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Conserved domains on  [gi|1183594167|emb|SMB29144|]
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Phage tail length tape-measure protein 1 [Escherichia coli]

Protein Classification

phage tail tape measure protein( domain architecture ID 11474537)

phage tail tape measure protein similar to Escherichia virus Lambda tape measure protein, also called minor tail protein H, which controls tail length by stopping tail tube protein polymerization

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
268-471 3.32e-85

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


:

Pssm-ID: 429120  Cd Length: 205  Bit Score: 273.82  E-value: 3.32e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  268 LSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGQLKDMFGGIGPAIKGVGSYVLGLINPFTLA--AAAV 345
Cdd:pfam06791    1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMFGGIGPALKALGGYVLGLINPLTLAaaAAAV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  346 GVLGLAYYKGSQEQDEFNKSLILTGNQLGTTSGQLADIAQRAGNAAdSTTGAAAAVLNQLVRSGKVASSSLEQVTTAIVK 425
Cdd:pfam06791   81 GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAG-GTQGAAAEALAALASTGKIGGEQLEGVIRAAAR 159
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1183594167  426 MSEVTGISTEQLVNDFNEIAKDPVSAISKLNDQYHFLTIATYNQIK 471
Cdd:pfam06791  160 MEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
tape_meas_lam_C super family cl36929
phage tail tape measure protein, lambda family; This model represents a relatively ...
704-1040 6.18e-53

phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]


The actual alignment was detected with superfamily member TIGR01541:

Pssm-ID: 273681 [Multi-domain]  Cd Length: 332  Bit Score: 188.89  E-value: 6.18e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  704 ELVKWRQQIADLESRpssKLTQDQKSLLLHREEITALMEKnVAIEKNNrlikESAEIAAWRDSLQASIDNRQQGYDIQIA 783
Cdd:TIGR01541    2 QLLLLTQQIADRKLK---KLNTADEKSLQSRSDEIIALIK-LEKLLEE----AEQKALEALKKLAEATASIRAQNKRQLD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  784 GYGVGDKNQQRQQELLRIEREYNNQRLQLERDYaDKSRGMSNHVFQEKMQALNDALEREKEIVRQKNEQLDIQAGDWVSG 863
Cdd:TIGR01541   74 RFGLGDKQRERLDARLQIDRTFRKQQRDLNKAM-TAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLAG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  864 ASQGFNNWLDDTKDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKASITGIFDSISN------ 937
Cdd:TIGR01541  153 ARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSliggaa 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  938 SSSGGVLGTIGSAISKFIPNAKGGVYeSPSLNTYSNGIYDSPQFFAFARGAGVFGEAGPEAIMPLTRTSDGSLGVRAinS 1017
Cdd:TIGR01541  233 SGGNSSSGAMASYGAAYVPNFAGGGY-TAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVA--A 309
                          330       340
                   ....*....|....*....|...
gi 1183594167 1018 KSGNGGGDITYAPVYQITIQNDG 1040
Cdd:TIGR01541  310 GSGGLGPNGMFGGETAISINNDG 332
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
92-814 4.06e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.29  E-value: 4.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167   92 EEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQESQAQAFQRMLDKIDPLVAALRNLEQQQDELNAafasgking 171
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA--------- 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  172 sQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVAALQRLIAQLDpvgTAFNRLVEQQKQLNEAKAKGMLSPEMYEELS 251
Cdd:TIGR02168  324 -QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE---ELESRLEELEEQLETLRSKVAQLELQIASLN 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  252 GKLRAMRSELEvtQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTgqspfmvlmqqggqlkdmfggIGPAIKGvgsyv 331
Cdd:TIGR02168  400 NEIERLEARLE--RLEDRRERLQQEIEELLKKLEEAELKELQAELEE---------------------LEEELEE----- 451
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  332 lglinpftlAAAAVGVLGLAYYKGSQEQDEFNKSLILTGNQLGTTSGQLADIAQRAGNAADSTTGAAAAVLNQLVRSGK- 410
Cdd:TIGR02168  452 ---------LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIl 522
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  411 -VASSSL---EQVTTAIvkmSEVTGISTEQLVNDFNEIAKDPVSAISKLNdqYHFLTIATYNQIKALQDEGNQQEAARIA 486
Cdd:TIGR02168  523 gVLSELIsvdEGYEAAI---EAALGGRLQAVVVENLNAAKKAIAFLKQNE--LGRVTFLPLDSIKGTEIQGNDREILKNI 597
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  487 TEA--YSSSMIQRTNQIKENLGYLeTAWKAVADSAkwawDSMLDIGREasLDQKISDVLRQIDEIeknTRPGVF---GLG 561
Cdd:TIGR02168  598 EGFlgVAKDLVKFDPKLRKALSYL-LGGVLVVDDL----DNALELAKK--LRPGYRIVTLDGDLV---RPGGVItggSAK 667
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  562 GIGDGGAQNKRLARLKQQLGVLQAE----KIAQDVLNSSINDYN----KRQQEGIELRQRADAFSKQYQTRE---QQRAS 630
Cdd:TIGR02168  668 TNSSILERRREIEELEEKIEELEEKiaelEKALAELRKELEELEeeleQLRKELEELSRQISALRKDLARLEaevEQLEE 747
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  631 ELAKLEKLKSQY--SKEEYNNLIAQINERYKDPK------QPKAKGYSDDAAQ--RMIDHLNQQ-NALLSSQTELTVKLS 699
Cdd:TIGR02168  748 RIAQLSKELTELeaEIEELEERLEEAEEELAEAEaeieelEAQIEQLKEELKAlrEALDELRAElTLLNEEAANLRERLE 827
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  700 SSEQELVKWRQQIADLESRpSSKLTQDQKSLLLHREEITALMEKnvAIEKNNRLIKESAEIAAWRDSLQASIDNRQQGYD 779
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEELEELIEE--LESELEALLNERASLEEALALLRSELEELSEELR 904
                          730       740       750
                   ....*....|....*....|....*....|....*
gi 1183594167  780 iqiagyGVGDKNQQRQQELLRIEREYNNQRLQLER 814
Cdd:TIGR02168  905 ------ELESKRSELRRELEELREKLAQLELRLEG 933
 
Name Accession Description Interval E-value
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
268-471 3.32e-85

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 273.82  E-value: 3.32e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  268 LSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGQLKDMFGGIGPAIKGVGSYVLGLINPFTLA--AAAV 345
Cdd:pfam06791    1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMFGGIGPALKALGGYVLGLINPLTLAaaAAAV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  346 GVLGLAYYKGSQEQDEFNKSLILTGNQLGTTSGQLADIAQRAGNAAdSTTGAAAAVLNQLVRSGKVASSSLEQVTTAIVK 425
Cdd:pfam06791   81 GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAG-GTQGAAAEALAALASTGKIGGEQLEGVIRAAAR 159
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1183594167  426 MSEVTGISTEQLVNDFNEIAKDPVSAISKLNDQYHFLTIATYNQIK 471
Cdd:pfam06791  160 MEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
tape_meas_lam_C TIGR01541
phage tail tape measure protein, lambda family; This model represents a relatively ...
704-1040 6.18e-53

phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273681 [Multi-domain]  Cd Length: 332  Bit Score: 188.89  E-value: 6.18e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  704 ELVKWRQQIADLESRpssKLTQDQKSLLLHREEITALMEKnVAIEKNNrlikESAEIAAWRDSLQASIDNRQQGYDIQIA 783
Cdd:TIGR01541    2 QLLLLTQQIADRKLK---KLNTADEKSLQSRSDEIIALIK-LEKLLEE----AEQKALEALKKLAEATASIRAQNKRQLD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  784 GYGVGDKNQQRQQELLRIEREYNNQRLQLERDYaDKSRGMSNHVFQEKMQALNDALEREKEIVRQKNEQLDIQAGDWVSG 863
Cdd:TIGR01541   74 RFGLGDKQRERLDARLQIDRTFRKQQRDLNKAM-TAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLAG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  864 ASQGFNNWLDDTKDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKASITGIFDSISN------ 937
Cdd:TIGR01541  153 ARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSliggaa 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  938 SSSGGVLGTIGSAISKFIPNAKGGVYeSPSLNTYSNGIYDSPQFFAFARGAGVFGEAGPEAIMPLTRTSDGSLGVRAinS 1017
Cdd:TIGR01541  233 SGGNSSSGAMASYGAAYVPNFAGGGY-TAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVA--A 309
                          330       340
                   ....*....|....*....|...
gi 1183594167 1018 KSGNGGGDITYAPVYQITIQNDG 1040
Cdd:TIGR01541  310 GSGGLGPNGMFGGETAISINNDG 332
Tape_meas_lam_C pfam09718
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ...
858-932 5.05e-24

Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.


Pssm-ID: 430770 [Multi-domain]  Cd Length: 76  Bit Score: 96.58  E-value: 5.05e-24
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1183594167  858 GDWVSGASQGFNNWLDDTKDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKASITGIF 932
Cdd:pfam09718    1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPL 75
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
476-1077 3.72e-21

