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Conserved domains on  [gi|1170223930|emb|SLO37630|]
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N-Acetyl-D-glucosamine ABC transport system, permease protein [Klebsiella quasivariicola]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
27-285 2.87e-77

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 236.95  E-value: 2.87e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  27 GRSVYDSLFDTRMASDGAQYVGLDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFF 106
Cdd:COG1175    40 LYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 107 PMIIPMVSAAALWLFIFMPGLGLLDhYLAKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPASTREA 186
Cdd:COG1175   120 PWVISPVVVALIWKWLFNPDYGLLN-ALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEA 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 187 ALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFL 266
Cdd:COG1175   199 ARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVV 278

                         250
                  ....*....|....*....
gi 1170223930 267 TLAGLFAFSLINLKLLEKG 285
Cdd:COG1175   279 LFLIILVLTLLQLRLLRRR 297
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
27-285 2.87e-77

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 236.95  E-value: 2.87e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  27 GRSVYDSLFDTRMASDGAQYVGLDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFF 106
Cdd:COG1175    40 LYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 107 PMIIPMVSAAALWLFIFMPGLGLLDhYLAKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPASTREA 186
Cdd:COG1175   120 PWVISPVVVALIWKWLFNPDYGLLN-ALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEA 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 187 ALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFL 266
Cdd:COG1175   199 ARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVV 278

                         250
                  ....*....|....*....
gi 1170223930 267 TLAGLFAFSLINLKLLEKG 285
Cdd:COG1175   279 LFLIILVLTLLQLRLLRRR 297
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
44-289 3.40e-31

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 117.62  E-value: 3.40e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  44 AQYVGLDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIF 123
Cdd:PRK10561   36 SQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 124 MPGLGLLDHYLAKlfgpMNNNWLGRSNS--ALLALALIGVWKFAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKV 201
Cdd:PRK10561  116 NPGRGLITHFLAE----FGYDWNHAQNSgqAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 202 TLPLLRPTLSFVITTALIYSITQIDHVA-VMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFLTLAGLFAFSLINLK 280
Cdd:PRK10561  192 ALPLIAPVSFFLLVVNLVYAFFDTFPVIdAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFR 271


                  ....*....
gi 1170223930 281 LLEKGAHYE 289
Cdd:PRK10561  272 YVESKVRYQ 280
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 93-251 1.07e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.90  E-value: 1.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  93 NHRVNRWLRTAFFFPMIIPMVSAAALWLFIFmpglglldhylaklfgPMNNNWLGRSNSALLALALIGVWkFAGYYMLFF 172
Cdd:cd06261    30 RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGILPGLGLPALILALLL-IAPFARLIR 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1170223930 173 LAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLA 251
Cdd:cd06261    93 RAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILF 171
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 95-277 2.30e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 52.69  E-value: 2.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  95 RVNRWLRTAFFFPMIIPMVsaaALWLFIFMPGlglldhylaklfgpmnnnWLGRSNSALLALALIGVWKFAGYYMLFFLA 174
Cdd:pfam00528  15 RLDRLLRPLIDLLQALPSF---VLAILLVVIA------------------ILSILGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 175 GLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDT 254
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153

                         170       180
                  ....*....|....*....|...
gi 1170223930 255 hdlGKASAATFLTLAGLFAFSLI 277
Cdd:pfam00528 154 ---GPVLAAALILLLLNLLVDIL 173
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 41-223 7.28e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 40.82  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  41 SDGaQYVGLDNFARLFADGVFWQSLVNNL-LYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIP-MVSAAAL 118
Cdd:TIGR03262  33 SDG-DFIGLANFAEYFATPGLLQSLGNSLtVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPsLLPAISL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 119 wLFIFmPGLGLLDHYL--AKLFGPMnnnwlgrsnSALLALALigvWKFAGYYMLfFLAGLQSIPASTREAALMEGATRTQ 196
Cdd:TIGR03262 112 -IYLF-GNQGLLKGLLggFSIYGFW---------GIVIGEVF---YTFPHALMI-LVTALSLADGRLYEAARAMGASPWR 176

                         170       180
                  ....*....|....*....|....*..
gi 1170223930 197 VFFKVTLPLLRPTLSFVITTALIYSIT 223
Cdd:TIGR03262 177 TFFTVTLPGAKYGLISAAFVVFTLVIT 203
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
27-285 2.87e-77

