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Conserved domains on  [gi|1582640184|gb|TBE20592|]
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hypothetical protein ELH05_28515 (plasmid) [Rhizobium ruizarguesonis]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 106779)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AdoMet_MTases super family cl17173
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
20-53 2.71e-04

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


The actual alignment was detected with superfamily member pfam12692:

Pssm-ID: 473071  Cd Length: 160  Bit Score: 35.88  E-value: 2.71e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1582640184  20 ARNGIAVCGLLLEYAEL--VPPPADVKEGRYFHYRR 53
Cdd:pfam12692 125 APGGLAVSGLPLDHEGLepLPLPDGIPEGRYFFYRR 160
 
Name Accession Description Interval E-value
Methyltransf_17 pfam12692
S-adenosyl-L-methionine methyltransferase; This domain is found in bacterial proteins. The ...
20-53 2.71e-04

S-adenosyl-L-methionine methyltransferase; This domain is found in bacterial proteins. The structure of the proteins in this family suggest that they function as a methyltransferase.


Pssm-ID: 432723  Cd Length: 160  Bit Score: 35.88  E-value: 2.71e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1582640184  20 ARNGIAVCGLLLEYAEL--VPPPADVKEGRYFHYRR 53
Cdd:pfam12692 125 APGGLAVSGLPLDHEGLepLPLPDGIPEGRYFFYRR 160
 
Name Accession Description Interval E-value
Methyltransf_17 pfam12692
S-adenosyl-L-methionine methyltransferase; This domain is found in bacterial proteins. The ...
20-53 2.71e-04

S-adenosyl-L-methionine methyltransferase; This domain is found in bacterial proteins. The structure of the proteins in this family suggest that they function as a methyltransferase.


Pssm-ID: 432723  Cd Length: 160  Bit Score: 35.88  E-value: 2.71e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1582640184  20 ARNGIAVCGLLLEYAEL--VPPPADVKEGRYFHYRR 53
Cdd:pfam12692 125 APGGLAVSGLPLDHEGLepLPLPDGIPEGRYFFYRR 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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