|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 809.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 1 MFDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRN 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 81 ELVAAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 321 SKLKKGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKAQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:COG0541 320 KKLKKGK-FDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 1457638226 401 RIAAGCGMQVQDVNRLLKQFDDMQR 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-429 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 632.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 2 FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRNE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 82 LVAAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 162 SDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 242 LTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLAS 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 322 KLKKGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVK-AQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:TIGR00959 321 KMKKGQ-FDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSdADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....*....
gi 1457638226 401 RIAAGCGMQVQDVNRLLKQFDDMQRMMKK 429
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-431 |
2.18e-164 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 470.46 E-value: 2.18e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 5 LTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRNELVA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 85 AMGEENQTLDLAAQPpAVVLMAGLQGAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164
Cdd:PRK00771 81 LLGEETEPLVLPLKP-QTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 165 GQKPVDIVNAALKeaKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 245 VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLASKLK 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 325 KGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVkAQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRIA 403
Cdd:PRK00771 317 KGK-FTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEA-LEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIA 394
|
410 420
....*....|....*....|....*...
gi 1457638226 404 AGCGMQVQDVNRLLKQFDDMQRMMKKMK 431
Cdd:PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQLK 422
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
9.64e-118 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 342.27 E-value: 9.64e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 101 AVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKK-GKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 1457638226 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
8.49e-110 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 322.05 E-value: 8.49e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1457638226 260 LSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
2.09e-98 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 292.91 E-value: 2.09e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKkVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 182 KFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1457638226 262 IRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 809.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 1 MFDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRN 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 81 ELVAAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLK-KKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 321 SKLKKGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKAQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:COG0541 320 KKLKKGK-FDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 1457638226 401 RIAAGCGMQVQDVNRLLKQFDDMQR 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-429 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 632.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 2 FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRNE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 82 LVAAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 162 SDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 242 LTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLAS 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 322 KLKKGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVK-AQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:TIGR00959 321 KMKKGQ-FDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSdADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....*....
gi 1457638226 401 RIAAGCGMQVQDVNRLLKQFDDMQRMMKK 429
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-431 |
2.18e-164 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 470.46 E-value: 2.18e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 5 LTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRNELVA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 85 AMGEENQTLDLAAQPpAVVLMAGLQGAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164
Cdd:PRK00771 81 LLGEETEPLVLPLKP-QTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 165 GQKPVDIVNAALKeaKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTG 244
Cdd:PRK00771 159 NKDAVEIAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 245 VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLASKLK 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 325 KGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVkAQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRIA 403
Cdd:PRK00771 317 KGK-FTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEA-LEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIA 394
|
410 420
....*....|....*....|....*...
gi 1457638226 404 AGCGMQVQDVNRLLKQFDDMQRMMKKMK 431
Cdd:PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQLK 422
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
9.64e-118 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 342.27 E-value: 9.64e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 101 AVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKK-GKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 1457638226 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
8.49e-110 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 322.05 E-value: 8.49e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 1457638226 260 LSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
101-294 |