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444092 [Multi-domain]  Cd Length: 603  Bit Score: 99.30  E-value: 3.72e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  476 EGNQQEAARIATEAYSSSMIQRTNQIKENLGYLETAWKAVADSAKWAWDSMLDIGREASLDQKISDVLRQIDEIEKNTRP 555
Cdd:COG5281      2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  556 GVFGLGGIGDGGAQNKRLARLKQQLGVLQAEKIAQDVLNSSINDYNKRQQEGIELRQRADAFSKQYQtREQQRASELAKL 635
Cdd:COG5281     82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAK-AAAAAAAAAALA 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  636 EKLKSQYSKEEYNNLIAQINERYKDPKQPKAKGYSDDAAQRMIDHLNQQNALLSSQTELTVKLSSSEQELVKWRQQIADL 715
Cdd:COG5281    161 AAAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAA 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  716 ESRPSSKLTQDQKSLLLHREEITALMEKNVAIEKNNRLIKESAEIAAWRDSLQASIDNRQQGYDIQIAGYGVGDKNQQRQ 795
Cdd:COG5281    241 SAAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAA 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  796 QELLRIEREYNNQRLQLERDYADKSRGmsnhVFQEKMQALNDALEREKEIVRQKNEQLDIQAGDWVSGASQGFNNWLDDT 875
Cdd:COG5281    321 AQALRAAAQALAALAQRALAAAALAAA----AQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSA 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  876 KDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKAsITGIFDSISNSSSGGVLGTIGSAISKFi 955
Cdd:COG5281    397 TNVAAQVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIASIADALANAA-LASAADALGGALAGALGGLFGGGGGAA- 474
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  956 pnAKGGVYESPSLNTYSNGIYDSPQFFAFARGAGVFGEAGPEAIMPLTRTSDGSLGVRAInskSGNGGGDITYAPVYQIT 1035
Cdd:COG5281    475 --AGAAVYAGALGPFASGGVVSGPTFFAMAGGAGLMGEAGPEAIMPLARGADGRLGVAAA---GGGGGAAVVVNITTPDA 549
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 1183594167 1036 IQNDGQNGEIGPQAIKALMGMVDQRVQGNLLNMRRDGGMLSG 1077
Cdd:COG5281    550 AGFRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGG 591
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
92-814 4.06e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.29  E-value: 4.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167   92 EEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQESQAQAFQRMLDKIDPLVAALRNLEQQQDELNAafasgking 171
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA--------- 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  172 sQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVAALQRLIAQLDpvgTAFNRLVEQQKQLNEAKAKGMLSPEMYEELS 251
Cdd:TIGR02168  324 -QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE---ELESRLEELEEQLETLRSKVAQLELQIASLN 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  252 GKLRAMRSELEvtQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTgqspfmvlmqqggqlkdmfggIGPAIKGvgsyv 331
Cdd:TIGR02168  400 NEIERLEARLE--RLEDRRERLQQEIEELLKKLEEAELKELQAELEE---------------------LEEELEE----- 451
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  332 lglinpftlAAAAVGVLGLAYYKGSQEQDEFNKSLILTGNQLGTTSGQLADIAQRAGNAADSTTGAAAAVLNQLVRSGK- 410
Cdd:TIGR02168  452 ---------LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIl 522
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  411 -VASSSL---EQVTTAIvkmSEVTGISTEQLVNDFNEIAKDPVSAISKLNdqYHFLTIATYNQIKALQDEGNQQEAARIA 486
Cdd:TIGR02168  523 gVLSELIsvdEGYEAAI---EAALGGRLQAVVVENLNAAKKAIAFLKQNE--LGRVTFLPLDSIKGTEIQGNDREILKNI 597
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  487 TEA--YSSSMIQRTNQIKENLGYLeTAWKAVADSAkwawDSMLDIGREasLDQKISDVLRQIDEIeknTRPGVF---GLG 561
Cdd:TIGR02168  598 EGFlgVAKDLVKFDPKLRKALSYL-LGGVLVVDDL----DNALELAKK--LRPGYRIVTLDGDLV---RPGGVItggSAK 667
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  562 GIGDGGAQNKRLARLKQQLGVLQAE----KIAQDVLNSSINDYN----KRQQEGIELRQRADAFSKQYQTRE---QQRAS 630
Cdd:TIGR02168  668 TNSSILERRREIEELEEKIEELEEKiaelEKALAELRKELEELEeeleQLRKELEELSRQISALRKDLARLEaevEQLEE 747
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  631 ELAKLEKLKSQY--SKEEYNNLIAQINERYKDPK------QPKAKGYSDDAAQ--RMIDHLNQQ-NALLSSQTELTVKLS 699
Cdd:TIGR02168  748 RIAQLSKELTELeaEIEELEERLEEAEEELAEAEaeieelEAQIEQLKEELKAlrEALDELRAElTLLNEEAANLRERLE 827
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  700 SSEQELVKWRQQIADLESRpSSKLTQDQKSLLLHREEITALMEKnvAIEKNNRLIKESAEIAAWRDSLQASIDNRQQGYD 779
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEELEELIEE--LESELEALLNERASLEEALALLRSELEELSEELR 904
                          730       740       750
                   ....*....|....*....|....*....|....*
gi 1183594167  780 iqiagyGVGDKNQQRQQELLRIEREYNNQRLQLER 814
Cdd:TIGR02168  905 ------ELESKRSELRRELEELREKLAQLELRLEG 933
PRK11281 PRK11281
mechanosensitive channel MscK;
532-856 2.01e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 45.67  E-value: 2.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  532 EASLDQKISDVLRQIDEIEKntrpgvfglggigdggaQNKRLARLKQQLGvlQA-EKIAQDvlNSSINDYNKRQQEgiEL 610
Cdd:PRK11281    58 DKLVQQDLEQTLALLDKIDR-----------------QKEETEQLKQQLA--QApAKLRQA--QAELEALKDDNDE--ET 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  611 RQRADAFS-KQYQTREQQRASELAKLEKLKSQYS--------------KEEYNNL--IAQINERYKDPKQPKAKGYSD-- 671
Cdd:PRK11281   115 RETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNsqlvslqtqperaqAALYANSqrLQQIRNLLKGGKVGGKALRPSqr 194
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  672 ---DAAQRMIDHLNQQN-ALLSSQTELTVkLSSSEQELVKWR-----QQIADLESRPSSK-LTQDQKSL----------- 730
Cdd:PRK11281   195 vllQAEQALLNAQNDLQrKSLEGNTQLQD-LLQKQRDYLTARiqrleHQLQLLQEAINSKrLTLSEKTVqeaqsqdeaar 273
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  731 -----LLHREeitalMEKNVAI--------EKNNRLIKESAEIAAWRDSLQASidnrQQGYDIQIA---GYGVGDK--NQ 792
Cdd:PRK11281   274 iqanpLVAQE-----LEINLQLsqrllkatEKLNTLTQQNLRVKNWLDRLTQS----ERNIKEQISvlkGSLLLSRilYQ 344
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  793 QRQ--------QEL------LRIER-EYNNQRLQLER--DYADK-SRGMSNHVFQEKMQALNDALEREKEIVRQKNEQLD 854
Cdd:PRK11281   345 QQQalpsadliEGLadriadLRLEQfEINQQRDALFQpdAYIDKlEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLN 424

