|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
90-507 |
1.20e-63 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 216.98 E-value: 1.20e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 90 RILNY-FSVARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC-ILSMSDVSETSfyphREQDARLSp 167
Cdd:COG2804 181 RLVNAiLEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIkIMANLDIAERR----LPQDGRIK- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 168 ammRKIGlfGARYSHR----PTGDGLIAVMRLIpDDGNNVPDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTT 243
Cdd:COG2804 256 ---LRLG--GREIDLRvstlPTVYGEKVVLRIL-DKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTT 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 244 LRTACRvYLDTnPGQHLLTIEDPLEGQVVGAVQTPIicdksDEEAvhiawG----KAISSALRLDPDSIMMQEMRDLISM 319
Cdd:COG2804 330 LYAALN-ELNT-PERNIITVEDPVEYQLPGINQVQV-----NPKI-----GltfaSALRSILRQDPDVIMVGEIRDLETA 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 320 LATIYAAQTGHLVMTTLHTNSALGIPERMVTLGINENLLCDAqlLIGLISQRLVPTLCPECRISWQdkvasLTLEEKDWL 399
Cdd:COG2804 398 EIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASS--LLGVLAQRLVRRLCPHCKEPYE-----PDPEELERL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 400 E-KYCNIEGicstdkLYFHNPEGCEACTqvveingqvrgkvGQGIRGRTVIAEVIETNNRLFKLLKTDG-----KVAARQ 473
Cdd:COG2804 471 GlPPEELAP------LTFYRGVGCEHCN-------------GTGYKGRTGIYELLVIDDELRELIAEGAsaaelREAARK 531
|
410 420 430
....*....|....*....|....*....|....
gi 1434500962 474 ywiNHMqgISRVRHVLHKINEGLVDPLMANRIIP 507
Cdd:COG2804 532 ---EGM--RTLREDGLEKVLQGITTLEEVLRVTG 560
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
217-373 |
1.87e-55 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 183.07 E-value: 1.87e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 217 KLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRVYLDtnPGQHLLTIEDPLEGQVVGAVQTPIICDKSdeeavhIAWGKA 296
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNG--PERNIITIEDPVEYQIPGINQSQVNEKIG------LTFADA 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1434500962 297 ISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLHTNSALGIPERMVTLGINENLLCDAqlLIGLISQRLV 373
Cdd:cd01129 73 LRAILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASA--LRGVIAQRLV 147
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
98-376 |
1.39e-53 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 182.10 E-value: 1.39e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 98 ARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATcILSMS--DVSEtsfypHRE-QDARLSPAMMRKIG 174
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISR-IKVMArlDISE-----RRPpQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 175 LFgaRYSHRPTGDGLIAVMRLIPDDGNNVpDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRvYLDT 254
Cdd:pfam00437 81 RV--RVSTLPTAGGEKLVIRLLDPSNVAL-SLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALG-ELNT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 255 nPGQHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMT 334
Cdd:pfam00437 157 -RDENIVTVEDPVEIQLEGINQVQL------NARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLS 229
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1434500962 335 TLHTNSALGIPERMVTLGINENLLcdAQLLIGLISQRLVPTL 376
Cdd:pfam00437 230 TLHTNSAAGALTRLQDMGVPPFEL--ASSLLLVIAQRLVRKL 269
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
98-451 |
2.54e-47 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 171.41 E-value: 2.54e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 98 ARKLGSSDIHFLISDSLFQVKMRVHGYLH-VVDERQREEGMSLCATCILSMSDVSETSFyphrEQDARLSPAMM-RKIGL 175
Cdd:TIGR02533 119 AVKERASDIHIEPFEKALVVRFRVDGVLRdVLSPPKKLHAALVSRVKIMAKLNIAEKRL----PQDGRISLRVGgRDIDI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 176 fgaRYSHRPTGDGLIAVMRLIpDDGNNVPDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRVyLDTn 255
Cdd:TIGR02533 195 ---RVSTVPTSHGERVVMRLL-DKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR-LNT- 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 256 PGQHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTT 335
Cdd:TIGR02533 269 PERNILTVEDPVEYQIEGIGQIQV------NPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLST 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 336 LHTNSALGIPERMVTLGINENLLcdAQLLIGLISQRLVPTLCPECRISWQDkvaslTLEEKDWLekycnieGICSTDKLY 415
Cdd:TIGR02533 343 LHTNDAAGAVTRLIDMGVEPFLL--ASSLLGVLAQRLVRRLCPHCKEPYEA-----TPEEIALF-------GISPEGPIN 408
|
330 340 350
....*....|....*....|....*....|....*.