1.84e-98 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 293.13 E-value: 1.84e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKkVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKK-VLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Cdd:cd03115 80 LEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 1457638226 261 SIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294
Cdd:cd03115 160 SIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
2.09e-98 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 292.91 E-value: 2.09e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKkVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 182 KFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1457638226 262 IRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
2.43e-87 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 268.81 E-value: 2.43e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 1 MFDNLTDRLSRTLRNI--------SGRGRLTEDnikdTLREVRMALLEADVALPVVRDFISRVKESAVGhevnKSLTPGQ 72
Cdd:COG0552 1 FFERLKEGLSKTRSGLgeklkslfSGKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKR----KKLKDPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 73 EFVKIVRNELVAAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLA 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAE-GKSVLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 153 EQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAIN------PVETLFVVDAMTG 226
Cdd:COG0552 152 ERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTG 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 227 QDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILG 296
Cdd:COG0552 232 QNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-296 |
5.61e-77 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 242.70 E-value: 5.61e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 1 MFDNLTDRLSRTLRNISGR--GRLTEDNI-KDTLREVRMALLEADVALPVVRDFISRVKESAVGhevnKSLTPGQEFVKI 77
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGinGLFAKKKIdEDLLEELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 78 VRNELVAAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKkVLVVSADVYRPAAIKQLETLAEQVGV 157
Cdd:PRK10416 92 LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 158 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAIN------PVETLFVVDAMTGQDAAN 231
Cdd:PRK10416 171 PVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQNALS 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1457638226 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILG 296
Cdd:PRK10416 251 QAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
4-426 |
1.50e-75 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 242.82 E-value: 1.50e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 4 NLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTPGQEFVKIVRNELV 83
Cdd:TIGR01425 4 QLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 84 AAMGEENQTLDLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRR-GFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 164 VGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 244 GVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDRAQAEKLASKL 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 324 KKGDgFDLTDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVKAQMDDKVLVRMEAIINSMTLKE---RAKPEIIKGSRK 399
Cdd:TIGR01425 323 KEGT-FTLRDWYEQFQNLLKMGPLGNIMSMIPGLShPMMSKGNEEETSAKIKVFMTIMDSMTDREldsTAKTMLKDPSRI 401
|
410 420
....*....|....*....|....*..
gi 1457638226 400 RRIAAGCGMQVQDVNRLLKQFDDMQRM 426
Cdd:TIGR01425 402 RRVARGSGRDIREVNELLEQYKLFAQM 428
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-296 |
1.02e-72 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 232.17 E-value: 1.02e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 21 RLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGhevnKSLTPGQEFVKIVRNELVAAMGE---ENQTLDL-- 95
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVG----KKVKRGEDVEEIVKNALKEALLEvlsVGDLFDLie 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 96 ---AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIV 172
Cdd:PRK14974 133 eikSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 173 NAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 252
Cdd:PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1457638226 253 DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILG 296
Cdd:PRK14974 292 DAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
25-295 |
8.12e-71 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 225.60 E-value: 8.12e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 25 DNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGhevnKSLTPGQEFVKIVRNELVAAMGE-ENQTLDLAAQP---- 99
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKG----KKVKDAEKLKEILKEYLKEILKEdLLKNTDLELIVeenk 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKkVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179
Cdd:TIGR00064 77 PNVILFVGVNGVGKTTTIAKLANKLKKQGKS-VLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKHV------HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGD 253
Cdd:TIGR00064 156 KARNIDVVLIDTAGRLQNKVNLMDELKKIkrvikkVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGT 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1457638226 254 ARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRIL 295
Cdd:TIGR00064 236 AKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-288 |
3.85e-65 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 207.81 E-value: 3.85e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 101 AVVLMAGLQGAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLK-NQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAIN------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA 254
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190
....*....|....*....|....*....|....
gi 1457638226 255 RGGAALSIRHITGKPIKFLGVGEKTEALEPFHPD 288
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPE 193
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
1.36e-63 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 203.58 E-value: 1.36e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKK-GYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 182 KFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1457638226 262 IRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
329-425 |
3.13e-46 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 154.86 E-value: 3.13e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 329 FDLTDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVKAqmdDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRIAAGCGM 408
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDS---EKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSGT 78
|
90
....*....|....*..
