NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1592995637|gb|TDF28028|]
View 

flagellin FliC [Delftia tsuruhatensis]

Protein Classification

flagellin( domain architecture ID 1001289)

flagellin polymerizes to form the filaments of bacterial flagella

CATH:  3.30.70.2120|1.20.1330.10
Gene Ontology:  GO:0009288|GO:0005576
PubMed:  34299141
SCOP:  4007637

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK08869 super family cl35743
polar flagellin E;
5-293 2.94e-98

polar flagellin E;


The actual alignment was detected with superfamily member PRK08869:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 293.37  E-value: 2.94e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK08869    4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTV-FQVGANTG---------- 153
Cdd:PRK08869   84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKsFQIGANSGeavsldlksm 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 154 --------------------------ADNQITISAVDLSD-----------------------------AAALNVDG--- 175
Cdd:PRK08869  164 rsdakimggvsydaeggadkdwtvgaGNTDLNVSFDDKGGetqaitinakagddieelatyingqtdgvGASVSEDGklq 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 176 ----ATTPPSLVGALGSLA-----GTGSTPT------STAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQV 240
Cdd:PRK08869  244 lfaaGQKVSGGVSFSGGLAaelglGNATAVTvddldiSTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQN 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1592995637 241 AAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK08869  324 ISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
5-293 2.94e-98

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 293.37  E-value: 2.94e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK08869    4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTV-FQVGANTG---------- 153
Cdd:PRK08869   84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKsFQIGANSGeavsldlksm 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 154 --------------------------ADNQITISAVDLSD-----------------------------AAALNVDG--- 175
Cdd:PRK08869  164 rsdakimggvsydaeggadkdwtvgaGNTDLNVSFDDKGGetqaitinakagddieelatyingqtdgvGASVSEDGklq 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 176 ----ATTPPSLVGALGSLA-----GTGSTPT------STAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQV 240
Cdd:PRK08869  244 lfaaGQKVSGGVSFSGGLAaelglGNATAVTvddldiSTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQN 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1592995637 241 AAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK08869  324 ISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-293 9.20e-65

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 204.69  E-value: 9.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:NF038071    1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS----SPTVFQVGANTgadn 156
Cdd:NF038071   81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGgkfeAAVTFQIGGSS---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 157 qitisavdlsdAAALNVDGATtppSLVGALGSLAGTGSTPTSTAG----DARLSMAAIDTALDLVNNTRATFGAAQNRFE 232
Cdd:NF038071  157 -----------AEKLDVDASA---NVQKVNAEVVGTEKDVTAGIGtqakAASAAITKLDTLLGDIGAVRSQFGANINRLE 222

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1592995637 233 AVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:NF038071  223 HTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-293 1.65e-62

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 197.39  E-value: 1.65e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   3 SIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGAL 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  83 GKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSptvfqvgantgadnqitisa 162
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTA-------------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 163 vdlSDAAALNVDGattppslvgalgslagtgstpTSTAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAA 242
Cdd:COG1344   141 ---TDTPPFQVDY---------------------QGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLS 196

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1592995637 243 ENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLpqSVLKLIQ 293
Cdd:COG1344   197 ENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQL--SLLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-139 2.95e-35

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 123.99  E-value: 2.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLN 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLA 135
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 5-284 1.05e-27

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 108.97  E-value: 1.05e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPT-------------------- 144
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDtppfsedeggevtyngdggq 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 145 -VFQVGANTGADNQITISAVDLSDAAALNVDGATTpPSLVGALGSLAGTGSTPTSTAGDARlSMAAIDTALDLVNNTRAT 223
Cdd:TIGR02550 162 rKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTG-DDLIDALKKLEDALSSGDAKAALSA-SLNDLDKALDNVLSARAE 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1592995637 224 FGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQL 284
Cdd:TIGR02550 240 VGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQL 300
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
5-293 2.94e-98

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 293.37  E-value: 2.94e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK08869    4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTV-FQVGANTG---------- 153
Cdd:PRK08869   84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKsFQIGANSGeavsldlksm 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 154 --------------------------ADNQITISAVDLSD-----------------------------AAALNVDG--- 175
Cdd:PRK08869  164 rsdakimggvsydaeggadkdwtvgaGNTDLNVSFDDKGGetqaitinakagddieelatyingqtdgvGASVSEDGklq 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 176 ----ATTPPSLVGALGSLA-----GTGSTPT------STAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQV 240
Cdd:PRK08869  244 lfaaGQKVSGGVSFSGGLAaelglGNATAVTvddldiSTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQN 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1592995637 241 AAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK08869  324 ISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK12802 PRK12802
flagellin; Provisional
 1-293 6.98e-88

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 263.66  E-value: 6.98e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTV-FQVGANTGADNQIT 159
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMtFQVGANTGQSNQIT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 160 ISAVDLSDAAALNVDGATTPpslvgalgslagTGSTPTSTAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQ 239
Cdd:PRK12802  161 FGLSASFDATGLGVGSGTLI------------TGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQ 228

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1592995637 240 VAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK12802  229 NINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK06819 PRK06819
FliC/FljB family flagellin;
1-292 2.05e-81

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 250.46  E-value: 2.05e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK06819    1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTVFQVGANTGADNQITI 160
Cdd:PRK06819   81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDTTMSIQVGANDGETIDINL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 161 SAVD------------------------------------------LSDAAALNVDGATTPPSLVGALGSLA-------- 190
Cdd:PRK06819  161 QKIDskslglgsfsvsgvsgaltsltftdtaldtsvtgvttttaldFSDISTFAKGATVHGIGDVGTDGAYAdgyvirtt 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 191 -GTGSTPTSTAGDARLSM--------------------------------AAIDTALDLVNNTRATFGAAQNRFEAVISN 237
Cdd:PRK06819  241 dGKQYKGEVDATNGKVTFaddangdpitdatkleaaaqfspagkatasplETLDDALKQVDGLRSSLGAVQNRFESTVTN 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1592995637 238 LQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLI 292
Cdd:PRK06819  321 LNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLL 375
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-293 9.20e-65

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 204.69  E-value: 9.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:NF038071    1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS----SPTVFQVGANTgadn 156
Cdd:NF038071   81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGgkfeAAVTFQIGGSS---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 157 qitisavdlsdAAALNVDGATtppSLVGALGSLAGTGSTPTSTAG----DARLSMAAIDTALDLVNNTRATFGAAQNRFE 232
Cdd:NF038071  157 -----------AEKLDVDASA---NVQKVNAEVVGTEKDVTAGIGtqakAASAAITKLDTLLGDIGAVRSQFGANINRLE 222

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1592995637 233 AVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:NF038071  223 HTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-293 1.65e-62

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 197.39  E-value: 1.65e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   3 SIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGAL 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  83 GKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSptvfqvgantgadnqitisa 162
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTA-------------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 163 vdlSDAAALNVDGattppslvgalgslagtgstpTSTAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAA 242
Cdd:COG1344   141 ---TDTPPFQVDY---------------------QGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLS 196

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1592995637 243 ENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLpqSVLKLIQ 293
Cdd:COG1344   197 ENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQL--SLLDLLR 245
PRK12804 PRK12804
flagellin; Provisional
 5-293 5.61e-60

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 192.91  E-value: 5.61e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK12804    3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAAND-TNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLN----------SSSPTVFQVGANTG 153
Cdd:PRK12804   83 THSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDgtfkpaapaaGTKSLTFQIGANAA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 154 ADNQITISAVDLSDAAALNVDGATTPPSLVGALgSLAGTGSTPTSTAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEA 233
Cdd:PRK12804  163 QQLSVNIEAMSADALGVKDTDGTLVTGKSVSDI-DVTKFANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNRLEH 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 234 VISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK12804  242 TINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK12807 PRK12807
flagellin; Provisional
 5-293 4.08e-57