gi 1434500962 416 FHNPEGCEACTqvveingqvrgkvGQGIRGRTVIAE 451
Cdd:TIGR02533 409 LYRPVGCPHCN-------------HTGYLGRTGIYE 431
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
89-375 |
5.44e-43 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 153.76 E-value: 5.44e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 89 QRILNYfsvARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC--ILSMsDVSET------SF---YP 157
Cdd:NF041000 1 EELIEE---AIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFkfLAGM-DIGEKrrpqsgAFtyeLN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 158 HREQDARLSpammrKIGLFGARYShrptgdgliAVMRLIPDDGNNVPDFlqlgYLPEQIKLLIRMIDRPEGKIILSGPTG 237
Cdd:NF041000 77 EQQISLRLS-----TVGDFLGRES---------LVIRLLYQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 238 SGKSTTLRTACRvylDTNPGQHLLTIEDPLEGQVVGAVQTPIicdksDEEAvHIAWGKAISSALRLDPDSIMMQEMRDli 317
Cdd:NF041000 139 SGKTTTMYSLAR---KLALNKQVITIEDPVEIKEPNFLQLQV-----NEKA-GMTYDTLLKAALRHRPDILIIGEIRD-- 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 318 SMLA--TIYAAQTGHLVMTTLHTNSALGIPERMVTLGINENLLcdAQLLIGLISQRLVPT 375
Cdd:NF041000 208 AETAkaAIRAALTGHLVLSTVHAKSAAGVIYRLLELGISKEEL--EQTLIGISYQRLIPT 265
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
104-459 |
1.50e-38 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 146.61 E-value: 1.50e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 104 SDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC-ILSMSDVSEtsfypHR-EQDARLSpammrkIGLFGARYS 181
Cdd:PRK10436 101 SDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLkVLGNLDIAE-----RRlPQDGQFT------VELAGNAYS 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 182 HR----PTGDGLIAVMRLIPDDGNNVpDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRvYLDTnPG 257
Cdd:PRK10436 170 FRiatlPCRGGEKVVLRLLQQVQQAL-DLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQ-TLNT-AQ 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 258 QHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLH 337
Cdd:PRK10436 247 INICSVEDPVEIPLAGINQTQI------HPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLH 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 338 TNSALGIPERMVTLGINENLLCDAQLLIglISQRLVPTLCPECRiswQDKVASLTLEEKDW---LEKYcniegicstdkl 414
Cdd:PRK10436 321 TNSTSETLVRLQQMGIARWMLASALKLV--IAQRLVRKLCPHCR---QQASEPIHLPPNIWpgpLPHW------------ 383
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1434500962 415 yfhNPEGCEACTqvveingqvrgkvgQGIRGRTVIAEVIETNNRL 459
Cdd:PRK10436 384 ---QAVGCEHCY--------------HGYYGRTALFEVLPITPVL 411
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
228-313 |
8.45e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 8.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 228 GKIILSGPTGSGKSTTLRTACRVYLDTNPGQHLLTIEDPLEGQVVGAVQTPIICDKSDEEAVHIAwGKAISSALRLDPDS 307
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRL-RLALALARKLKPDV 81
|
....*.
gi 1434500962 308 IMMQEM 313
Cdd:smart00382 82 LILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
90-507 |
1.20e-63 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 216.98 E-value: 1.20e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 90 RILNY-FSVARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC-ILSMSDVSETSfyphREQDARLSp 167
Cdd:COG2804 181 RLVNAiLEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIkIMANLDIAERR----LPQDGRIK- 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 168 ammRKIGlfGARYSHR----PTGDGLIAVMRLIpDDGNNVPDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTT 243
Cdd:COG2804 256 ---LRLG--GREIDLRvstlPTVYGEKVVLRIL-DKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTT 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 244 LRTACRvYLDTnPGQHLLTIEDPLEGQVVGAVQTPIicdksDEEAvhiawG----KAISSALRLDPDSIMMQEMRDLISM 319
Cdd:COG2804 330 LYAALN-ELNT-PERNIITVEDPVEYQLPGINQVQV-----NPKI-----GltfaSALRSILRQDPDVIMVGEIRDLETA 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 320 LATIYAAQTGHLVMTTLHTNSALGIPERMVTLGINENLLCDAqlLIGLISQRLVPTLCPECRISWQdkvasLTLEEKDWL 399
Cdd:COG2804 398 EIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASS--LLGVLAQRLVRRLCPHCKEPYE-----PDPEELERL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 400 E-KYCNIEGicstdkLYFHNPEGCEACTqvveingqvrgkvGQGIRGRTVIAEVIETNNRLFKLLKTDG-----KVAARQ 473
Cdd:COG2804 471 GlPPEELAP------LTFYRGVGCEHCN-------------GTGYKGRTGIYELLVIDDELRELIAEGAsaaelREAARK 531
|
410 420 430
....*....|....*....|....*....|....
gi 1434500962 474 ywiNHMqgISRVRHVLHKINEGLVDPLMANRIIP 507
Cdd:COG2804 532 ---EGM--RTLREDGLEKVLQGITTLEEVLRVTG 560
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
217-373 |
1.87e-55 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 183.07 E-value: 1.87e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 217 KLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRVYLDtnPGQHLLTIEDPLEGQVVGAVQTPIICDKSdeeavhIAWGKA 296
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNG--PERNIITIEDPVEYQIPGINQSQVNEKIG------LTFADA 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1434500962 297 ISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLHTNSALGIPERMVTLGINENLLCDAqlLIGLISQRLV 373
Cdd:cd01129 73 LRAILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASA--LRGVIAQRLV 147
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
98-376 |
1.39e-53 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 182.10 E-value: 1.39e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 98 ARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATcILSMS--DVSEtsfypHRE-QDARLSPAMMRKIG 174
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISR-IKVMArlDISE-----RRPpQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 175 LFgaRYSHRPTGDGLIAVMRLIPDDGNNVpDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRvYLDT 254
Cdd:pfam00437 81 RV--RVSTLPTAGGEKLVIRLLDPSNVAL-SLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALG-ELNT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 255 nPGQHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMT 334
Cdd:pfam00437 157 -RDENIVTVEDPVEIQLEGINQVQL------NARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLS 229
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1434500962 335 TLHTNSALGIPERMVTLGINENLLcdAQLLIGLISQRLVPTL 376
Cdd:pfam00437 230 TLHTNSAAGALTRLQDMGVPPFEL--ASSLLLVIAQRLVRKL 269
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
98-451 |
2.54e-47 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 171.41 E-value: 2.54e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 98 ARKLGSSDIHFLISDSLFQVKMRVHGYLH-VVDERQREEGMSLCATCILSMSDVSETSFyphrEQDARLSPAMM-RKIGL 175
Cdd:TIGR02533 119 AVKERASDIHIEPFEKALVVRFRVDGVLRdVLSPPKKLHAALVSRVKIMAKLNIAEKRL----PQDGRISLRVGgRDIDI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 176 fgaRYSHRPTGDGLIAVMRLIpDDGNNVPDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRVyLDTn 255
Cdd:TIGR02533 195 ---RVSTVPTSHGERVVMRLL-DKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR-LNT- 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 256 PGQHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTT 335
Cdd:TIGR02533 269 PERNILTVEDPVEYQIEGIGQIQV------NPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLST 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 336 LHTNSALGIPERMVTLGINENLLcdAQLLIGLISQRLVPTLCPECRISWQDkvaslTLEEKDWLekycnieGICSTDKLY 415
Cdd:TIGR02533 343 LHTNDAAGAVTRLIDMGVEPFLL--ASSLLGVLAQRLVRRLCPHCKEPYEA-----TPEEIALF-------GISPEGPIN 408
|
330 340 350
....*....|....*....|....*....|....*.