gi 1457638226 409 QVQDVNRLLKQFDDMQR 425
Cdd:pfam02978 79 SVQEVNRLLKQFKQMKK 95
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-292 |
4.43e-38 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 137.36 E-value: 4.43e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREkHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLS-NGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 182 KFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEAL----------PLTGVVLTKVD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1457638226 252 G-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVAS 292
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
9-296 |
4.21e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 139.23 E-value: 4.21e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 9 LSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAvghevnksltPGQEFVKIVRNELVAAMGE 88
Cdd:COG1419 86 LKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEALARRLPV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 89 ENQTLdlaAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkP 168
Cdd:COG1419 156 AEDPL---LDEGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGV----------P 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 169 VDIVN--AALKEA--KLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDA-MTGQDAANTAKAFNEaLPLT 243
Cdd:COG1419 223 VEVAYdpEELKEAleRLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFSS-LGLD 301
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1457638226 244 GVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEK-TEALEPFHPDRVASRILG 296
Cdd:COG1419 302 GLILTKLDETASLGSILNLLIRTGLPLSYITNGQRvPEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
1.74e-33 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 124.58 E-value: 1.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkPVDIVN--AALKEA 179
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEdpEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 180 --KLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMT-GQDAANTAKAFnEALPLTGVVLTKVDGDARG 256
Cdd:cd17873 72 leRLSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 1457638226 257 GAALSIRHITGKPIKFLGVGEKT-EALEPFHPDRVASRI 294
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
6.77e-22 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 89.06 E-value: 6.77e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1457638226 5 LTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGhevNKSLTPGQEFVKIVRNEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
102-296 |
1.19e-21 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 96.50 E-value: 1.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKL-GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkPVDIVNAA--LKE 178
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLaARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEVVYDPkeLAK 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 179 A--KLKFYDVLLVDTAGRLHVDEAMMDEIKH-VHAAINPVETlFVVDAMTGQ--DAANTAKAFNEaLPLTGVVLTKVDGD 253
Cdd:PRK05703 293 AleQLRDCDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDV-YLVLSATTKyeDLKDIYKHFSR-LPLDGLIFTKLDET 370
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1457638226 254 ARGGAALSIRHITGKPIKFLGVG-EKTEALEPFHPDRVASRILG 296
Cdd:PRK05703 371 SSLGSILSLLIESGLPISYLTNGqRVPDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
1.09e-20 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 85.68 E-value: 1.09e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1457638226 9 LSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVGhEVNKSLTPGQEFVKIVRNELVAAM 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-300 |
1.24e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 75.80 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNaalkeaK 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHApRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE------R 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAiNPVETLFVVDAMTG-QDAANTAKAFNEALPlTGVVLTKVDGDARGGAA 259
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHfSDLDEVVRRFAHAKP-QGVVLTKLDETGRFGSA 503
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1457638226 260 LSIRHITGKPIKFLGVGEKTEalEPFHPDRVASRILGMGDV 300
Cdd:PRK12727 504 LSVVVDHQMPITWVTDGQRVP--DDLHRANAASLVLRLEDL 542
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-277 |
4.59e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 73.84 E-value: 4.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKpvdivnaaLKEAKL 181
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK--------FKETLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 182 K-FYDVLLVDTAGRLHVDEAMMDEIKHVHAAI---NPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGG 257
Cdd:PRK12724 297 RdGSELILIDTAGYSHRNLEQLERMQSFYSCFgekDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376
|
170 180
....*....|....*....|
gi 1457638226 258 AALSIRHITGKPIKFLGVGE 277
Cdd:PRK12724 377 SFLELADTYSKSFTYLSVGQ 396
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
31-193 |
6.05e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 71.98 E-value: 6.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 31 LREVRMALLEADVALPVVRDFISRVKESAVGHEVNKSLTpgqefvkivrnELVAAMGEENQTLDLAAQPPAVVLMAGLQG 110
Cdd:TIGR03499 136 RAKLYERLLEAGVSEELARELLEKLPEDADAEDAWRWLR-----------EALEGMLPVKPEEDPILEQGGVIALVGPTG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 111 AGKTTSVGKL-GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkPVDIVN--AALKEA--KLKFYD 185
Cdd:TIGR03499 205 VGKTTTLAKLaARFALEHGKKKVALITTDTYRIGAVEQLKTYAEILGI----------PVKVARdpKELREAldRLRDKD 274
|
....*...
gi 1457638226 186 VLLVDTAG 193
Cdd:TIGR03499 275 LILIDTAG 282
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
102-296 |
2.76e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 65.14 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFpsdVGQKPVDIVNAALKEAKL 181
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 182 KFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDA-MTGQDAANTAKAFNEaLPLTGVVLTKVDGDARGGAAL 260
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLY 362
|
170 180 190
....*....|....*....|....*....|....*....
gi 1457638226 261 SIRHITGKPIKFLGVGEK-TEALepFHPDR--VASRILG 296
Cdd:PRK12726 363 TVMQETNLPVLYMTDGQNiTENI--FRPKSrwLAERFVG 399
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
101-278 |
1.96e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 62.05 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 101 AVVLMAGLQGAGKTTSVGKLG-KFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkPVDIV----NAA 175
Cdd:PRK14722 138 GVFALMGPTGVGKTTTTAKLAaRCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV----------PVHAVkdggDLQ 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAAN-TAKAFNE-------ALP-LTGVV 246
Cdd:PRK14722 208 LALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSaagqpkaALPdLAGCI 287
|
170 180 190
....*....|....*....|....*....|..
gi 1457638226 247 LTKVDGDARGGAALSIRHITGKPIKFLGVGEK 278
Cdd:PRK14722 288 LTKLDEASNLGGVLDTVIRYKLPVHYVSTGQK 319
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
37-316 |
5.68e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 55.19 E-value: 5.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 37 ALLEADVALPVVRDFISRvkesavghevnksLTPGQEFVKI---VRNELVA---AMGEENqtlDLAAQPPAVVLMaGLQG 110
Cdd:PRK14723 133 WLLGAGFSGQLARALLER-------------LPVGYDRPAAmawIRNELAThlpVLRDED---ALLAQGGVLALV-GPTG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 111 AGKTTSVGKLG-KFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkPVDIVNAA----LKEAKLKFYD 185
Cdd:PRK14723 196 VGKTTTTAKLAaRCVAREGADQLALLTTDSFRIGALEQLRIYGRILGV----------PVHAVKDAadlrFALAALGDKH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 186 VLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAAN-TAKAF-NEALP-LTGVVLTKVDGDARGGAAL-- 260
Cdd:PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYrHGAGEdVDGCIITKLDEATHLGPALdt 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1457638226 261 SIRHITgkPIKFLGVGEKT-EALEPFHPDRVASRILGMGDVLSLIEDIESkvDRAQA 316
Cdd:PRK14723 346 VIRHRL--PVHYVSTGQKVpEHLELAQADELVDRAFATPRRGALFAPSEA--DLAAL 398
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
103-277 |
1.49e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 53.53 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 103 VLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGvdffpSDVgqkpVDIVNAALKEAKLK 182
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIG-----FEV----IAVRDEAAMTRALT 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 183 FY------DVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDA-MTGQDAANTAKAFNEaLPLTGVVLTKVDGDAR 255
Cdd:PRK11889 314 YFkeearvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETAS 392
|
170 180
....*....|....*....|..
gi 1457638226 256 GGAALSIRHITGKPIKFLGVGE 277
Cdd:PRK11889 393 SGELLKIPAVSSAPIVLMTDGQ 414
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
100-342 |
1.83e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 52.98 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 100 PAVVLMAGLQGAGKTTSVGKLGKFL---REKHKKKVLVVSADVYRPAAIKQLETLAEQVGVdffpsdvgqkPVDIVNA-- 174
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYginSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI----------PVKAIESfk 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 175 ALKEAKL--KFYDVLLVDTAGRLHVDEAMMDEIKH-VHAAINPVETLFVVDAMTgqDAANTAKAFNEALPL--TGVVLTK 249
Cdd:PRK12723 244 DLKEEITqsKDFDLVLVDTIGKSPKDFMKLAEMKElLNACGRDAEFHLAVSSTT--KTSDVKEIFHQFSPFsyKTVIFTK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 250 VDGDARGGAALSIRHITGKPIKFLGVGEktealepfhpdrvasrilgmgdvlSLIEDIeskvdrAQAEKLaSKLKKGDGF 329
Cdd:PRK12723 322 LDETTCVGNLISLIYEMRKEVSYVTDGQ------------------------IVPHNI------SIAEPL-TFIKKINGY 370
|
250
....*....|...
