NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1589296962|gb|TCV59140|]
View 

putative solute:sodium symporter small subunit [Vibrio crassostreae]

Protein Classification

DUF4212 domain-containing protein( domain architecture ID 10008497)

DUF4212 domain-containing protein similar to Shewanella oneidensis solute:sodium symporter small subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG4327 COG4327
Uncharacterized membrane protein, DUF4212 domain [Function unknown];
4-87 2.29e-36

Uncharacterized membrane protein, DUF4212 domain [Function unknown];


:

Pssm-ID: 443468  Cd Length: 87  Bit Score: 117.63  E-value: 2.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589296962  4 ESTEHAQAYWKENLGIMGTLLAVWFAVSYGAGiLFVDALNTVQFGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKY 83
Cdd:COG4327    5 NLPEPATAYWRRNLRLIAILLVIWFLVSFGFG-LFARELNQIRFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKY 83


                 ....
gi 1589296962 84 NVQE 87
Cdd:COG4327   84 GVDE 87
 
Name Accession Description Interval E-value
COG4327 COG4327
Uncharacterized membrane protein, DUF4212 domain [Function unknown];
4-87 2.29e-36

Uncharacterized membrane protein, DUF4212 domain [Function unknown];


Pssm-ID: 443468  Cd Length: 87  Bit Score: 117.63  E-value: 2.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589296962  4 ESTEHAQAYWKENLGIMGTLLAVWFAVSYGAGiLFVDALNTVQFGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKY 83
Cdd:COG4327    5 NLPEPATAYWRRNLRLIAILLVIWFLVSFGFG-LFARELNQIRFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKY 83


                 ....
gi 1589296962 84 NVQE 87
Cdd:COG4327   84 GVDE 87
Na_symport_sm TIGR03647
putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic ...
 11-87 1.20e-35

putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 132686  Cd Length: 77  Bit Score: 115.37  E-value: 1.20e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1589296962 11 AYWKENLGIMGTLLAVWFAVSYGAGILFVDALNTVQFGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKYNVQE 87
Cdd:TIGR03647  1 AYWRANLRLIAVLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRKYGVDE 77
DUF4212 pfam13937
Domain of unknown function (DUF4212); This family includes several putative integral membrane ...
 9-84 1.02e-34

Domain of unknown function (DUF4212); This family includes several putative integral membrane proteins which have been predicted as the putative subunit of transporters for D-alanine or lactate.


Pssm-ID: 433592  Cd Length: 77  Bit Score: 113.35  E-value: 1.02e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1589296962  9 AQAYWKENLGIMGTLLAVWFAVSYGAGILFVDALNTVQ-FGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKYN 84
Cdd:pfam13937  1 ARAYWRANLRLILILLAIWFVVSFGFGILFAPELNTIRtFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKYG 77
 
Name Accession Description Interval E-value
COG4327 COG4327
Uncharacterized membrane protein, DUF4212 domain [Function unknown];
4-87 2.29e-36

Uncharacterized membrane protein, DUF4212 domain [Function unknown];


Pssm-ID: 443468  Cd Length: 87  Bit Score: 117.63  E-value: 2.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589296962  4 ESTEHAQAYWKENLGIMGTLLAVWFAVSYGAGiLFVDALNTVQFGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKY 83
Cdd:COG4327    5 NLPEPATAYWRRNLRLIAILLVIWFLVSFGFG-LFARELNQIRFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKY 83


                 ....
gi 1589296962 84 NVQE 87
Cdd:COG4327   84 GVDE 87
Na_symport_sm TIGR03647
putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic ...
 11-87 1.20e-35

putative solute:sodium symporter small subunit; Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 132686  Cd Length: 77  Bit Score: 115.37  E-value: 1.20e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1589296962 11 AYWKENLGIMGTLLAVWFAVSYGAGILFVDALNTVQFGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKYNVQE 87
Cdd:TIGR03647  1 AYWRANLRLIAVLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRKYGVDE 77
DUF4212 pfam13937
Domain of unknown function (DUF4212); This family includes several putative integral membrane ...
 9-84 1.02e-34

Domain of unknown function (DUF4212); This family includes several putative integral membrane proteins which have been predicted as the putative subunit of transporters for D-alanine or lactate.


Pssm-ID: 433592  Cd Length: 77  Bit Score: 113.35  E-value: 1.02e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1589296962  9 AQAYWKENLGIMGTLLAVWFAVSYGAGILFVDALNTVQ-FGGFKLGFWFAQQGSIYTFVALIFIYVVRMNALDKKYN 84
Cdd:pfam13937  1 ARAYWRANLRLILILLAIWFVVSFGFGILFAPELNTIRtFGGFPLGFWFAAQGSILVFVVLIFVYAWRMNRLDRKYG 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH