Terminase large subunit, T4likevirus-type, N-terminal; This entry represents the N-terminal ...
34-225
1.10e-07
Terminase large subunit, T4likevirus-type, N-terminal; This entry represents the N-terminal domain of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. It includes the terminase large subunit of Bacteriophage T4 (terminase gene 17, Gp17). homologs are also found in Gene Transfer Agents (GTA), including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata).
The actual alignment was detected with superfamily member pfam03237:
Pssm-ID: 427210 [Multi-domain] Cd Length: 214 Bit Score: 52.03 E-value: 1.10e-07
Terminase large subunit, T4likevirus-type, N-terminal; This entry represents the N-terminal ...
34-225
1.10e-07
Terminase large subunit, T4likevirus-type, N-terminal; This entry represents the N-terminal domain of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. It includes the terminase large subunit of Bacteriophage T4 (terminase gene 17, Gp17). homologs are also found in Gene Transfer Agents (GTA), including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata).
Pssm-ID: 427210 [Multi-domain] Cd Length: 214 Bit Score: 52.03 E-value: 1.10e-07
Terminase large subunit, T4likevirus-type, N-terminal; This entry represents the N-terminal ...
34-225
1.10e-07
Terminase large subunit, T4likevirus-type, N-terminal; This entry represents the N-terminal domain of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. It includes the terminase large subunit of Bacteriophage T4 (terminase gene 17, Gp17). homologs are also found in Gene Transfer Agents (GTA), including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata).
Pssm-ID: 427210 [Multi-domain] Cd Length: 214 Bit Score: 52.03 E-value: 1.10e-07
Phage terminase large subunit; Initiation of packaging of double-stranded viral DNA involves ...
91-214
1.11e-07
Phage terminase large subunit; Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Pssm-ID: 335802 Cd Length: 201 Bit Score: 52.05 E-value: 1.11e-07
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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