gi 1457638226 330 DLTDFLEQLRQMK 342
Cdd:PRK12723 371 RISDDAEFIRKLK 383
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
99-212 |
2.78e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 49.68 E-value: 2.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHkKKVLVVSADVYRPAAIKQLEtlaeqvGVDFFPSDVGQKPVDIVNAALKE 178
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALAL 73
|
90 100 110
....*....|....*....|....*....|....
gi 1457638226 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAI 212
Cdd:smart00382 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
103-277 |
1.23e-06 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 49.74 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 103 VLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLk 182
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV- 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 183 fyDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDA-MTGQDAANTAKAFNEaLPLTGVVLTKVDGDARGGAALS 261
Cdd:PRK06731 156 --DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 232
|
170
....*....|....*.
gi 1457638226 262 IRHITGKPIKFLGVGE 277
Cdd:PRK06731 233 IPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
102-262 |
6.06e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 48.41 E-value: 6.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 102 VVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETLAEQVGVdffpSDVGQKPVDIVNAALKEAK 180
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHgADKVALLTTDSYRIGGHEQLRIYGKLLGV----SVRSIKDIADLQLMLHELR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 181 LKfyDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAAL 260
Cdd:PRK14721 269 GK--HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
..
gi 1457638226 261 SI 262
Cdd:PRK14721 347 DA 348
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
110-275 |
1.45e-05 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 46.18 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 110 GAGKTTSVGKLGKFLReKHKKKVLVVSADVYRPAA---------IKQLETLAE------------------QVGVDFFPS 162
Cdd:pfam01656 9 GVGKTTLAANLARALA-RRGLRVLLIDLDPQSNNSsveglegdiAPALQALAEglkgrvnldpillkeksdEGGLDLIPG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 163 DV----------GQKPVDIVNAALKEAKlKFYDVLLVDTAGRLHVDeaMMDEIKHVHAAINPV--ETLFVVDAM-TGQDA 229
Cdd:pfam01656 88 NIdlekfekellGPRKEERLREALEALK-EDYDYVIIDGAPGLGEL--LRNALIAADYVIIPLepEVILVEDAKrLGGVI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1457638226 230 ANTAKAFNEA-LPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGV 275
Cdd:pfam01656 165 AALVGGYALLgLKIIGVVLNKVDGDNHGKLLKEALEELLRGLPVLGV 211
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
71-264 |
2.65e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.95 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 71 GQEFVKIVRNELVAAMGEENQTLDlaaQPPAVVLMaGLQGAGKTTSVGKL-GKFLREKHKKKVLVVSADVYRPAAIKQLE 149
Cdd:PRK06995 231 ALDWVQSALAKNLPVLDSEDALLD---RGGVFALM-GPTGVGKTTTTAKLaARCVMRHGASKVALLTTDSYRIGGHEQLR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1457638226 150 TLAEQVGVdffpsdvgqkPVDIV-NA-----ALKEAKLKfyDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDA 223
Cdd:PRK06995 307 IYGKILGV----------PVHAVkDAadlrlALSELRNK--HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNA 374
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1457638226 224 MTGQDAAN-TAKAFNEAlPLTGVVLTKVDGDARGGAALS--IRH 264
Cdd:PRK06995 375 TSHGDTLNeVVQAYRGP-GLAGCILTKLDEAASLGGALDvvIRY 417
|
|
| COG4639 |
COG4639 |
Predicted kinase [General function prediction only]; |
99-141 |
6.53e-03 |
|
Predicted kinase [General function prediction only];
Pssm-ID: 443677 [Multi-domain] Cd Length: 145 Bit Score: 37.12 E-value: 6.53e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1457638226 99 PPAVVLMAGLQGAGKTTsvgklgkFLReKHKKKVLVVSADVYR 141
Cdd:COG4639 1 MLSLVVLIGLPGSGKST-------FAR-RLFAPTEVVSSDDIR 35
|
|
| |
