|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08156 |
PRK08156 |
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; |
1-368 |
4.90e-166 |
|
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 236168 Cd Length: 361 Bit Score: 467.95 E-value: 4.90e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAAGIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIRSYLKM 80
Cdd:PRK08156 1 MANKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGSFSEFMSIYKRILADNFDINIGDYFLAVMIIFLKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 81 VMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQNHRDLF 160
Cdd:PRK08156 81 LIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFWKNYKKEIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 161 QVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRETHSELL 240
Cdd:PRK08156 161 SQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 241 SEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSRRYQFV 320
Cdd:PRK08156 241 SEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1440290787 321 SGEDLEPVMRVLWWLRQVEMAnsgarahtdgGEDFPLPEVNNKKEEHD 368
Cdd:PRK08156 321 SLEDLDEVLRLLIWLEQVENA----------GMGVPQPQENEVRSAEP 358
|
|
| FlhB_rel_III |
TIGR01404 |
type III secretion protein, YscU/HrpY family; This model represents one of several families of ... |
4-338 |
1.16e-115 |
|
type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 130471 Cd Length: 342 Bit Score: 339.64 E-value: 1.16e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 4 KTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAAGIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIRS-YLKMVM 82
Cdd:TIGR01404 3 KTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLILPLDFDDQPFAYALAQVLSgLLQLIL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 83 PFIVVC----AVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQNHRD 158
Cdd:TIGR01404 83 TVLLPLlaivLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYLKE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 159 LFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRETHSE 238
Cdd:TIGR01404 163 LFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 239 LLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSRRYQ 318
Cdd:TIGR01404 243 ILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTARVGQ 322
|
330 340
....*....|....*....|
gi 1440290787 319 FVSGEDLEPVMRVLWWLRQV 338
Cdd:TIGR01404 323 YIPEELFEAVAELLRWLEQV 342
|
|
| FlhB |
COG1377 |
Flagellar biosynthesis protein FlhB [Cell motility]; |
1-339 |
1.19e-98 |
|
Flagellar biosynthesis protein FlhB [Cell motility];
Pssm-ID: 440987 Cd Length: 352 Bit Score: 296.64 E-value: 1.19e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLA-----AGIVVDLRHVIAE-FSHVAAAGA-DQDAASYGLEW 73
Cdd:COG1377 6 DGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLllflgPSLAERLGELLRSlLSFARALALdPADLLALLGAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 74 IRSYLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVE 153
Cdd:COG1377 86 LLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVAYLVLR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 154 QNHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRR 233
Cdd:COG1377 166 GELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEVKGRIR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 234 ETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRH 313
Cdd:COG1377 246 QLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALYAT 325
|
330 340
....*....|....*....|....*.
gi 1440290787 314 SRRYQFVSGEDLEPVMRVLWWLRQVE 339
Cdd:COG1377 326 VEVGQEIPEELYQAVAEVLAYVYQLK 351
|
|
| Bac_export_2 |
pfam01312 |
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ... |
3-335 |
2.94e-98 |
|
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157 Cd Length: 338 Bit Score: 295.12 E-value: 2.94e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 3 SKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAA-----GIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIRSY 77
Cdd:pfam01312 1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALlflgpFLLERLAELFRSVLSFDRAADPAALLALLLALLLEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 78 LKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQNHR 157
Cdd:pfam01312 81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 158 DLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRETHS 237
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 238 ELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSRRY 317
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320
|
330
....*....|....*...