                   ..
gi 1183594167  855 IQ 856
Cdd:PRK11281   425 NQ 426
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
535-870 8.22e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.39  E-value: 8.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  535 LDQKISDVLRQIDEIEKNTRpgvfglGGIGDGGAQNKRLARLKQQLGVLQAE-KIAQDVLNSSINDYNKRQQEGIELRQR 613
Cdd:COG1196    237 LEAELEELEAELEELEAELE------ELEAELAELEAELEELRLELEELELElEEAQAEEYELLAELARLEQDIARLEER 310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  614 ADAFSKQYQTREQQRASELAKLEKLKSQysKEEYNNLIAQINERYKDPKQPKAkgysdDAAQRMIDHLNQQNALLSSQTE 693
Cdd:COG1196    311 RRELEERLEELEEELAELEEELEELEEE--LEELEEELEEAEEELEEAEAELA-----EAEEALLEAEAELAEAEEELEE 383
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  694 LTVKLSSSEQELVKWRQQIADLESRpsskLTQDQKSLLLHREEITALMEKnvAIEKNNRLIKESAEIAAwRDSLQASIDN 773
Cdd:COG1196    384 LAEELLEALRAAAELAAQLEELEEA----EEALLERLERLEEELEELEEA--LAELEEEEEEEEEALEE-AAEEEAELEE 456
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  774 RQQGYDIQIAGYGVGDKNQQRQQELLRIEREYNNQRLQLERDYADKSRGMSNHVFQEKMQALNDALEREKEIVRQKNEQL 853
Cdd:COG1196    457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
                          330
                   ....*....|....*..
gi 1183594167  854 DIQAGDWVSGASQGFNN 870
Cdd:COG1196    537 EAALEAALAAALQNIVV 553
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
497-857 7.79e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 40.59  E-value: 7.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  497 RTNQIKENLGYLETAWKAVADSAKwawdsmldiGREASLDQKISDVLRQIDEIEknTRPGVFGLGGIGDGGAQNKRL--- 573
Cdd:pfam12128  284 TSAELNQLLRTLDDQWKEKRDELN---------GELSAADAAVAKDRSELEALE--DQHGAFLDADIETAAADQEQLpsw 352
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  574 --------ARLKQQLGVLQAEKIAQDVLNSSINDYNKRQQEGIELRQradafSKQYQTREQQRASELAKLEKLKSQYsKE 645
Cdd:pfam12128  353 qselenleERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKL-----AKIREARDRQLAVAEDDLQALESEL-RE 426
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  646 EYNNLIAQINE---RYK---------------DPKQPKAKGYSDDAAQRMIDHLNQQNA-LLSSQTELTVKLSSSEQELV 706
Cdd:pfam12128  427 QLEAGKLEFNEeeyRLKsrlgelklrlnqataTPELLLQLENFDERIERAREEQEAANAeVERLQSELRQARKRRDQASE 506
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  707 KWRQQIADLESRPS--------------------SKLTQDQK--------SLLLHREEITALMEKNVAIEKNN----RLI 754
Cdd:pfam12128  507 ALRQASRRLEERQSaldelelqlfpqagtllhflRKEAPDWEqsigkvisPELLHRTDLDPEVWDGSVGGELNlygvKLD 586
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  755 KESAEIAAWRDS---LQASIDNRQQGYDIQiagygvGDKNQQRQQELLRIEREYNNQRLQLER-----DYADKSRGMSNH 826
Cdd:pfam12128  587 LKRIDVPEWAASeeeLRERLDKAEEALQSA------REKQAAAEEQLVQANGELEKASREETFartalKNARLDLRRLFD 660
                          410       420       430
                   ....*....|....*....|....*....|.
gi 1183594167  827 VFQEKMQALNDALEREKEIVRQKNEQLDIQA 857
Cdd:pfam12128  661 EKQSEKDKKNKALAERKDSANERLNSLEAQL 691
 
Name Accession Description Interval E-value
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
268-471 3.32e-85

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 273.82  E-value: 3.32e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  268 LSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGQLKDMFGGIGPAIKGVGSYVLGLINPFTLA--AAAV 345
Cdd:pfam06791    1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMFGGIGPALKALGGYVLGLINPLTLAaaAAAV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  346 GVLGLAYYKGSQEQDEFNKSLILTGNQLGTTSGQLADIAQRAGNAAdSTTGAAAAVLNQLVRSGKVASSSLEQVTTAIVK 425
Cdd:pfam06791   81 GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAG-GTQGAAAEALAALASTGKIGGEQLEGVIRAAAR 159
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1183594167  426 MSEVTGISTEQLVNDFNEIAKDPVSAISKLNDQYHFLTIATYNQIK 471
Cdd:pfam06791  160 MEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
tape_meas_lam_C TIGR01541
phage tail tape measure protein, lambda family; This model represents a relatively ...
704-1040 6.18e-53

phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273681 [Multi-domain]  Cd Length: 332  Bit Score: 188.89  E-value: 6.18e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  704 ELVKWRQQIADLESRpssKLTQDQKSLLLHREEITALMEKnVAIEKNNrlikESAEIAAWRDSLQASIDNRQQGYDIQIA 783
Cdd:TIGR01541    2 QLLLLTQQIADRKLK---KLNTADEKSLQSRSDEIIALIK-LEKLLEE----AEQKALEALKKLAEATASIRAQNKRQLD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  784 GYGVGDKNQQRQQELLRIEREYNNQRLQLERDYaDKSRGMSNHVFQEKMQALNDALEREKEIVRQKNEQLDIQAGDWVSG 863
Cdd:TIGR01541   74 RFGLGDKQRERLDARLQIDRTFRKQQRDLNKAM-TAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLAG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  864 ASQGFNNWLDDTKDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKASITGIFDSISN------ 937
Cdd:TIGR01541  153 ARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSliggaa 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  938 SSSGGVLGTIGSAISKFIPNAKGGVYeSPSLNTYSNGIYDSPQFFAFARGAGVFGEAGPEAIMPLTRTSDGSLGVRAinS 1017
Cdd:TIGR01541  233 SGGNSSSGAMASYGAAYVPNFAGGGY-TAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVA--A 309
                          330       340
                   ....*....|....*....|...
gi 1183594167 1018 KSGNGGGDITYAPVYQITIQNDG 1040
Cdd:TIGR01541  310 GSGGLGPNGMFGGETAISINNDG 332
Tape_meas_lam_C pfam09718
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ...
858-932 5.05e-24

Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.


Pssm-ID: 430770 [Multi-domain]  Cd Length: 76  Bit Score: 96.58  E-value: 5.05e-24
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1183594167  858 GDWVSGASQGFNNWLDDTKDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKASITGIF 932
Cdd:pfam09718    1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPL 75
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
476-1077 3.72e-21

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444092 [Multi-domain]  Cd Length: 603  Bit Score: 99.30  E-value: 3.72e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  476 EGNQQEAARIATEAYSSSMIQRTNQIKENLGYLETAWKAVADSAKWAWDSMLDIGREASLDQKISDVLRQIDEIEKNTRP 555
Cdd:COG5281      2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  556 GVFGLGGIGDGGAQNKRLARLKQQLGVLQAEKIAQDVLNSSINDYNKRQQEGIELRQRADAFSKQYQtREQQRASELAKL 635
Cdd:COG5281     82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAK-AAAAAAAAAALA 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  636 EKLKSQYSKEEYNNLIAQINERYKDPKQPKAKGYSDDAAQRMIDHLNQQNALLSSQTELTVKLSSSEQELVKWRQQIADL 715
Cdd:COG5281    161 AAAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAA 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  716 ESRPSSKLTQDQKSLLLHREEITALMEKNVAIEKNNRLIKESAEIAAWRDSLQASIDNRQQGYDIQIAGYGVGDKNQQRQ 795
Cdd:COG5281    241 SAAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAA 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  796 QELLRIEREYNNQRLQLERDYADKSRGmsnhVFQEKMQALNDALEREKEIVRQKNEQLDIQAGDWVSGASQGFNNWLDDT 875
Cdd:COG5281    321 AQALRAAAQALAALAQRALAAAALAAA----AQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSA 396
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  876 KDISEQIKSTTTQMFDGMTDALGDFVTTGKANFRSFATSVISDLSRIALKAsITGIFDSISNSSSGGVLGTIGSAISKFi 955
Cdd:COG5281    397 TNVAAQVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIASIADALANAA-LASAADALGGALAGALGGLFGGGGGAA- 474
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  956 pnAKGGVYESPSLNTYSNGIYDSPQFFAFARGAGVFGEAGPEAIMPLTRTSDGSLGVRAInskSGNGGGDITYAPVYQIT 1035
Cdd:COG5281    475 --AGAAVYAGALGPFASGGVVSGPTFFAMAGGAGLMGEAGPEAIMPLARGADGRLGVAAA---GGGGGAAVVVNITTPDA 549
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 1183594167 1036 IQNDGQNGEIGPQAIKALMGMVDQRVQGNLLNMRRDGGMLSG 1077
Cdd:COG5281    550 AGFRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGG 591
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