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 236.95  E-value: 2.87e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  27 GRSVYDSLFDTRMASDGAQYVGLDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFF 106
Cdd:COG1175    40 LYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 107 PMIIPMVSAAALWLFIFMPGLGLLDhYLAKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPASTREA 186
Cdd:COG1175   120 PWVISPVVVALIWKWLFNPDYGLLN-ALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEA 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 187 ALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFL 266
Cdd:COG1175   199 ARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVV 278

                         250
                  ....*....|....*....
gi 1170223930 267 TLAGLFAFSLINLKLLEKG 285
Cdd:COG1175   279 LFLIILVLTLLQLRLLRRR 297
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
44-289 3.40e-31

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 117.62  E-value: 3.40e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  44 AQYVGLDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIF 123
Cdd:PRK10561   36 SQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 124 MPGLGLLDHYLAKlfgpMNNNWLGRSNS--ALLALALIGVWKFAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKV 201
Cdd:PRK10561  116 NPGRGLITHFLAE----FGYDWNHAQNSgqAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 202 TLPLLRPTLSFVITTALIYSITQIDHVA-VMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFLTLAGLFAFSLINLK 280
Cdd:PRK10561  192 ALPLIAPVSFFLLVVNLVYAFFDTFPVIdAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFR 271


                  ....*....
gi 1170223930 281 LLEKGAHYE 289
Cdd:PRK10561  272 YVESKVRYQ 280
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 43-225 6.57e-19

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 84.76  E-value: 6.57e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  43 GAQYVGLDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSE--NHRVNRWLRTAFFFPMIIPMVSAAALWL 120
Cdd:COG4209    66 GSPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIVY 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 121 FIFMPGLGLLDHYLaKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFK 200
Cdd:COG4209   146 QFLSPDTGLVNQLL-RALGGEPINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWH 224

                         170       180
                  ....*....|....*....|....*
gi 1170223930 201 VTLPLLRPTlsfvITTALIYSITQI 225
Cdd:COG4209   225 ITLPGIRPT----IVILLILNIGNI 245
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
47-223 2.48e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 69.80  E-value: 2.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  47 VGLDNFARLFADGVFWQSLVNNLLYI----LLTVVPGVTLALLLavalsenHRVN----RWLRTAFFFPMIIPMVSAAAL 118
Cdd:COG1178    38 DGLANFWALLSDPYLWRALGNTLLLAllvtLLSLLLGVPLAWLL-------ARTDfpgrRLLRWLLLLPLALPPYVVALA 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 119 WLFIFMPGlGLLDHYLAKLFGPMNNNWLGrsnsaLLALALIGVWKFAGYYMLFFLAGLQSIPASTREAALMEGATRTQVF 198
Cdd:COG1178   111 WIALFGPN-GLLNTLLRALFGLEPPDIYG-----LGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAF 184

                         170       180
                  ....*....|....*....|....*
gi 1170223930 199 FKVTLPLLRPTLSFVITTALIYSIT 223
Cdd:COG1178   185 RRVTLPLLRPAIAAGALLVFLLCLA 209
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 49-224 2.58e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 59.72  E-value: 2.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  49 LDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSENH-RVNRWLRTAFFFPMIIPMVsAAALWLFIFMPGL 127
Cdd:COG0395    60 LENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRfRGRKLLFLLILATLMIPGQ-VLLIPLYLLFRQL 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 128 GLLDHYLAklfgpmnnnwlgrsnsallaLALIGVWKFAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTLPLLR 207
Cdd:COG0395   139 GLLNTYWG--------------------LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSK 198

                         170
                  ....*....|....*..
gi 1170223930 208 PTLsfvITTALIYSITQ 224
Cdd:COG0395   199 PAL---ATVAIFTFIGA 212
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 93-251 1.07e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.90  E-value: 1.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  93 NHRVNRWLRTAFFFPMIIPMVSAAALWLFIFmpglglldhylaklfgPMNNNWLGRSNSALLALALIGVWkFAGYYMLFF 172
Cdd:cd06261    30 RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGILPGLGLPALILALLL-IAPFARLIR 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1170223930 173 LAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLA 251
Cdd:cd06261    93 RAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILF 171
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 30-290 5.24e-09

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 55.92  E-value: 5.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  30 VYDSLFDTRMASDGAQYVGLDNFARLFADGVFWQSLVNNLLY----ILLTVVPGVTLALLLAVALSenhRVNRWLRTAFF 105
Cdd:COG1176    34 LVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIalltTLICLLLGYPIAYFLARAPP---RWRNLLLLLVI 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 106 FPMIIPMVSAAALWLFIFMPGlGLLDHYLAKL------FGPMNNNWlgrsnSALLALaligVWKFAGYYMLFFLAGLQSI 179
Cdd:COG1176   111 LPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALglidepLRLLYTEF-----AVVIGL----VYVYLPFMVLPLYAALEKI 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 180 PASTREAALMEGATRTQVFFKVTLPLLRP------------TLSFVITTALIysitqidhvavmtrGGPDnaTTVLLYYI 247
Cdd:COG1176   181 DPSLLEAARDLGASPWQTFRRVILPLSLPgiiagsllvfipALGAFVTPALL--------------GGGK--VLMIGNLI 244

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1170223930 248 QNLAWDTHDLGKASAATFLTLAGLFAFSLINLKLLEKGAHYER 290
Cdd:COG1176   245 YQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
malF PRK10999
maltose ABC transporter permease MalF;
134-281 7.83e-09

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 56.12  E-value: 7.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 134 LAKLFGpMNNNWLGRSNSALLALALIGVWkfAGY-YMLFFLAG-LQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLS 211
Cdd:PRK10999  357 LSALFG-IKPAWFSDPTLAKTMILIVNTW--LGYpYMMILCMGlLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLT 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 212 FVITTALIYSITQIDHVAVMTRGGPD--NATTV------LLYYIQNLAWD---THDLGKASA-AT--FLTLAGLfafSLI 277
Cdd:PRK10999  434 PLMIASFAFNFNNFVLIQLLTNGGPDmiGTTTPagytdlLVSYTYRIAFEgggGQDFGLAAAiATliFLLVGAL---AIL 510


                  ....
gi 1170223930 278 NLKL 281
Cdd:PRK10999  511 NLKA 514
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 49-219 2.26e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.00  E-value: 2.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  49 LDNFARLFADGVFWQSLVNNLLYILLTVVPGVTLALLLAVALSenhRVNRWLRTAF-FFPMIIPMV--SAAALWLFIFMP 125
Cdd:COG3833    59 LENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFS---RFRFKGRKAGlLALLLLQMFpaFLALVALYLLLS 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 126 GLGLLDHYLAklfgpmnnnwlgrsnsalLALALIG------VWKFAGYYmlfflaglQSIPASTREAALMEGATRTQVFF 199
Cdd:COG3833   136 ALGLLNTLLG------------------LILVYLGgaipfnTWLMKGYF--------DTIPKELDEAAKIDGASHFQIFF 189

                         170       180
                  ....*....|....*....|
gi 1170223930 200 KVTLPLLRPTLSFVITTALI 219
Cdd:COG3833   190 RIILPLAKPILAVVALLSFI 209
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 95-277 2.30e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 52.69  E-value: 2.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  95 RVNRWLRTAFFFPMIIPMVsaaALWLFIFMPGlglldhylaklfgpmnnnWLGRSNSALLALALIGVWKFAGYYMLFFLA 174
Cdd:pfam00528  15 RLDRLLRPLIDLLQALPSF---VLAILLVVIA------------------ILSILGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 175 GLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDT 254
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153

                         170       180
                  ....*....|....*....|...
gi 1170223930 255 hdlGKASAATFLTLAGLFAFSLI 277
Cdd:pfam00528 154 ---GPVLAAALILLLLNLLVDIL 173
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 49-210 2.31e-08

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 53.96  E-value: 2.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  49 LDNFARLFADGVFWQSLVNNLLY----ILLTVVPGVTLALLLAVAlseNHRVNRWLRTAFFFPMIIP-MVSAAALwlFIF 123
Cdd:COG1177    47 LRWYAELFSDPRLLDALLNSLLIallsTLLATVLGTPAALALARY---RFRGRRLLLALLLLPLVVPgIVLGVAL--LLL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 124 MPGLGLLDHYLaklfgpmnnnwlgrsnSALLALALIGVwkfaGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKVTL 203
Cdd:COG1177   122 FSALGLSGGLW----------------GLILAHVVFTL----PFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTL 181