gi 1440290787 318 QFVSGEDLEPVMRVLWWL 335
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08156 |
PRK08156 |
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; |
1-368 |
4.90e-166 |
|
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 236168 Cd Length: 361 Bit Score: 467.95 E-value: 4.90e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAAGIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIRSYLKM 80
Cdd:PRK08156 1 MANKTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGSFSEFMSIYKRILADNFDINIGDYFLAVMIIFLKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 81 VMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQNHRDLF 160
Cdd:PRK08156 81 LIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFWKNYKKEIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 161 QVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRETHSELL 240
Cdd:PRK08156 161 SQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 241 SEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSRRYQFV 320
Cdd:PRK08156 241 SEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1440290787 321 SGEDLEPVMRVLWWLRQVEMAnsgarahtdgGEDFPLPEVNNKKEEHD 368
Cdd:PRK08156 321 SLEDLDEVLRLLIWLEQVENA----------GMGVPQPQENEVRSAEP 358
|
|
| FlhB_rel_III |
TIGR01404 |
type III secretion protein, YscU/HrpY family; This model represents one of several families of ... |
4-338 |
1.16e-115 |
|
type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 130471 Cd Length: 342 Bit Score: 339.64 E-value: 1.16e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 4 KTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAAGIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIRS-YLKMVM 82
Cdd:TIGR01404 3 KTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLILPLDFDDQPFAYALAQVLSgLLQLIL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 83 PFIVVC----AVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQNHRD 158
Cdd:TIGR01404 83 TVLLPLlaivLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKNYLKE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 159 LFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRETHSE 238
Cdd:TIGR01404 163 LFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 239 LLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSRRYQ 318
Cdd:TIGR01404 243 ILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTARVGQ 322
|
330 340
....*....|....*....|
gi 1440290787 319 FVSGEDLEPVMRVLWWLRQV 338
Cdd:TIGR01404 323 YIPEELFEAVAELLRWLEQV 342
|
|
| FlhB |
COG1377 |
Flagellar biosynthesis protein FlhB [Cell motility]; |
1-339 |
1.19e-98 |
|
Flagellar biosynthesis protein FlhB [Cell motility];
Pssm-ID: 440987 Cd Length: 352 Bit Score: 296.64 E-value: 1.19e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLA-----AGIVVDLRHVIAE-FSHVAAAGA-DQDAASYGLEW 73
Cdd:COG1377 6 DGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLllflgPSLAERLGELLRSlLSFARALALdPADLLALLGAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 74 IRSYLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVE 153
Cdd:COG1377 86 LLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVAYLVLR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 154 QNHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRR 233
Cdd:COG1377 166 GELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEVKGRIR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 234 ETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRH 313
Cdd:COG1377 246 QLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALYAT 325
|
330 340
....*....|....*....|....*.
gi 1440290787 314 SRRYQFVSGEDLEPVMRVLWWLRQVE 339
Cdd:COG1377 326 VEVGQEIPEELYQAVAEVLAYVYQLK 351
|
|
| Bac_export_2 |
pfam01312 |
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ... |
3-335 |
2.94e-98 |
|
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157 Cd Length: 338 Bit Score: 295.12 E-value: 2.94e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 3 SKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAA-----GIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIRSY 77
Cdd:pfam01312 1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALlflgpFLLERLAELFRSVLSFDRAADPAALLALLLALLLEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 78 LKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQNHR 157
Cdd:pfam01312 81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 158 DLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRETHS 237
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 238 ELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSRRY 317
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320
|
330
....*....|....*...
gi 1440290787 318 QFVSGEDLEPVMRVLWWL 335
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
|
|
| EscU |
COG4792 |
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ... |
1-338 |
5.24e-75 |
|
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443821 Cd Length: 344 Bit Score: 235.56 E-value: 5.24e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGV-------------LAAGIVVDLRHVIAEFSHVAAAGADQDaa 67
Cdd:COG4792 2 SSEKTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLgylllegdalvehLQALILLPAQLLNLPFDEALNQLLGAL-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 68 syGLEWIRsylkMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAA 147
Cdd:COG4792 80 --LELLLR----LVLPLLAVLILATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 148 ISIFVEQNHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPE 227
Cdd:COG4792 154 FYYLLRGYLPTLVYLPYCGLACAGPVVGALLKWLWGVLLGAYLVFGLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 228 TKMKRRETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLA 307
Cdd:COG4792 234 IKQKRRRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLA 313
|
330 340 350
....*....|....*....|....*....|.