gi 1434500962 416 FHNPEGCEACTqvveingqvrgkvGQGIRGRTVIAE 451
Cdd:TIGR02533 409 LYRPVGCPHCN-------------HTGYLGRTGIYE 431
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
98-496 |
3.68e-43 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 161.34 E-value: 3.68e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 98 ARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC-ILSMSDVSEtsfypHR-EQDARLspammrKIGL 175
Cdd:TIGR02538 192 AIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIkVMSRLDIAE-----KRiPQDGRI------KLKL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 176 FGA-----RYSHRPTGDGLIAVMRLIpDDGNNVPDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRV 250
Cdd:TIGR02538 261 SKSkaidfRVSTLPTLFGEKVVLRIL-DSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 251 yLDTnPGQHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGH 330
Cdd:TIGR02538 340 -LNT-EEVNISTAEDPVEINLPGINQVNV------NPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGH 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 331 LVMTTLHTNSALGIPERMVTLGINENLLCDAQLLIglISQRLVPTLCPECRIswQDKVASLTLEEkdwlekycniEGICS 410
Cdd:TIGR02538 412 LVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLI--MAQRLARRLCSHCKA--PEEVPAEALLE----------LGFTQ 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 411 TDKLYFH--NPEGCEACTqvveingqvrgkvGQGIRGRTVIAEVIETNNRLFKLLKTDGKVAARQYwINHMQGISRVRHV 488
Cdd:TIGR02538 478 EDLADLKlyGPVGCDECS-------------NTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAE-LAQKEGMRTLRRS 543
|
....*....
gi 1434500962 489 -LHKINEGL 496
Cdd:TIGR02538 544 gLLKVKQGV 552
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
89-375 |
5.44e-43 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 153.76 E-value: 5.44e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 89 QRILNYfsvARKLGSSDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC--ILSMsDVSET------SF---YP 157
Cdd:NF041000 1 EELIEE---AIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFkfLAGM-DIGEKrrpqsgAFtyeLN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 158 HREQDARLSpammrKIGLFGARYShrptgdgliAVMRLIPDDGNNVPDFlqlgYLPEQIKLLIRMIDRPEGKIILSGPTG 237
Cdd:NF041000 77 EQQISLRLS-----TVGDFLGRES---------LVIRLLYQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 238 SGKSTTLRTACRvylDTNPGQHLLTIEDPLEGQVVGAVQTPIicdksDEEAvHIAWGKAISSALRLDPDSIMMQEMRDli 317
Cdd:NF041000 139 SGKTTTMYSLAR---KLALNKQVITIEDPVEIKEPNFLQLQV-----NEKA-GMTYDTLLKAALRHRPDILIIGEIRD-- 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 318 SMLA--TIYAAQTGHLVMTTLHTNSALGIPERMVTLGINENLLcdAQLLIGLISQRLVPT 375
Cdd:NF041000 208 AETAkaAIRAALTGHLVLSTVHAKSAAGVIYRLLELGISKEEL--EQTLIGISYQRLIPT 265
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
98-375 |
1.04e-39 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 147.08 E-value: 1.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 98 ARKLGSSDIHFLISdslFQVKMRVHGYLhvvdERQREEGMS--LCATCILS-MSDVSETSFYPHREQDARLS-PAMMR-K 172
Cdd:TIGR01420 9 AVKLGASDIHLTAG---APPAMRIDGDL----VRIEFEPLTpeDTQKLAREiLSEKQREEFEENGELDFSFSlPGVGRfR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 173 IGLFGARyshrptgDGLIAVMRLIPddgNNVPDFLQLGyLPEqikLLIRMIDRPEGKIILSGPTGSGKSTTLrtACRV-Y 251
Cdd:TIGR01420 82 VNAFYQR-------GGVALVLRLIP---SKIPTFEELG-LPP---VLRELAERPRGLILVTGPTGSGKSTTL--ASMIdY 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 252 LDTNPGQHLLTIEDPLEgqVVGAVQTPIICDKsdEEAVH-IAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGH 330