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 185.41  E-value: 4.08e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK12807    3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLnsSSPTVFQVGANTGADNQITISAVD 164
Cdd:PRK12807   83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL--AGTGAVTIGSTSISGAEISIETLD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 165 LSDA-AALNVDGATTPPSlvgALGSLAGTGSTPTSTAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAE 243
Cdd:PRK12807  161 SSATnQQITIKLANTTAE---KLGIDATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQAT 237

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1592995637 244 NTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK12807  238 NMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK12806 PRK12806
flagellin; Provisional
 1-293 3.64e-53

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 180.27  E-value: 3.64e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK12806    1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS-SPTVFQVGANT------- 152
Cdd:PRK12806   81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSfSGASFQVGANSnqtinfs 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 153 ----------------------------------GADNQITIS--------------------AVDLSDAAALNVDGATT 178
Cdd:PRK12806  161 igsikassiggiatatgtevagaaatditiaiggGAATSINSSanftgalngqdatsayakaaAINDAGIGGLSVTASTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 179 PPSLVGALGSLAGTG----------------------------------------------------------------- 193
Cdd:PRK12806  241 GTQAVGAIGGTAGDTynltingvaiytnldvataltnsdlrdaingvsnqtgvvaslnggnmtltaadgrnitvtesgtg 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 194 ------------------------------------------------------STPTSTAGDARLSMAAIDTALDLVNN 219
Cdd:PRK12806  321 ftagtdgltvtggafdgalrgtlsisavdtiaiggtvaniglsaniskdtvgidSLDVSTASGAQTAIKRIDAALNSVNS 400

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1592995637 220 TRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK12806  401 NRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474
PRK08026 PRK08026
FliC/FljB family flagellin;
1-262 1.68e-47

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 166.07  E-value: 1.68e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK08026    1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTVFQVGANTGADNQITI 160
Cdd:PRK08026   81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGETITIDL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 161 SAVDlSDA---AALNVDG-------ATTPPSLVGALGSLAGTGsTPTSTAGDARLSMAAIDTALDLVNN-------TRAT 223
Cdd:PRK08026  161 KKID-SDTlglDGFNVNGkgtvantAATVSDLTAAGATLDTTG-LYDVKTKNAALTTADALAKLGDGDKvtatatgGDYT 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1592995637 224 FGAAQNRFEA--VISNLQVAAENTSAARSRIMDADFAAETA 262
Cdd:PRK08026  239 YNAKSGKYQAadLAATLTPDVGGTAGASYTIKDGTYEVNVD 279
PRK12803 PRK12803
flagellin; Provisional
 4-293 1.15e-41

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 146.49  E-value: 1.15e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   4 IINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALG 83
Cdd:PRK12803    2 IINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  84 KLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTV------------------ 145
Cdd:PRK12803   82 EVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQnvrtaeelgmqpakintp 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 146 -------------FQVGANTGADNQITISAVDLSDAAA-------------LNVDGATTPPSLVGALGSLAGTGSTPTST 199
Cdd:PRK12803  162 aslsgsqaswtlrVHVGANQDEAIAVNIYAANVANLFSgegaqqaapvqegAQQEGAQAAPAPAAAPAQGGVNSPVNVTT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 200 AGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVA 279
Cdd:PRK12803  242 TVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIA 321

                         330
                  ....*....|....
gi 1592995637 280 QANQLPQSVLKLIQ 293
Cdd:PRK12803  322 QANQVPQYVLSLLR 335
PRK12805 PRK12805
FliC/FljB family flagellin;
5-292 2.77e-39

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 139.23  E-value: 2.77e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK12805    3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSptvfqVGANTGADNQITISAVD 164
Cdd:PRK12805   83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTA-----TGAATQVSIQASDKAND 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 165 LSDAAALNVDGATTPPSLVGALGSLAGTGSTPTSTAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAEN 244
Cdd:PRK12805  158 LINIDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIA 237

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1592995637 245 TSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLI 292
Cdd:PRK12805  238 TKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-139 2.95e-35

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 123.99  E-value: 2.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLN 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLA 135
PRK12808 PRK12808
flagellin; Provisional
 5-227 1.63e-30

