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Conserved domains on  [gi|1586820509|gb|TCB89088|]
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peptidoglycan-binding protein LysM [Enterobacter quasihormaechei]

Protein Classification

LysM and BON domain-containing protein( domain architecture ID 11485265)

LysM and BON domain-containing protein similar to Escherichia coli potassium binding protein Kbp (YgaU), a highly specific potassium binding protein that is required for normal growth in the presence of high levels of external K(+)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-145 6.55e-74

LysM domain/BON superfamily protein; Provisional


:

Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 217.09  E-value: 6.55e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586820509   1 MGLFNFVKEAGEKLWDNLTDHKG---QSDKITEHLKKLNIPGSDkVQVNVTDGKASVTGDGLTQEQKEKIQVAVGNIAGV 77
Cdd:PRK11198    1 MGLFSFVKEAGEKLFDAVTAQADnedAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1586820509  78 SEVENNITATDAKDEATYYTVKSGDTLSAISKTVYGDANQYNKIFEANRPMLSSPDKIYPGQTLRIPK 145
Cdd:PRK11198   80 ASVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
 
Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-145 6.55e-74

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 217.09  E-value: 6.55e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586820509   1 MGLFNFVKEAGEKLWDNLTDHKG---QSDKITEHLKKLNIPGSDkVQVNVTDGKASVTGDGLTQEQKEKIQVAVGNIAGV 77
Cdd:PRK11198    1 MGLFSFVKEAGEKLFDAVTAQADnedAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1586820509  78 SEVENNITATDAKDEATYYTVKSGDTLSAISKTVYGDANQYNKIFEANRPMLSSPDKIYPGQTLRIPK 145
Cdd:PRK11198   80 ASVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 85-146 1.20e-28

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 103.16  E-value: 1.20e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1586820509  85 TATDAKDEATYYTVKSGDTLSAISKTVYGDANQYNKIFEANRPMLSSPDKIYPGQTLRIPKA 146
Cdd:COG1652   101 SAELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIPAL 162
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 94-143 5.52e-11

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 54.03  E-value: 5.52e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1586820509  94 TYYTVKSGDTLSAISKTVYGDANQynkIFEANRpmLSSPDKIYPGQTLRI 143
Cdd:cd00118     1 KTYTVKPGDTLWSIAKKYGVTVEE---LAAANP--LINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
95-143 2.93e-09

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 49.75  E-value: 2.93e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1586820509   95 YYTVKSGDTLSAISKTVYGDAnqyNKIFEANRpmLSSPDKIYPGQTLRI 143
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISV---SDLLELNN--ILDPDNLQVGQKLKI 44
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 96-144 3.48e-09

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 49.32  E-value: 3.48e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1586820509  96 YTVKSGDTLSAIsktvygdANQYN----KIFEANRpmLSSPDkIYPGQTLRIP 144
Cdd:pfam01476   1 YTVKKGDTLSSI-------AKRYGitveQLAELNG--LSSPN-LYVGQKLKIP 43
 
Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-145 6.55e-74

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 217.09  E-value: 6.55e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586820509   1 MGLFNFVKEAGEKLWDNLTDHKG---QSDKITEHLKKLNIPGSDkVQVNVTDGKASVTGDGLTQEQKEKIQVAVGNIAGV 77
Cdd:PRK11198    1 MGLFSFVKEAGEKLFDAVTAQADnedAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1586820509  78 SEVENNITATDAKDEATYYTVKSGDTLSAISKTVYGDANQYNKIFEANRPMLSSPDKIYPGQTLRIPK 145
Cdd:PRK11198   80 ASVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 85-146 1.20e-28

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 103.16  E-value: 1.20e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1586820509  85 TATDAKDEATYYTVKSGDTLSAISKTVYGDANQYNKIFEANRPMLSSPDKIYPGQTLRIPKA 146
Cdd:COG1652   101 SAELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIPAL 162
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 94-143 5.52e-11

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 54.03  E-value: 5.52e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1586820509  94 TYYTVKSGDTLSAISKTVYGDANQynkIFEANRpmLSSPDKIYPGQTLRI 143
Cdd:cd00118     1 KTYTVKPGDTLWSIAKKYGVTVEE---LAAANP--LINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
95-143 2.93e-09