Cdd:TIGR01420 146 INKNKAYHIITIEDPIE--YVHTNKRSLINQR--EVGEDtLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGH 221
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1434500962 331 LVMTTLHTNSALGIPERMVTL-GINENLLCDAQL---LIGLISQRLVPT 375
Cdd:TIGR01420 222 LVFGTLHTNSAAQTIERIIDVfPAEEQEQIRTQLaesLVAIISQRLLPK 270
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
104-459 |
1.50e-38 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 146.61 E-value: 1.50e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 104 SDIHFLISDSLFQVKMRVHGYLHVVDERQREEGMSLCATC-ILSMSDVSEtsfypHR-EQDARLSpammrkIGLFGARYS 181
Cdd:PRK10436 101 SDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLkVLGNLDIAE-----RRlPQDGQFT------VELAGNAYS 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 182 HR----PTGDGLIAVMRLIPDDGNNVpDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRvYLDTnPG 257
Cdd:PRK10436 170 FRiatlPCRGGEKVVLRLLQQVQQAL-DLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQ-TLNT-AQ 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 258 QHLLTIEDPLEGQVVGAVQTPIicdksdEEAVHIAWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLH 337
Cdd:PRK10436 247 INICSVEDPVEIPLAGINQTQI------HPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLH 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 338 TNSALGIPERMVTLGINENLLCDAQLLIglISQRLVPTLCPECRiswQDKVASLTLEEKDW---LEKYcniegicstdkl 414
Cdd:PRK10436 321 TNSTSETLVRLQQMGIARWMLASALKLV--IAQRLVRKLCPHCR---QQASEPIHLPPNIWpgpLPHW------------ 383
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1434500962 415 yfhNPEGCEACTqvveingqvrgkvgQGIRGRTVIAEVIETNNRL 459
Cdd:PRK10436 384 ---QAVGCEHCY--------------HGYYGRTALFEVLPITPVL 411
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
87-375 |
3.77e-36 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 137.14 E-value: 3.77e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 87 SEQRILNYFSVARKLGSSDIHfLISDSlfQVKMRVHGYLHVVDER--QREEGMSLCATCilsMSDVSETSFYPHREQDAR 164
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLH-LTVGS--PPMLRIDGELVPLDDPplTPEDLEALLKEI---LTEEQRERLEEEGELDFS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 165 LSpamMRKIGLFgaR---YSHRptgDGLIAVMRLIPDDgnnVPDFLQLGyLPEQIKlliRMIDRPEGKIILSGPTGSGKS 241
Cdd:COG2805 75 YS---LPGLGRF--RvniFRQR---GGVAAVLRLIPSE---IPTLEELG-LPPVLK---ELAELPRGLVLVTGPTGSGKS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 242 TTLrtACRV-YLDTNPGQHLLTIEDPLE-------GQV----VGavqtpiicdksdeeaVHIA-WGKAISSALRLDPDSI 308
Cdd:COG2805 140 TTL--AAMIdYINETRAKHIITIEDPIEfvhkhkkSLInqreVG---------------RDTPsFANALRAALREDPDVI 202
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1434500962 309 MMQEMRDLISMLATIYAAQTGHLVMTTLHTNSALGIPERMVTL-------GINENLlcdAQLLIGLISQRLVPT 375
Cdd:COG2805 203 LVGEMRDLETIEAALTAAETGHLVFATLHTNSAAQTIDRIIDVfppeeqaQIRSQL---AESLRGVISQRLLPR 273
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
203-382 |
2.23e-35 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 131.89 E-value: 2.23e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 203 VPDFLQLGyLPEQIKlliRMIDRPEGKIILSGPTGSGKSTTLrtACRV-YLDTNPGQHLLTIEDPLEgqvvgAVQTPIIC 281
Cdd:cd01131 1 IPTFEELG-LPPVLK---DLALKPRGLVLVTGPTGSGKSTTL--AAMIdYINETRSKHIITIEDPIE-----FVHKHKKS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 282 DKSDEEaVHI---AWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLHTNSALGIPERMVTL------- 351
Cdd:cd01131 70 LINQRE-VGRdteSFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVfppeqqe 148
|
170 180 190
....*....|....*....|....*....|.
