSKQ 810
Cdd:pfam12128 313 ADAAVAKDRSELEALEDQHGAFLDADIETAAADQE-----QLPSWQSELENLEERLKALTGKHqdVTAKYNRRRSKIKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 811 H--DNAVIKKQEDAMK---LRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEyNDAKKNV 885
Cdd:pfam12128 388 NnrDIAGIKDKLAKIRearDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATAT-PELLLQL 466
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1109972671 886 ADKEIAIEQAKyDAMATVTNGLIALTDEIGNQDRNFAIASKALALAEIAIN 936
Cdd:pfam12128 467 ENFDERIERAR-EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLE 516
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
645-865 |
2.72e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 645 KTPIVDPKAVAEALKIKKKELQEIRKAEDEMLKLIKdSREKQTQEIEYE----------YSRQIEDLKIRLETEK----D 710
Cdd:pfam05483 411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQ-AREKEIHDLEIQltaiktseehYLKEVEDLKTELEKEKlkniE 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 711 LTPRAkdeigkQILSLEQQKTIalQKLSDE--ELKK---DIENRQKLIALQLDSVKAGSEQEYQLK------MQQLVAQR 779
Cdd:pfam05483 490 LTAHC------DKLLLENKELT--QEASDMtlELKKhqeDIINCKKQEERMLKQIENLEEKEMNLRdelesvREEFIQKG 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 780 D---------------AELQQKELTEQMKLAI---------VEKYNKKIDDLskQHDNAVIKKQEDA------------- 822
Cdd:pfam05483 562 DevkckldkseenarsIEYEVLKKEKQMKILEnkcnnlkkqIENKNKNIEEL--HQENKALKKKGSAenkqlnayeikvn 639
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1109972671 823 -MKLRFET------EIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIE 865
Cdd:pfam05483 640 kLELELASakqkfeEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVK 689
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
652-895 |
3.36e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 652 KAVAEALKIKKKELQEIRKAEDEMLKLIKDSRE------KQTQEIEYEYSRQIEDLKIRLETEKDLTPRAKDEIGKQILS 725
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAeeyellAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 726 LEQQKTIALQKLSDEELKKDIENRQKLIALQLDSVKAGSEQEYQLKMQQLVAQRDAELQQKELTEQmkLAIVEKYNKKID 805
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ--LEELEEAEEALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 806 DLSKQHDNAVIKKQEDAMKLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLEGESIEAFNLRKLQAQNEYNDAKKNV 885
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
250
....*....|
gi 1109972671 886 ADKEIAIEQA 895
Cdd:COG1196 494 LLLLEAEADY 503
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
566-877 |
6.87e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.48 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 566 LKQEEEYLQETVAINEKYNKELRDASFWRQGIG-KDRSNAVINKDIASS------WNNRMAQLSAVESRKetinlVSSYT 638
Cdd:pfam05483 101 LKQKENKLQENRKIIEAQRKAIQELQFENEKVSlKLEEEIQENKDLIKEnnatrhLCNLLKETCARSAEK-----TKKYE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 639 GDADKKKTPIVDPKAVAEALKIKKKELQ-EIRKAEDEMLKLIKDSREKqTQEIEYEYSRQIEDLKIRLETEKDLTPRAKD 717
Cdd:pfam05483 176 YEREETRQVYMDLNNNIEKMILAFEELRvQAENARLEMHFKLKEDHEK-IQHLEEEYKKEINDKEKQVSLLLIQITEKEN 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 718 EIGKQILSLEQQKTIALQ-----KLSDEELKKDIENRQKLIAlQLDSVKAGSEQEYQlkmQQLVAQRDAELQQK---ELT 789
Cdd:pfam05483 255 KMKDLTFLLEESRDKANQleektKLQDENLKELIEKKDHLTK-ELEDIKMSLQRSMS---TQKALEEDLQIATKticQLT 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 790 EQmKLAIVEKYNKkiddlSKQHDNAVIKKQEDAM-----KLRFETEIAQAYGNEREILRIKMEQKLAELNAMQQLE-GES 863
Cdd:pfam05483 331 EE-KEAQMEELNK-----AKAAHSFVVTEFEATTcsleeLLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKnNKE 404
|
330
....*....|....
gi 1109972671 864 IEAFNLRKLQAQNE 877
Cdd:pfam05483 405 VELEELKKILAEDE 418
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
444-793 |
7.69e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 444 ELGKVEDDLLASQAELTKEVALLFDATgSSFEKMTAKVETFVNDvLSSLIKDVRTLFESVEDITERETKAAVELGKNVAE 523
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELS-QELSDASRKIGEIEKE-IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 524 anVGDEYAKIEAARARYVKAGLSEEAAMKKAKEERLQMLNLSLKQEEEYLQETVAINEKYNKELRDASFWRQGIGKDRSN 603
Cdd:TIGR02169 760 --LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 604 AV-INKDIASSWNNRMAQLSAVESRKEtinlvssytgdadKKKTPIVDPKAVAEALKIKKKELQEIRKAEDEMLKLIKDS 682
Cdd:TIGR02169 838 LQeQRIDLKEQIKSIEKEIENLNGKKE-------------ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 683 REKQTQEIEYEYSRqIEDLKIRLETEKDltprAKDEIGKQILSLEQqktIALQKLSDEELKKDIENRQKLIAlQLDSVKA 762
Cdd:TIGR02169 905 IEELEAQIEKKRKR-LSELKAKLEALEE----ELSEIEDPKGEDEE---IPEEELSLEDVQAELQRVEEEIR-ALEPVNM 975
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1109972671 763 GSEQEY----------QLKMQQLVAQRDAELQQKELTEQMK 793
Cdd:TIGR02169 976 LAIQEYeevlkrldelKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
667-864 |
8.08e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 667 EIRKAEDEMLKLIKDSREKQTQEIEYEY-SRQIEDLKIRLETEKDLTPRAKDEIGKQilsLEQQKTIaLQKLSD--EELK 743
Cdd:smart00787 110 DVKLLMDKQFQLVKTFARLEAKKMWYEWrMKLLEGLKEGLDENLEGLKEDYKLLMKE---LELLNSI-KPKLRDrkDALE 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 744 KDIENRQKLiALQLDSVKAGSEQEYQLKMQQLVAQRDAELQQ-KELTEQMklaivEKYNKKIDDLSKQhdnavikkqeda 822
Cdd:smart00787 186 EELRQLKQL-EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKlEELEEEL-----QELESKIEDLTNK------------ 247
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1109972671 823 mKLRFETEIAQAygnEREILRIK------MEQKLAELNAMQQLEGESI 864
Cdd:smart00787 248 -KSELNTEIAEA---EKKLEQCRgftfkeIEKLKEQLKLLQSLTGWKI 291
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-138 |
8.92e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 8.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1109972671 5 EERVLDIRVRyddaIRKIAEYRTQLDVLHQVEKTLKEDLKAGRISREKYNLKLTENKVAAQKYTDAIRVLNKHIQNEYKE 84
Cdd:COG1196 221 ELKELEAELL----LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1109972671 85 QTELEGSLVRLRAELSNLTASYDRLSRAERN-SARGKEIQDKINAITDELKEAEE 138
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAElEEELEELEEELEELEEELEEAEE 351
|
|
| |