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 49.75  E-value: 2.93e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1586820509   95 YYTVKSGDTLSAISKTVYGDAnqyNKIFEANRpmLSSPDKIYPGQTLRI 143
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISV---SDLLELNN--ILDPDNLQVGQKLKI 44
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 96-144 3.48e-09

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 49.32  E-value: 3.48e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1586820509  96 YTVKSGDTLSAIsktvygdANQYN----KIFEANRpmLSSPDkIYPGQTLRIP 144
Cdd:pfam01476   1 YTVKKGDTLSSI-------AKRYGitveQLAELNG--LSSPN-LYVGQKLKIP 43
BON pfam04972
BON domain; This domain is found in a family of osmotic shock protection proteins. It is also ...
 26-85 3.69e-09

BON domain; This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.


Pssm-ID: 428229 [Multi-domain]  Cd Length: 69  Bit Score: 49.91  E-value: 3.69e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586820509  26 DKITEHLKKLNIPGSDKVQVNVTDGKASVTGDGLTQEQKEKIQVAVGNIAGVSEVENNIT 85
Cdd:pfam04972   7 AKVKAALAKDPGLDAADINVTVENGVVTLSGTVPSEAEKEKAEEIARNVAGVKKVVNQLT 66
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
87-146 9.43e-09

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 51.25  E-value: 9.43e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1586820509  87 TDAKDEATYYTVKSGDTLSAIsktvygdANQYN----KIFEANRpmLSSpDKIYPGQTLRIPKA 146
Cdd:COG1388   103 AAAAPSPVTYTVKKGDTLWSI-------ARRYGvsveELKRWNG--LSS-DTIRPGQKLKIPAS 156
BON smart00749
bacterial OsmY and nodulation domain;
26-83 1.55e-04

bacterial OsmY and nodulation domain;


Pssm-ID: 197856 [Multi-domain]  Cd Length: 61  Bit Score: 37.67  E-value: 1.55e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1586820509   26 DKITEHLKKLNIPGSDKVQVNVTDGKASVTGDGLTQEQKEKIQVAVGNIAGVSEVENN 83
Cdd:smart00749   1 EKVKKALAKDGLIKADSIVVVTDGGVVVLLGGVVDNAEAAAAAAAAAVVGGVKVVVVN 58
OsmY COG2823
Osmotically-inducible protein OsmY, contains BON domain [Cell wall/membrane/envelope ...
 26-85 1.96e-04

Osmotically-inducible protein OsmY, contains BON domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442071 [Multi-domain]  Cd Length: 157  Bit Score: 39.26  E-value: 1.96e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586820509  26 DKITEHLKKLNIPGSDKVQVNVTDGKASVTGDGLTQEQKEKIQVAVGNIAGVSEVENNIT 85
Cdd:COG2823    25 AKVKAALLADPGLDAADINVTVYNGVVTLTGQVPSEAEKDRAEEIARGVPGVKSVVNELR 84
OapA COG3061
Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell ...
 84-143 1.90e-03

Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442295 [Multi-domain]  Cd Length: 425  Bit Score: 37.34  E-value: 1.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1586820509  84 ITATDAKDEATYYTVKSGDTLSAISKTV---YGDANQYNKIFEANRPMlsspDKIYPGQTLRI 143
Cdd:COG3061    60 AAPAAPEGEWQEYTVQSGDTLSQIFRRLglsASDLYALLAAEGDAKPL----SRLKPGQELRF 118
gpX COG5004
P2-like prophage tail protein X [Mobilome: prophages, transposons];
93-144 5.66e-03

P2-like prophage tail protein X [Mobilome: prophages, transposons];


Pssm-ID: 444028  Cd Length: 69  Bit Score: 33.69  E-value: 5.66e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1586820509  93 ATYYTVKSGDTLSAISKTVYGDANQY-NKIFEANrPMLSSPDKIYP-GQTLRIP 144
Cdd:COG5004     2 AMTYRTRQGDTLDALCWRYYGRTAGVvEAVLAAN-PGLAALGPVLPaGTVVTLP 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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