92-814 4.06e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.29  E-value: 4.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167   92 EEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQESQAQAFQRMLDKIDPLVAALRNLEQQQDELNAafasgking 171
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA--------- 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  172 sQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVAALQRLIAQLDpvgTAFNRLVEQQKQLNEAKAKGMLSPEMYEELS 251
Cdd:TIGR02168  324 -QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE---ELESRLEELEEQLETLRSKVAQLELQIASLN 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  252 GKLRAMRSELEvtQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTgqspfmvlmqqggqlkdmfggIGPAIKGvgsyv 331
Cdd:TIGR02168  400 NEIERLEARLE--RLEDRRERLQQEIEELLKKLEEAELKELQAELEE---------------------LEEELEE----- 451
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  332 lglinpftlAAAAVGVLGLAYYKGSQEQDEFNKSLILTGNQLGTTSGQLADIAQRAGNAADSTTGAAAAVLNQLVRSGK- 410
Cdd:TIGR02168  452 ---------LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIl 522
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  411 -VASSSL---EQVTTAIvkmSEVTGISTEQLVNDFNEIAKDPVSAISKLNdqYHFLTIATYNQIKALQDEGNQQEAARIA 486
Cdd:TIGR02168  523 gVLSELIsvdEGYEAAI---EAALGGRLQAVVVENLNAAKKAIAFLKQNE--LGRVTFLPLDSIKGTEIQGNDREILKNI 597
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  487 TEA--YSSSMIQRTNQIKENLGYLeTAWKAVADSAkwawDSMLDIGREasLDQKISDVLRQIDEIeknTRPGVF---GLG 561
Cdd:TIGR02168  598 EGFlgVAKDLVKFDPKLRKALSYL-LGGVLVVDDL----DNALELAKK--LRPGYRIVTLDGDLV---RPGGVItggSAK 667
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  562 GIGDGGAQNKRLARLKQQLGVLQAE----KIAQDVLNSSINDYN----KRQQEGIELRQRADAFSKQYQTRE---QQRAS 630
Cdd:TIGR02168  668 TNSSILERRREIEELEEKIEELEEKiaelEKALAELRKELEELEeeleQLRKELEELSRQISALRKDLARLEaevEQLEE 747
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  631 ELAKLEKLKSQY--SKEEYNNLIAQINERYKDPK------QPKAKGYSDDAAQ--RMIDHLNQQ-NALLSSQTELTVKLS 699
Cdd:TIGR02168  748 RIAQLSKELTELeaEIEELEERLEEAEEELAEAEaeieelEAQIEQLKEELKAlrEALDELRAElTLLNEEAANLRERLE 827
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  700 SSEQELVKWRQQIADLESRpSSKLTQDQKSLLLHREEITALMEKnvAIEKNNRLIKESAEIAAWRDSLQASIDNRQQGYD 779
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQ-IEELSEDIESLAAEIEELEELIEE--LESELEALLNERASLEEALALLRSELEELSEELR 904
                          730       740       750
                   ....*....|....*....|....*....|....*
gi 1183594167  780 iqiagyGVGDKNQQRQQELLRIEREYNNQRLQLER 814
Cdd:TIGR02168  905 ------ELESKRSELRRELEELREKLAQLELRLEG 933
PRK11281 PRK11281
mechanosensitive channel MscK;
532-856 2.01e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 45.67  E-value: 2.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  532 EASLDQKISDVLRQIDEIEKntrpgvfglggigdggaQNKRLARLKQQLGvlQA-EKIAQDvlNSSINDYNKRQQEgiEL 610
Cdd:PRK11281    58 DKLVQQDLEQTLALLDKIDR-----------------QKEETEQLKQQLA--QApAKLRQA--QAELEALKDDNDE--ET 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  611 RQRADAFS-KQYQTREQQRASELAKLEKLKSQYS--------------KEEYNNL--IAQINERYKDPKQPKAKGYSD-- 671
Cdd:PRK11281   115 RETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNsqlvslqtqperaqAALYANSqrLQQIRNLLKGGKVGGKALRPSqr 194
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  672 ---DAAQRMIDHLNQQN-ALLSSQTELTVkLSSSEQELVKWR-----QQIADLESRPSSK-LTQDQKSL----------- 730
Cdd:PRK11281   195 vllQAEQALLNAQNDLQrKSLEGNTQLQD-LLQKQRDYLTARiqrleHQLQLLQEAINSKrLTLSEKTVqeaqsqdeaar 273
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  731 -----LLHREeitalMEKNVAI--------EKNNRLIKESAEIAAWRDSLQASidnrQQGYDIQIA---GYGVGDK--NQ 792
Cdd:PRK11281   274 iqanpLVAQE-----LEINLQLsqrllkatEKLNTLTQQNLRVKNWLDRLTQS----ERNIKEQISvlkGSLLLSRilYQ 344
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  793 QRQ--------QEL------LRIER-EYNNQRLQLER--DYADK-SRGMSNHVFQEKMQALNDALEREKEIVRQKNEQLD 854
Cdd:PRK11281   345 QQQalpsadliEGLadriadLRLEQfEINQQRDALFQpdAYIDKlEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLN 424

                   ..
gi 1183594167  855 IQ 856
Cdd:PRK11281   425 NQ 426
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
50-268 5.32e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 44.28  E-value: 5.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167   50 EDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDK--GLIDKEE----YEFLVRKLNETTEELSG--VAQAQREAEKA 121
Cdd:PRK03918   448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREleKVLKKESelikLKELAEQLKELEEKLKKynLEELEKKAEEY 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  122 GKLAAAQQ--ESQAQAFQRMLDKIDPLVAALRNLEQQQDELNAAFAS-----GKINGSQFENYSRKIQETR---RELTGE 191
Cdd:PRK03918   528 EKLKEKLIklKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEllkelEELGFESVEELEERLKELEpfyNEYLEL 607
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1183594167  192 AQAEREAAKAHDEQVAALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKgmLSPEMYEELSGKLRAMRSELEVTQSQL 268
Cdd:PRK03918   608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK--YSEEEYEELREEYLELSRELAGLRAEL 682
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
535-870 8.22e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.39  E-value: 8.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  535 LDQKISDVLRQIDEIEKNTRpgvfglGGIGDGGAQNKRLARLKQQLGVLQAE-KIAQDVLNSSINDYNKRQQEGIELRQR 613
Cdd:COG1196    237 LEAELEELEAELEELEAELE------ELEAELAELEAELEELRLELEELELElEEAQAEEYELLAELARLEQDIARLEER 310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  614 ADAFSKQYQTREQQRASELAKLEKLKSQysKEEYNNLIAQINERYKDPKQPKAkgysdDAAQRMIDHLNQQNALLSSQTE 693
Cdd:COG1196    311 RRELEERLEELEEELAELEEELEELEEE--LEELEEELEEAEEELEEAEAELA-----EAEEALLEAEAELAEAEEELEE 383
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  694 LTVKLSSSEQELVKWRQQIADLESRpsskLTQDQKSLLLHREEITALMEKnvAIEKNNRLIKESAEIAAwRDSLQASIDN 773
Cdd:COG1196    384 LAEELLEALRAAAELAAQLEELEEA----EEALLERLERLEEELEELEEA--LAELEEEEEEEEEALEE-AAEEEAELEE 456
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  774 RQQGYDIQIAGYGVGDKNQQRQQELLRIEREYNNQRLQLERDYADKSRGMSNHVFQEKMQALNDALEREKEIVRQKNEQL 853
Cdd:COG1196    457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
                          330
                   ....*....|....*..
gi 1183594167  854 DIQAGDWVSGASQGFNN 870
Cdd:COG1196    537 EAALEAALAAALQNIVV 553
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
587-813 8.76e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.47  E-value: 8.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  587 KIAQDVLNSSINDYNKRQQEGI--ELRQRADAFSKQYQTREQQ-RASElAKLEKLKSQYS-------KEEYNNLIAQINE 656
Cdd:COG3206    148 ELAAAVANALAEAYLEQNLELRreEARKALEFLEEQLPELRKElEEAE-AALEEFRQKNGlvdlseeAKLLLQQLSELES 226
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  657 RYKDPKQPKAkgysddAAQRMIDHLNQQNALlSSQTELTVKLSSSEQELvkwRQQIADLESR---PSSKLTQDQKSLLLH 733
Cdd:COG3206    227 QLAEARAELA------EAEARLAALRAQLGS-GPDALPELLQSPVIQQL---RAQLAELEAElaeLSARYTPNHPDVIAL 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  734 REEITALmEKNVAIEKNNRLIKESAEIAAWRdSLQASIDNRQQGYDIQIAGYgvgdknQQRQQELLRIEREYNNQRLQLE 813
Cdd:COG3206    297 RAQIAAL-RAQLQQEAQRILASLEAELEALQ-AREASLQAQLAQLEARLAEL------PELEAELRRLEREVEVARELYE 368
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
534-802 9.02e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.52  E-value: 9.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  534 SLDQKISDVLRQIDEIEKNTRPGVFGLGGIGDGGAQ--------NKRL--------ARLKQQLGVLQAEkIAQdvLNSSI 597
Cdd:TIGR02169  234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEieqlleelNKKIkdlgeeeqLRVKEKIGELEAE-IAS--LERSI 310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  598 NDYNKRQQEGIELRQRADAFSKQYQTR----EQQRASELAKLEKLKSQYS--KEEYNNLIAQINERYKDPKQPKAKgySD 671
Cdd:TIGR02169  311 AEKERELEDAEERLAKLEAEIDKLLAEieelEREIEEERKRRDKLTEEYAelKEELEDLRAELEEVDKEFAETRDE--LK 388
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  672 DAAQRMIDHLNQQNALLSSQTELTVKLSSSEQELVKWRQQIADLESRpsskltqdqkslllHREEITALMEKNVAIEKNN 751
Cdd:TIGR02169  389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK--------------INELEEEKEDKALEIKKQE 454
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1183594167  752 RLIKESAEIaawRDSLQASIDNRQQGYDIqiagygVGDKNQQRQQELLRIE 802
Cdd:TIGR02169  455 WKLEQLAAD---LSKYEQELYDLKEEYDR------VEKELSKLQRELAEAE 496
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
570-849 1.00e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 42.59  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  570 NKRLARLKQQLGVLQAE----KIAQDVLNSSINDY-NKRQqegiELRQRADAFSKQYQTREQQRASELAKLEKLKSQYS- 643
Cdd:COG1340      7 SSSLEELEEKIEELREEieelKEKRDELNEELKELaEKRD----ELNAQVKELREEAQELREKRDELNEKVKELKEERDe 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  644 -KEEYNNLIAQINERYKDPKQPKAKGYSDDAAQRMIDHL--NQQNALLSSQteltvklssSEQELVkwrQQIADLESRPS 720
Cdd:COG1340     83 lNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLewRQQTEVLSPE---------EEKELV---EKIKELEKELE 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  721 SKLTQDQKSLLLhREEITALMEKNVAIEKNNRLIKESAE--------IAAW---RDSLQASIDNRQQgydiqiagygvgd 789
Cdd:COG1340    151 KAKKALEKNEKL-KELRAELKELRKEAEEIHKKIKELAEeaqelheeMIELykeADELRKEADELHK------------- 216
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  790 KNQQRQQELLRIEREYNNQRLQLeRDYADKSRGMSNHVFQEKMQALNDALEREKEIVRQK 849
Cdd:COG1340    217 EIVEAQEKADELHEEIIELQKEL-RELRKELKKLRKKQRALKREKEKEELEEKAEEIFEK 275
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
49-269 2.39e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.93  E-value: 2.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167   49 TEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKffDKGLID-KEEYEFLVRKLNETTEELSgVAQAQREAEKAgKLAAA 127
Cdd:COG3206    170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQ--KNGLVDlSEEAKLLLQQLSELESQLA-EARAELAEAEA-RLAAL 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  128 QQESQAQAFQRMLDKIDPLVAALRN----LEQQQDELNAAFASgkiNGSQFENYSRKIQETRRELTGE-------AQAER 196
Cdd:COG3206    246 RAQLGSGPDALPELLQSPVIQQLRAqlaeLEAELAELSARYTP---NHPDVIALRAQIAALRAQLQQEaqrilasLEAEL 322
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1183594167  197 EAAKAhdeQVAALQRLIAQLDpvgTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLS 269
Cdd:COG3206    323 EALQA---REASLQAQLAQLE---ARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVR 389
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
91-687 2.93e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167   91 KEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQESQAQAFQrmlDKIDPLVAALRNLEQQQDELNAAFASGK-- 168
Cdd:TIGR02168  332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE---EQLETLRSKVAQLELQIASLNNEIERLEar 408
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  169 --------------INGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVAALQRLIAQLDpvgTAFNRLVEQQKQLN 234
Cdd:TIGR02168  409 lerledrrerlqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE---EAEQALDAAERELA 485
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  235 EAKAKGMLSPEMYEELSGKLRAMRselEVTQSQLSKTGM---------------SAKQTAfamrmLPAQMTDIVV-GL-- 296
Cdd:TIGR02168  486 QLQARLDSLERLQENLEGFSEGVK---ALLKNQSGLSGIlgvlselisvdegyeAAIEAA-----LGGRLQAVVVeNLna 557
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  297 -----------STGQSPFMVLMQQGGQ---------LKDMFGGIG---------PAIKGVGSYVLGLINPFTLAAAAVGV 347
Cdd:TIGR02168  558 akkaiaflkqnELGRVTFLPLDSIKGTeiqgndreiLKNIEGFLGvakdlvkfdPKLRKALSYLLGGVLVVDDLDNALEL 637
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  348 LGLAYYKG---SQEQDEFNKSLILTGNQLGTTSGQLA----------DIAQRAGNAADSTTgAAAAVLNQLvrsgkvasS 414
Cdd:TIGR02168  638 AKKLRPGYrivTLDGDLVRPGGVITGGSAKTNSSILErrreieeleeKIEELEEKIAELEK-ALAELRKEL--------E 708
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  415 SLEQVTTAIVKMSEVTGISTEQLVNDFnEIAKDPVSAISKLNDQYHFLTIATYNQIKALQDEGNQQEAARIATEAYSSSM 494
Cdd:TIGR02168  709 ELEEELEQLRKELEELSRQISALRKDL-ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  495 IQRTNQIKENLGYLETAWKAVADSAKWAWDSMLDIG-REASLDQKISDVLRQIDEIEKNTRpgVFGLGGIGDGGAQNK-- 571
Cdd:TIGR02168  788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLReRLESLERRIAATERRLEDLEEQIE--ELSEDIESLAAEIEEle 865
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  572 -RLARLKQQLGVLQAEKIAQDVLNSSIND-YNKRQQEGIELRQRADAFSKQYQTREQQRASELAKLEKLKSQyskeeYNN 649
Cdd:TIGR02168  866 eLIEELESELEALLNERASLEEALALLRSeLEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR-----IDN 940
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....
gi 1183594167  650 LIAQINERYKD------PKQPKAKGYSDDAAQRMIDHLNQQNAL 687
Cdd:TIGR02168  941 LQERLSEEYSLtleeaeALENKIEDDEEEARRRLKRLENKIKEL 984
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
568-762 5.66e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 5.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  568 AQNKRLARLKQQLGVLQAE-KIAQDVLNSSINDYNKRQQEGIELRQRADAFSKQYQTREQQRASELAKLEKLKSQYS--- 643
Cdd:COG4942     17 AQADAAAEAEAELEQLQQEiAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAelr 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  644 ---KEEYNNLIAQINERYKDPKQPKAK------------------GYSDDAAQRMIDHLNQQ----NALLSSQTELTVKL 698
Cdd:COG4942     97 aelEAQKEELAELLRALYRLGRQPPLAlllspedfldavrrlqylKYLAPARREQAEELRADlaelAALRAELEAERAEL 176
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1183594167  699 SSSEQELVKWRQQIADLESRPSSKLTQDQKSLLLHREEITALMEKNVAIEKN-NRLIKESAEIAA 762
Cdd:COG4942    177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALiARLEAEAAAAAE 241
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
497-857 7.79e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 40.59  E-value: 7.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  497 RTNQIKENLGYLETAWKAVADSAKwawdsmldiGREASLDQKISDVLRQIDEIEknTRPGVFGLGGIGDGGAQNKRL--- 573
Cdd:pfam12128  284 TSAELNQLLRTLDDQWKEKRDELN---------GELSAADAAVAKDRSELEALE--DQHGAFLDADIETAAADQEQLpsw 352
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  574 --------ARLKQQLGVLQAEKIAQDVLNSSINDYNKRQQEGIELRQradafSKQYQTREQQRASELAKLEKLKSQYsKE 645
Cdd:pfam12128  353 qselenleERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKL-----AKIREARDRQLAVAEDDLQALESEL-RE 426
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  646 EYNNLIAQINE---RYK---------------DPKQPKAKGYSDDAAQRMIDHLNQQNA-LLSSQTELTVKLSSSEQELV 706
Cdd:pfam12128  427 QLEAGKLEFNEeeyRLKsrlgelklrlnqataTPELLLQLENFDERIERAREEQEAANAeVERLQSELRQARKRRDQASE 506
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  707 KWRQQIADLESRPS--------------------SKLTQDQK--------SLLLHREEITALMEKNVAIEKNN----RLI 754
Cdd:pfam12128  507 ALRQASRRLEERQSaldelelqlfpqagtllhflRKEAPDWEqsigkvisPELLHRTDLDPEVWDGSVGGELNlygvKLD 586
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183594167  755 KESAEIAAWRDS---LQASIDNRQQGYDIQiagygvGDKNQQRQQELLRIEREYNNQRLQLER-----DYADKSRGMSNH 826
Cdd:pfam12128  587 LKRIDVPEWAASeeeLRERLDKAEEALQSA------REKQAAAEEQLVQANGELEKASREETFartalKNARLDLRRLFD 660
                          410       420       430
                   ....*....|....*....|....*....|.
gi 1183594167  827 VFQEKMQALNDALEREKEIVRQKNEQLDIQA 857
Cdd:pfam12128  661 EKQSEKDKKNKALAERKDSANERLNSLEAQL 691
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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