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Conserved domains on  [gi|1589121704|gb|TCT85602|]
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uncharacterized protein DUF2850 [Vibrio crassostreae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2850 super family cl12582
Protein of unknown function (DUF2850); This family of proteins with unknown function appear to ...
 47-126 1.03e-32

Protein of unknown function (DUF2850); This family of proteins with unknown function appear to be restricted to Vibrionaceae.


The actual alignment was detected with superfamily member pfam11012:

Pssm-ID: 431605  Cd Length: 79  Bit Score: 110.86  E-value: 1.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589121704  47 NVYGTWIEIAAPPYNTDILTFSDKGVMMNHRLITTSFDFDGKIVTINTGSGTTVYTISGTYDSpRLKRLEPSVPSQQFVK 126
Cdd:pfam11012   1 NVYGIWVEQGVAPYAADSFTLSEQGVYVNGRLISTHFEFDGKRLEYNTGDGVYHYQLSGTDNS-QLKRISPAHYNPVFRL 79
 
Name Accession Description Interval E-value
DUF2850 pfam11012
Protein of unknown function (DUF2850); This family of proteins with unknown function appear to ...
 47-126 1.03e-32

Protein of unknown function (DUF2850); This family of proteins with unknown function appear to be restricted to Vibrionaceae.


Pssm-ID: 431605  Cd Length: 79  Bit Score: 110.86  E-value: 1.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589121704  47 NVYGTWIEIAAPPYNTDILTFSDKGVMMNHRLITTSFDFDGKIVTINTGSGTTVYTISGTYDSpRLKRLEPSVPSQQFVK 126
Cdd:pfam11012   1 NVYGIWVEQGVAPYAADSFTLSEQGVYVNGRLISTHFEFDGKRLEYNTGDGVYHYQLSGTDNS-QLKRISPAHYNPVFRL 79
 
Name Accession Description Interval E-value
DUF2850 pfam11012
Protein of unknown function (DUF2850); This family of proteins with unknown function appear to ...
 47-126 1.03e-32

Protein of unknown function (DUF2850); This family of proteins with unknown function appear to be restricted to Vibrionaceae.


Pssm-ID: 431605  Cd Length: 79  Bit Score: 110.86  E-value: 1.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589121704  47 NVYGTWIEIAAPPYNTDILTFSDKGVMMNHRLITTSFDFDGKIVTINTGSGTTVYTISGTYDSpRLKRLEPSVPSQQFVK 126
Cdd:pfam11012   1 NVYGIWVEQGVAPYAADSFTLSEQGVYVNGRLISTHFEFDGKRLEYNTGDGVYHYQLSGTDNS-QLKRISPAHYNPVFRL 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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