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 119.29  E-value: 1.63e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTVFQVGANTGADNQITIsavD 164
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSINIQTLDSSDGDKQIGI---D 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1592995637 165 LSDAA--ALNVDGATTPPSLVGALGSLAGTGSTPTSTAGDARLSMAAIDTALDLVNNTRATFGAA 227
Cdd:PRK12808  160 LKSATleALGINDLSIGANTDIEAVSTKIAALDKNTIAKATVEAKAAFDKAKDDTKAEDSNILDA 224
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 5-284 1.05e-27

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 108.97  E-value: 1.05e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPT-------------------- 144
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDtppfsedeggevtyngdggq 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 145 -VFQVGANTGADNQITISAVDLSDAAALNVDGATTpPSLVGALGSLAGTGSTPTSTAGDARlSMAAIDTALDLVNNTRAT 223
Cdd:TIGR02550 162 rKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTG-DDLIDALKKLEDALSSGDAKAALSA-SLNDLDKALDNVLSARAE 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1592995637 224 FGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQL 284
Cdd:TIGR02550 240 VGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQL 300
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 5-280 2.63e-27

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 107.39  E-value: 2.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK07701    3 VTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIvTSTSFNGRQLLNSSSPTV--FQVGAN---TGADNQIT 159
Cdd:PRK07701   83 ATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQI-ANTQYNGRYIFNGTKTDTppVTDDGDnieNSTDSGDI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 160 ISAVDLSDAAALNVDG-------ATTPPSLVGALGSLAGTGSTPTSTAGDARLSmaAIDTALDLVNNTRATFGAAQNRFE 232
Cdd:PRK07701  162 EFEIAKGNTINVNVPGdkafggqSGGGSNLFEMLDNLENALDSGDTQGVSNLLS--DIDQHIDNVLAVRAELGARSNRLE 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1592995637 233 AVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQ 280
Cdd:PRK07701  240 LIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGAR 287
PRK13588 PRK13588
flagellin B; Provisional
 1-195 1.15e-24

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 103.02  E-value: 1.15e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK13588    1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS-SPTVFQVGANTGADNQIT 159
Cdd:PRK13588   81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSfSNKEFQIGAYSNTTVKAS 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1592995637 160 ISAVDlSDAAALnVDGATTPPSLVGALGSLAGTGST 195
Cdd:PRK13588  161 IGATS-SDKIGH-VRMETSSFSGEGMLASAAAQNLT 194
PRK13589 PRK13589
flagellin A;
1-166 8.00e-24

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 100.87  E-value: 8.00e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK13589    1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS-SPTVFQVGANTGADNQIT 159
Cdd:PRK13589   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNfTNQEFQIGASSNQTIKAT 160


                  ....*..
gi 1592995637 160 ISAVDLS 166
Cdd:PRK13589  161 IGATQSS 167
PRK12584 PRK12584
flagellin A; Reviewed
 1-150 4.37e-22

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 95.75  E-value: 4.37e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK12584    1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS-SPTVFQVGA 150
Cdd:PRK12584   81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQfTNKEFQVGA 151
PRK08411 PRK08411
flagellin; Reviewed
 1-162 4.45e-22

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 95.83  E-value: 4.45e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSS-SPTVFQVGANTGADNQIT 159
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNfTNQEFQIGASSNQTVKAT 160


                  ...
gi 1592995637 160 ISA 162
Cdd:PRK08411  161 IGA 163
PRK08026 PRK08026
FliC/FljB family flagellin;
148-293 3.38e-21

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 93.27  E-value: 3.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 148 VGANTGADNQITISAVD-----LSDAAALNVDGATTPPSLVGALGSLAGTGSTPTSTAGDARLS---MAAIDTALDLVNN 219
Cdd:PRK08026  375 YDEITGAISATTTYYTAkdgttKTAANKLGGADGKTEVVTIDGKTYVASDGKQTTLAEAAATTTenpLAALDAAIASIDK 454

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1592995637 220 TRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK08026  455 FRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 207-292 8.35e-19

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 78.91  E-value: 8.35e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 207 MAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQ 286
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 1592995637 287 SVLKLI 292
Cdd:pfam00700  81 SLLNLL 86
PRK06663 PRK06663
flagellar hook-associated protein 3;
5-137 1.18e-14

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 73.57  E-value: 1.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK06663    4 VSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQS 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQL 137
Cdd:PRK06663   84 ITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSI 136
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 5-292 2.89e-14

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 71.59  E-value: 2.89e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAG------LAIAERMNAQVRGmNVAMRNANdgismAQTA 78
Cdd:PRK07192    3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIAsarlleLSREQSNNSQYAD-NIANLSNS-----LNNQ 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  79 EGALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQL----LNSSSPTVFQVGANT-- 152
Cdd:PRK07192   77 EGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLfsgtASNTQPITFDAAGGTyt 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 153 --GADNQITIsAVDLSDAAALNVDGA----TTPPSLVGALGSLAGTGSTPTSTAGDARL------SMAAIDTALDLVNNT 220
Cdd:PRK07192  157 ynGNSDQRQV-QVGEGVQMPVNVTGQsvfqGGGLDVFNTLDKLIDLLETPALPAADAALtaavdeALGAIDDALDNVLTV 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1592995637 221 RATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLpqSVLKLI 292
Cdd:PRK07192  236 RTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINSL--SLFNLI 305
PRK08411 PRK08411
flagellin; Reviewed
 207-293 1.71e-12

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 67.32  E-value: 1.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 207 MAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQ 286
Cdd:PRK08411  486 MDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQ 565


                  ....*..
gi 1592995637 287 SVLKLIQ 293
Cdd:PRK08411  566 NVLRLLQ 572
PRK13589 PRK13589
flagellin A;
198-293 3.99e-12

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 66.20  E-value: 3.99e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 198 STAGDARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAM 277
Cdd:PRK13589  481 TTLKGAMAVMDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYA 560

                          90
                  ....*....|....*.
gi 1592995637 278 VAQANQLPQSVLKLIQ 293
Cdd:PRK13589  561 MSQANAVQQNVLKLLQ 576
PRK13588 PRK13588
flagellin B; Provisional
 191-293 7.36e-12

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 65.27  E-value: 7.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 191 GTGSTPTSTAGdARLSMAAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQIL 270
Cdd:PRK13588  413 GIGAGVTSLKG-AMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNIL 491

                          90       100
                  ....*....|....*....|...
gi 1592995637 271 QQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK13588  492 AQSGSFAMAQANAVQQNVLRLLQ 514
PRK12687 PRK12687
flagellin; Reviewed
 7-293 1.34e-10

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 60.83  E-value: 1.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   7 TNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGAL---- 82
Cdd:PRK12687    6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALtsvv 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  83 GKLSENLQRMRELAVQAandTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLN------SSSPTVFQVGANTGADN 156
Cdd:PRK12687   86 GDSKSGLTALKAKLVAA---REPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSvdsspsSYNATKSVVSSFTRVGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 157 QITISAVDLS-DAAALNVDGATTPPSLV---------GALGSLAGTGSTPTSTAGDARLS--MAAIDTALDLVNNTRATF 224
Cdd:PRK12687  163 TVAIKTIDVNiAKLALYDTNGSSTTGILdktvtvgtaTASVSSIDIHLLTDSATDLTKLDgyIGIVDQALGSVTQASADL 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1592995637 225 GAAQNRFEAVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ 293
Cdd:PRK12687  243 GATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 5-137 4.71e-10

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 59.54  E-value: 4.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK08870    3 ISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGS 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQL 137
Cdd:PRK08870   83 VEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYL 135
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
13-142 1.69e-07

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 52.27  E-value: 1.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  13 NAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGKLSENLQRM 92
Cdd:PRK14692   11 NSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDF 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1592995637  93 RELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIvTSTSFNGRQLLNSSS 142
Cdd:PRK14692   91 KVKVTQAASDSNSQTSREAIAKELERIKESIVQL-ANTSVNGQYLFAGSQ 139
flgL PRK12717
flagellar hook-associated protein 3;
13-142 2.64e-06

