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Conserved domains on  [gi|1439648446|emb|SUD70695|]
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protein BatD [Pseudomonas putida]

Protein Classification

BatD family protein( domain architecture ID 10612567)

BatD family protein similar to Bacteroides aerotolerance regulator BatD, which is involved in tolerance to oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 25-117 4.90e-15

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


:

Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 70.73  E-value: 4.90e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439648446  25 ASVDRTRLGAGETLELTLESQDVTQFGKPdlraLDGDFEVRGTRQLNSLHTLDGETRASTRWIITLLPRRSGSLRIPELQ 104
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKGNDKLL----PPPGFEVLSGSQSSSISIINGSGSSSTTYTYTLIPRKEGTFTIPPAT 76

                          90
                  ....*....|....*..
gi 1439648446 105 LG----QSHSQPIDLQV 117
Cdd:pfam13584  77 ISvggkTYKSNPITIKV 93
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 135-219 1.69e-04

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


:

Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 40.68  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439648446 135 ATLDSNEVYVQAQAVLTLRIYhsvslyDDSSLSPLQLENAKVEPLGDSRTYEKdINGVRHGVIETRYALYPQHSGTLEIA 214
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVD------GKGNDKLLPPPGFEVLSGSQSSSISI-INGSGSSSTTYTYTLIPRKEGTFTIP 73


                  ....*
gi 1439648446 215 PLTFT 219
Cdd:pfam13584  74 PATIS 78
 
Name Accession Description Interval E-value
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 25-117 4.90e-15

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 70.73  E-value: 4.90e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439648446  25 ASVDRTRLGAGETLELTLESQDVTQFGKPdlraLDGDFEVRGTRQLNSLHTLDGETRASTRWIITLLPRRSGSLRIPELQ 104
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKGNDKLL----PPPGFEVLSGSQSSSISIINGSGSSSTTYTYTLIPRKEGTFTIPPAT 76

                          90
                  ....*....|....*..
gi 1439648446 105 LG----QSHSQPIDLQV 117
Cdd:pfam13584  77 ISvggkTYKSNPITIKV 93
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 135-219 1.69e-04

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 40.68  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439648446 135 ATLDSNEVYVQAQAVLTLRIYhsvslyDDSSLSPLQLENAKVEPLGDSRTYEKdINGVRHGVIETRYALYPQHSGTLEIA 214
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVD------GKGNDKLLPPPGFEVLSGSQSSSISI-INGSGSSSTTYTYTLIPRKEGTFTIP 73


                  ....*
gi 1439648446 215 PLTFT 219
Cdd:pfam13584  74 PATIS 78
 
Name Accession Description Interval E-value
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 25-117 4.90e-15

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 70.73  E-value: 4.90e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439648446  25 ASVDRTRLGAGETLELTLESQDVTQFGKPdlraLDGDFEVRGTRQLNSLHTLDGETRASTRWIITLLPRRSGSLRIPELQ 104
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVDGKGNDKLL----PPPGFEVLSGSQSSSISIINGSGSSSTTYTYTLIPRKEGTFTIPPAT 76

                          90
                  ....*....|....*..
gi 1439648446 105 LG----QSHSQPIDLQV 117
Cdd:pfam13584  77 ISvggkTYKSNPITIKV 93
BatD pfam13584
BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies ...
 135-219 1.69e-04

BatD DUF11 like domain; This domain that probably has an Ig-like fold is found in three copies in BatD proteins that are involved in tolerance to oxygen in in Bacteroides spp.


Pssm-ID: 463927 [Multi-domain]  Cd Length: 93  Bit Score: 40.68  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439648446 135 ATLDSNEVYVQAQAVLTLRIYhsvslyDDSSLSPLQLENAKVEPLGDSRTYEKdINGVRHGVIETRYALYPQHSGTLEIA 214
Cdd:pfam13584   1 ASVDPTEVKVGESFRLTFTVD------GKGNDKLLPPPGFEVLSGSQSSSISI-INGSGSSSTTYTYTLIPRKEGTFTIP 73


                  ....*
gi 1439648446 215 PLTFT 219
Cdd:pfam13584  74 PATIS 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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