gi 1440290787 308 RSVYRHSRRYQFVSGEDLEPVMRVLWWLRQV 338
Cdd:COG4792 314 RALYADAGLGEYIPEDLFEPVAEVLRLALLL 344
|
|
| flhB |
PRK05702 |
flagellar type III secretion system protein FlhB; |
2-314 |
3.27e-68 |
|
flagellar type III secretion system protein FlhB;
Pssm-ID: 235569 Cd Length: 359 Bit Score: 218.48 E-value: 3.27e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 2 PSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGV---------LAAGIVVDLRHVIaEFSHvAAAGADQDAASYGLE 72
Cdd:PRK05702 7 DEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLvvlwffgpsLARRLSGMLRALF-SFDR-EIIFDPNDVLSLFLL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 73 WIRSYLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFV 152
Cdd:PRK05702 85 LLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFVL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 153 EQNHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKR 232
Cdd:PRK05702 165 WSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRI 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 233 RETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAvIRH-AEANGVPVVRDVPLARSVY 311
Cdd:PRK05702 245 RQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALK-IREiAREHNVPIVENPPLARALY 323
|
...
gi 1440290787 312 RHS 314
Cdd:PRK05702 324 ATV 326
|
|
| PRK12721 |
PRK12721 |
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; |
1-343 |
1.72e-61 |
|
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 183700 Cd Length: 349 Bit Score: 201.05 E-value: 1.72e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVL-----AAGIVVDLRHVIAEFSHVAAAGADQDAASYGLEWIR 75
Cdd:PRK12721 1 MSEKTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLyflleGPSLVEAIIGLINSTIQLLNKPFLYALTQILGAVLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 76 SYLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVeqn 155
Cdd:PRK12721 81 VLLRFLLVLGAGLIVATVGTGIAQVGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLL--- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 156 hRDLFQVFRASPEALAHEWIRLTVKFVM----VLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMK 231
Cdd:PRK12721 158 -HYYAPSFAYLPYCGAACGLPVVSTLIFwlwgGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 232 RRETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVY 311
Cdd:PRK12721 237 RRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALF 316
|
330 340 350
....*....|....*....|....*....|..
gi 1440290787 312 RHSRRYQFVSGEDLEPVMRVLWWLRQVEMANS 343
Cdd:PRK12721 317 KEVECGDYIPETLFEPVAALLRMVMDIDYQHS 348
|
|
| PRK06298 |
PRK06298 |
type III secretion system protein; Validated |
1-342 |
1.32e-45 |
|
type III secretion system protein; Validated
Pssm-ID: 180519 Cd Length: 356 Bit Score: 159.63 E-value: 1.32e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 1 MPSKTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGV-LAAGIVVDLRH-----VIAEFSHVAAAGADQDAASYGLEWI 74
Cdd:PRK06298 1 MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMfLTFSLSSFFAKhlgsfLVSIFKTAPTNHDPVVTVYYLKNCL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 75 RSYLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQ 154
Cdd:PRK06298 81 ILILTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLKN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 155 NHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRE 234
Cdd:PRK06298 161 RVPLIIETAGVPPLVTAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 235 THSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHS 314
Cdd:PRK06298 241 IAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLLDEG 320
|
330 340
....*....|....*....|....*...
gi 1440290787 315 RRYQFVSGEDLEPVMRVLWWLRQVEMAN 342
Cdd:PRK06298 321 KELKFIPESTYEAIGEILLYITSLNAQN 348
|
|
| PRK12772 |
PRK12772 |
fused FliR family export protein/FlhB family type III secretion system protein; |
4-312 |
1.62e-45 |
|
fused FliR family export protein/FlhB family type III secretion system protein;
Pssm-ID: 237199 [Multi-domain] Cd Length: 609 Bit Score: 164.47 E-value: 1.62e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 4 KTEKPTPKKLRDAAKKGQTFKAKDV--------TTLIVLAVGvlaaGIVVD-LRHVIAEF--SHVAAAGADQDAASYGLE 72
Cdd:PRK12772 265 KTEEATPKKKSDARKKGQIAKSKELalaitllaCTLVLSALG----GYVANtLKETMIYFlnNYLNMNLNYNSLNSLAII 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 73 WIRSYLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFV 152
Cdd:PRK12772 341 TLLRVAKIFLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFL 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 153 EQNHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKR 232
Cdd:PRK12772 421 QDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKI 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 233 RETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYR 312
Cdd:PRK12772 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIYK 580
|
|
| flhB |
PRK12468 |
flagellar biosynthesis protein FlhB; Reviewed |
4-359 |
4.96e-45 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 171522 Cd Length: 386 Bit Score: 159.04 E-value: 4.96e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 4 KTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVG-----VLAAGIVVDLRHVIAE---FSHVAAAGADQDAASYGLEWIR 75
Cdd:PRK12468 9 KSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGltilwMSGESMARQLSAMVAQglhFDHSMVSNDKQMLRQIGMLLRQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 76 SYLKMVMPFIVVCAVAGALPSLVQSrFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQN 155
Cdd:PRK12468 89 TLLAMLPIFAGLVIVALAVPMLLGG-VLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLFLWHN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 156 HRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMKRRET 235
Cdd:PRK12468 168 WPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 236 HSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSVYRHSR 315
Cdd:PRK12468 248 QRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHSE 327
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1440290787 316 RYQFVSGEDLEPVMRVLWWLRQVEmansgaRAHTDGG------EDFPLPE 359
Cdd:PRK12468 328 VGQHIPATLYAAVAEVLAWVYQLK------RWKREGGlipkkpEHLPVPE 371
|
|
| flhB |
PRK13109 |
flagellar biosynthesis protein FlhB; Reviewed |
3-335 |
4.19e-37 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183864 Cd Length: 358 Bit Score: 137.24 E-value: 4.19e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 3 SKTEKPTPKKLRDAAKKGQTFKAKDVTT-------LIVLA--VGVLAAGIVVDLRHVI---AEFSHVAAAGADQDAASYG 70
Cdd:PRK13109 9 SKTEEATERKVRDAIEKGDIPVSREAPVfasmlglLIALAffARGQAAQLTGDLAPLLddpRGFSLETGADAMLLLSRVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 71 LEWIRsylkMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPVAGFKKLFSGRAAKELLKALLHLVVLCAAISI 150
Cdd:PRK13109 89 LAAGR----FLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLSVSVVVLL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 151 FVEQNHRDLFQVFRASPEALAHEWIRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKM 230
Cdd:PRK13109 165 LLRSERAKAVNAMFVDPSQLPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 231 KRRETHSELLSEEVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSV 310
Cdd:PRK13109 245 RLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLARSL 324
|
330 340
....*....|....*....|....*
gi 1440290787 311 YRHSRRYQFVSGEDLEPVMRVLWWL 335
Cdd:PRK13109 325 YDAVQVDQVIPAEFYRPVAQILYFL 349
|
|
| flhB |
PRK12773 |
flagellar biosynthesis protein FlhB; Reviewed |
4-311 |
9.36e-19 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183737 Cd Length: 646 Bit Score: 87.81 E-value: 9.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 4 KTEKPTPKKLRDAAKKGQTFKAKDVTTLIVLAVGVLAAGIV-----VDLRHVIAEFSHVAAAGADQDAASYgLEWIRS-- 76
Cdd:PRK12773 300 RTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMgeyffMRTYYILRKYIHGVGLRTDMSSESV-TELLKNas 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 77 --YLKMVMPFIVVCAVAGALPSLVQSRFTLATEALKLDFGALDPvaGFKKLFSGRAAKELLKALLHLVVLCAAISIFVEQ 154
Cdd:PRK12773 379 tdLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIIS 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 155 nhRDLFQVFRASPEALAHEW---IRLTVKFVMVLLLCALPVALFDAVFEFFHYQKNVKMEKREVEQERKETEGRPETKMK 231
Cdd:PRK12773 457 --KDFFPILLSGEMGLEQAValvMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQAR 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440290787 232 RRETHSELLSE-EVKANVEQSKFIVANPTHIAIGIYMNEDIVPIPFVCVRETNARALAVIRHAEANGVPVVRDVPLARSV 310
Cdd:PRK12773 535 RRQLARDMMNKrKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGL 614
|
.
gi 1440290787 311 Y 311
Cdd:PRK12773 615 Y 615
|
|
| |