                  ....*..
gi 1170223930 204 PLLRPTL 210
Cdd:COG1177   182 PLIAPGI 188
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
49-279 5.80e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 53.63  E-value: 5.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  49 LDNFARLFADGVFWQSLVNNLLY----ILLTVVPGVTLALLLAVALSenhRVNRWLRTAFFFPMIIP--MVSAAALWLFI 122
Cdd:COG1178   324 LDNYRFVLLDPSLLRALLNSLLLallaALLAVLLALLLAYLVRRRRG---RLARLLDRLAMLPYAVPgiVLGLGLLLLFN 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 123 FMPGLGLldhylaklfgpmnnnwlgRSNSALLALAligvwkfagyYMLFFL--------AGLQSIPASTREAALMEGATR 194
Cdd:COG1178   401 RPLPLLL------------------YGTLAILVLA----------YVVRFLpfalrsleAALAQIDPSLEEAARSLGASP 452

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 195 TQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGpdnaTTVLLYYIQNLaWDTHDLGKASA-ATFLTLAGLFA 273
Cdd:COG1178   453 LRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG----FETLAVLIYQL-ASSGRYGEAAAlALLLVLVSLLP 527


                  ....*.
gi 1170223930 274 FSLINL 279
Cdd:COG1178   528 VLLLER 533
malG PRK10998
maltose ABC transporter permease MalG;
106-225 7.89e-05

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 43.54  E-value: 7.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 106 FPMIIPMVSAAALWLFI--FMPGLGLLDHyLAKLFgpmnnnwlgrsnsALLALALIGVWKFAGYYmlfflaglQSIPAST 183
Cdd:PRK10998  131 FPAVLSLVALYALFDRLgqYIPFIGLNTH-GGVIF-------------AYLGGIALHVWTIKGYF--------ETIDSSL 188

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1170223930 184 REAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSITQI 225
Cdd:PRK10998  189 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 134-210 1.17e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 42.81  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 134 LAKLFGPmnNNWLGRSNSAL------------LALALIGvwkfAGYYMLFFLAGLQSIPASTREAALMEGATRTQVFFKV 201
Cdd:COG0555   111 LLLLFGP--NGWLGQLLAPLgikvaftplgivLAQTFVS----LPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRV 184


                  ....*....
gi 1170223930 202 TLPLLRPTL 210
Cdd:COG0555   185 ILPLLLPAL 193
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 41-223 7.28e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 40.82  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930  41 SDGaQYVGLDNFARLFADGVFWQSLVNNL-LYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIP-MVSAAAL 118
Cdd:TIGR03262  33 SDG-DFIGLANFAEYFATPGLLQSLGNSLtVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPsLLPAISL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 119 wLFIFmPGLGLLDHYL--AKLFGPMnnnwlgrsnSALLALALigvWKFAGYYMLfFLAGLQSIPASTREAALMEGATRTQ 196
Cdd:TIGR03262 112 -IYLF-GNQGLLKGLLggFSIYGFW---------GIVIGEVF---YTFPHALMI-LVTALSLADGRLYEAARAMGASPWR 176

                         170       180
                  ....*....|....*....|....*..
gi 1170223930 197 VFFKVTLPLLRPTLSFVITTALIYSIT 223
Cdd:TIGR03262 177 TFFTVTLPGAKYGLISAAFVVFTLVIT 203
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 173-222 3.92e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 37.73  E-value: 3.92e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1170223930 173 LAGLQSIPASTREAALMEGATRTQVFFKVTLPLLRPTLSFVITTALIYSI 222
Cdd:COG1174   102 YTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNI 151
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 118-223 7.13e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 36.98  E-value: 7.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1170223930 118 LWLFIFMPGLGLLDHYLAKLFgpmnnnwlgrsnSALLALALIGvwkfAGYYMLFFLAGLQSIPASTREAALMEGATRTQV 197
Cdd:COG0765    69 VQLFFIYFGLPLLGIDLSPFV------------AAVIALTLNS----AAYLAEIVRAGIQSVPKGQWEAARALGLSRWQT 132

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1170223930 198 FFKVTLP-----LLRPTLSFVIT----TALIYSIT 223
Cdd:COG0765   133 MRRIILPqalriILPPLGNEFISllkdTSLVSVIG 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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