gi 1434500962 352 GINENLlcdAQLLIGLISQRLVPTLCPECRI 382
Cdd:cd01131 149 QVRIQL---ASSLRGVISQRLLPKKDGGGRV 176
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
219-375 |
2.97e-27 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 107.85 E-value: 2.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 219 LIRMIDRPEGKIILSGPTGSGKSTTLRTACRVYLDTNPGQ-HLLTIEDPLEgQVVGAVQT--PIICdKSDEEAVHIAWGK 295
Cdd:cd19516 3 LVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENDPPDrKIITYEDPIE-FVYDGIKSkhSIIV-QSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 296 AISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLHTNSALGIPERMVTL-------GINENLLCDAQLligLI 368
Cdd:cd19516 81 AVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLfppeerdAAAYDLLSTLRF---II 157
|
....*..
gi 1434500962 369 SQRLVPT 375
Cdd:cd19516 158 VQRLVRT 164
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
191-375 |
7.13e-26 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 109.03 E-value: 7.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 191 AVMRLIPDDgnnVPDFLQLGyLPEQIKLLIrMIDRpeGKIILSGPTGSGKSTTLrtACRV-YLDTNPGQHLLTIEDPLE- 268
Cdd:COG5008 94 MVLRRIETE---IPTLDELG-LPPVLKDLI-MEKR--GLVLFVGATGSGKSTTL--AAMIdHRNENSSGHILTIEDPIEf 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 269 ---------GQ-VVGavqtpiicdkSDEEAvhiaWGKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLHT 338
Cdd:COG5008 165 vhkhkksivTQrEVG----------VDTES----YEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHA 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1434500962 339 NS---ALgipERMvtlgIN-------ENLLCDAQL-LIGLISQRLVPT 375
Cdd:COG5008 231 NNanqAL---DRI----INffpeerrPQLLMDLSLnLRAIVSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
193-375 |
2.65e-21 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 95.64 E-value: 2.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 193 MRLIPDDgnnVPDFLQLGYLPEQIKLLIRMidrpEGKIILSGPTGSGKSTTLRTACRVYLDTNPGQHLLTIEDPLE---- 268
Cdd:TIGR02525 122 LRVIPSD---IPDLKQMGIEPDLFNSLLPA----AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEyilg 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 269 --GQVVGAVQTPIicdKSDEEAVHiawgKAISSALRLDPDSIMMQEMRDLISMLATIYAAQTGHLVMTTLHTNSALGIPE 346
Cdd:TIGR02525 195 spDDLLPPAQSQI---GRDVDSFA----NGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAIS 267
|
170 180 190
....*....|....*....|....*....|...
gi 1434500962 347 RMVTLGINENLLCDAQLLIGLIS----QRLVPT 375
Cdd:TIGR02525 268 RCLQMYPPEMREAAAFDLLSILQyiivQRLLRT 300
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
230-370 |
2.32e-17 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 79.89 E-value: 2.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 230 IILSGPTGSGKSTTLRTACRVYldtNPGQHLLTIEDPLEGQVVGAVQTPIICDKSDEEAVHIAWGKAISSALRLDPDSIM 309
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFI---PPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEKGEVTMADLLKAALRMRPDRII 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1434500962 310 MQEMRD--LISMLAtiyAAQTGHL-VMTTLHTNSALGIPERMVTLGINENLLCDAQLLIGLISQ 370
Cdd:cd01130 92 VGEVRGgeAYDMLQ---AMNTGHPgSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIAS 152
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
221-376 |
7.60e-14 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 69.34 E-value: 7.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 221 RMIDRPeGKIILSGPTGSGKSTTLRTACRvylDTNPGQHLLTIEDPLE---GQVVGAVQTPIicdksdeeAVHIAWGKAI 297
Cdd:cd19477 5 DGIAIG-KNVIVCGGTGSGKTTYIKSILE---FIPKEERIISIEDTEEivfKHHKNYTQLFF--------GGNITSADCL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 298 SSALRLDPDSIMMQEMRDLISMLAtIYAAQTGH-LVMTTLHTNSALGIPERMVTLGINENLLCDAQ----------LLIG 366
Cdd:cd19477 73 KSCLRQRPDRIILGELRSSEAYDF-YNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSNSAARNIKfesliegfkdLIDG 151
|
170
....*....|
gi 1434500962 367 LISQRLVPTL 376
Cdd:cd19477 152 IVHINHHKQC 161
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
205-353 |
4.87e-11 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 64.42 E-value: 4.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 205 DFLQLGYLPEQI-KLLIRMIDRpeGK-IILSGPTGSGKSTTLRTACRvYLDtnPGQHLLTIEDPLEGQV----VGAVQT- 277
Cdd:COG4962 160 DLVALGSLTPEMaEFLRAAVRA--RLnILVSGGTGSGKTTLLNALSG-FIP--PDERIVTIEDAAELQLqhphVVRLETr 234
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1434500962 278 PiicdKSDEEAVHIAWGKAISSALRLDPDSIMMQEMRD--LISMLAtiyAAQTGHL-VMTTLHTNSALGIPERMVTLGI 353
Cdd:COG4962 235 P----PNVEGAGEVTLRDLVRNALRMRPDRIIVGEVRGaeALDMLQ---AMNTGHDgSMSTLHANSARDALARLETLAL 306
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
194-351 |
2.28e-08 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 55.96 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 194 RLIPDDgnnvpDFLQLGYLPEQIKLLIRMIDRPEGKIILSGPTGSGKSTTLRTACRVYLDTNPGQHLLTIEDPLEGQVvg 273
Cdd:PRK13833 116 RLIPLD-----DYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC-- 188
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1434500962 274 AVQTPIICDKSDeeAVHIAwgKAISSALRLDPDSIMMQEMRDLiSMLATIYAAQTGHL-VMTTLHTNSALGIPERMVTL 351
Cdd:PRK13833 189 AAENAVALHTSD--TVDMA--RLLKSTMRLRPDRIIVGEVRDG-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQL 262
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
230-354 |
4.37e-06 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 49.31 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 230 IILSGPTGSGKSTTLRtACRVYLdtNPGQHLLTIEDPLEgqvvgaVQTPiicdksdeeavHIAW------------GKAI 297
Cdd:COG0630 293 VLVAGGTASGKTTLLN-ALLSFI--PPDAKIVTIEDTRE------LNLP-----------HENWislvtresfggeEGDV 352
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1434500962 298 S------SALRLDPDSIMMQEMRD-----LISmlatiyAAQTGHLVMTTLHTNSALGIPERMVTLGIN 354
Cdd:COG0630 353 TmfdllkAALRQRPDYIVVGEVRGeeaytLFQ------AMATGHGVLSTFHADSVESAINRLTSPPIN 414
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
230-315 |
4.42e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 48.74 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 230 IILSGPTGSGKSTTLRTACRVyldTNPGQHLLTIEDPLEGQVVGAVQTPIICDKSDEEAVHIAWGKAISSALRLDPDSIM 309
Cdd:PRK13851 165 MLLCGPTGSGKTTMSKTLISA---IPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241
|
....*.
gi 1434500962 310 MQEMRD 315
Cdd:PRK13851 242 LGEMRD 247
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
228-313 |
8.45e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 8.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1434500962 228 GKIILSGPTGSGKSTTLRTACRVYLDTNPGQHLLTIEDPLEGQVVGAVQTPIICDKSDEEAVHIAwGKAISSALRLDPDS 307
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRL-RLALALARKLKPDV 81
|
....*.
gi 1434500962 308 IMMQEM 313
Cdd:smart00382 82 LILDEI 87
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
207-250 |
8.69e-03 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 38.07 E-value: 8.69e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1434500962 207 LQLGYLPEQIkLLIRMIDRPEGKII-LSGPTGSGKSTTLRTACRV 250
Cdd:PRK11231 8 LTVGYGTKRI-LNDLSLSLPTGKITaLIGPNGCGKSTLLKCFARL 51
|
|
| |