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 48.58  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  13 NAQRNLntsqSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGKLSENLQRM 92
Cdd:PRK12717   15 NYQRNY----SNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRA 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1592995637  93 RELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSS 142
Cdd:PRK12717   91 RELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSK 140
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 13-141 1.46e-05

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 46.35  E-value: 1.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  13 NAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGKLSENLQRM 92
Cdd:PRK08412   11 QMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEAF 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1592995637  93 RELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIvTSTSFNGRQLLNSS 141
Cdd:PRK08412   91 KTKLIQAANDVHSETSREAIANDLEALKEHMINL-ANTSIGGEFLFSGS 138
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 5-139 1.87e-04

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 42.87  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDD--AAGLAIAERMNAQVRGMNVAMRNANDGISMAQTaeGAL 82
Cdd:PRK12718    3 LSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDplAAALAVNVSQTSSMNSNYDANRKQAEQALGAQT--NTL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1592995637  83 GKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLN 139
Cdd:PRK12718   81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFS 137
PRK12688 PRK12688
flagellin; Reviewed
 1-203 5.50e-04

flagellin; Reviewed


Pssm-ID: 171664 [Multi-domain]  Cd Length: 751  Bit Score: 41.40  E-value: 5.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   1 MASIINTNLVSLNAQRNLntsqssLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEG 80
Cdd:PRK12688    6 LSASVRQNLLSLQSTADL------LATTQSRLSTGKKVNSALDNPTNFFTAQSLDNRASDINNLLDGIGNGVQILQAANT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  81 ALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGRQLLNSSSPTVFQVGANTGAdNQITI 160
Cdd:PRK12688   80 GITSLQKLIDSAKSIANQALQTVVGYSTKSNVSTTISGATADDLRGTTSYASATASSNVLYDGAAGGATAATGA-TTLGG 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1592995637 161 SAVDLSDAAALNVDGATtppSLVGALGSLAGTGSTPTSTAGDA 203
Cdd:PRK12688  159 TAGSLAGTGATAGDGTT---ALTGTITLIATNGTTATGLLGNA 198
flgL PRK08073
flagellar hook-associated protein 3;
5-273 2.04e-03

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 39.19  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGK 84
Cdd:PRK08073    3 VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTLSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637  85 LSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARiVTSTSFNGRQLLNSSS---PTVFQVGANTGADNQITIS 161
Cdd:PRK08073   83 MSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVY-LANTKEQGRYVFGGDSaekKPFTEDGTYQGGTEDVNWR 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637 162 AVD------LSDAAALNVDGATTPPSLVGALGSlagtgstptstaGDARLSMAAIDT---ALDLVNNTRATFGAAQNRFE 232
Cdd:PRK08073  162 LNDgyevkaFRNGEALLTPVINTLKKMVDAMQT------------GDQKALQPLLEEnkkNLDIIINRTTEVGGTMNTVE 229

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1592995637 233 AVISNLQVAAENTSAARSRIMDADFAAETANLSRTQILQQA 273
Cdd:PRK08073  230 TFKTILSEQNLALQENRKEIEDVDLAVAISDLAYINATYEA 270
flgL PRK08027
flagellar hook-filament junction protein FlgL;
5-135 5.08e-03

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 37.81  E-value: 5.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1592995637   5 INTNLVSLNAQRNLNTSQSSLSTTMQRLSSGLRVNSAKDD--AAGLAI----AERMNAQvrgMNVAMRNANDGISMAqta 78
Cdd:PRK08027    3 LSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDpiAASQAVvlsqAQAQNSQ---YTLARTFATQKVSLE--- 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1592995637  79 EGALGKLSENLQRMRELAVQAANDTNGTTDRGSLDKEFKQLSQEIARIVTSTSFNGR 135
Cdd:PRK08027   77 ESVLSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGR 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH