NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1231751510|emb|SNV92030|]
View 

Uncharacterised protein [Mycolicibacter terrae]

Protein Classification

nuclear transport factor 2-like protein( domain architecture ID 1904797)

nuclear transport factor 2 (NTF2)-like protein such as the isomerase NsrQ from Aspergillus novofumigatus, a key enzyme in the biosynthesis of fungal tetrahydroxanthones, or the Streptomyces [4+2] and [4+6] Cyclase StmD

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
WI12 super family cl42057
Wound-induced protein WI12; This family consists of several plant wound-induced protein ...
 13-147 4.05e-04

Wound-induced protein WI12; This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum. Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development. This family seems partly related to the NTF2-like superfamily.


The actual alignment was detected with superfamily member COG3631:

Pssm-ID: 477929  Cd Length: 126  Bit Score: 38.75  E-value: 4.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231751510  13 EEWVERWLqanrDAEAAGDWRPLADFYADDATYGWNIGPKEDVMcVGIDEIREIALGLeMAGLDNWQYPYQKVLIDDKQG 92
Cdd:COG3631     3 RELVRRFY----AAFNAGDVDALLALLAEDVVWEDPGGPGAGTY-RGKEAVRAFFARL-AAAFEDLRFEVRRVVADGDRV 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1231751510  93 EIVGFWKQVATdADGAESEIYGIggSWFRLteKDGRplIEWQRDFFDFGHVQKLY 147
Cdd:COG3631    77 VVEGTVRGTVL-ATGKPYENRYA--DVFTV--RDGK--IVRVREYFDTAALAAAL 124
 
Name Accession Description Interval E-value
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
13-147 4.05e-04

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 38.75  E-value: 4.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231751510  13 EEWVERWLqanrDAEAAGDWRPLADFYADDATYGWNIGPKEDVMcVGIDEIREIALGLeMAGLDNWQYPYQKVLIDDKQG 92
Cdd:COG3631     3 RELVRRFY----AAFNAGDVDALLALLAEDVVWEDPGGPGAGTY-RGKEAVRAFFARL-AAAFEDLRFEVRRVVADGDRV 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1231751510  93 EIVGFWKQVATdADGAESEIYGIggSWFRLteKDGRplIEWQRDFFDFGHVQKLY 147
Cdd:COG3631    77 VVEGTVRGTVL-ATGKPYENRYA--DVFTV--RDGK--IVRVREYFDTAALAAAL 124
SnoaL_2 pfam12680
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 16-128 8.43e-03

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 432716 [Multi-domain]  Cd Length: 100  Bit Score: 34.57  E-value: 8.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231751510  16 VERWLqanrDAEAAGDWRPLADFYADDATYGWNIGPkedvmCVGIDEIREIALGLeMAGLDNWQYPYQKVLIDDkqGEIV 95
Cdd:pfam12680   1 VRRFY----EALNAGDLDALAALFAPDAVFHDPGGP-----LRGRDAIRAFFAAL-FAAFPDLRFEIHDVIADG--DRVA 68

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1231751510  96 GFWKQVAT-DADGAESEIYGIggSWFRLteKDGR 128
Cdd:pfam12680  69 VRWTVTGTiPPTGRGVRVRGV--DVFRF--RDGK 98
 
Name Accession Description Interval E-value
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
13-147 4.05e-04

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 38.75  E-value: 4.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231751510  13 EEWVERWLqanrDAEAAGDWRPLADFYADDATYGWNIGPKEDVMcVGIDEIREIALGLeMAGLDNWQYPYQKVLIDDKQG 92
Cdd:COG3631     3 RELVRRFY----AAFNAGDVDALLALLAEDVVWEDPGGPGAGTY-RGKEAVRAFFARL-AAAFEDLRFEVRRVVADGDRV 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1231751510  93 EIVGFWKQVATdADGAESEIYGIggSWFRLteKDGRplIEWQRDFFDFGHVQKLY 147
Cdd:COG3631    77 VVEGTVRGTVL-ATGKPYENRYA--DVFTV--RDGK--IVRVREYFDTAALAAAL 124
YybH COG4319
Ketosteroid isomerase homolog YybH [General function prediction only];
8-131 8.73e-04

Ketosteroid isomerase homolog YybH [General function prediction only];


Pssm-ID: 443460 [Multi-domain]  Cd Length: 131  Bit Score: 37.81  E-value: 8.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231751510   8 PRELYEEWVERWlqANRDAEAagdwrpLADFYADDATYGWNIGPkedvMCVGIDEIRE-IALGLEMAGLDNWQYPYQKVL 86
Cdd:COG4319    11 IRALLAAFAEAF--NAGDADA------LAALYAEDAVFFDPGGP----PVRGREAIRAaWAAAFAAGPRVTFEVEDVRVL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1231751510  87 IDDKQGEIVGFWKQVATDADGAESEIYGIGGSWFRLTEkDGRPLI 131
Cdd:COG4319    79 VSGDVAVVTGRWRLTGTDPDGEPVELAGRYTLVFRKQA-DGRWKI 122
SnoaL_2 pfam12680
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 16-128 8.43e-03

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 432716 [Multi-domain]  Cd Length: 100  Bit Score: 34.57  E-value: 8.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231751510  16 VERWLqanrDAEAAGDWRPLADFYADDATYGWNIGPkedvmCVGIDEIREIALGLeMAGLDNWQYPYQKVLIDDkqGEIV 95
Cdd:pfam12680   1 VRRFY----EALNAGDLDALAALFAPDAVFHDPGGP-----LRGRDAIRAFFAAL-FAAFPDLRFEIHDVIADG--DRVA 68

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1231751510  96 GFWKQVAT-DADGAESEIYGIggSWFRLteKDGR 128
Cdd:pfam12680  69 VRWTVTGTiPPTGRGVRVRGV--DVFRF--RDGK 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH