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Conserved domains on  [gi|1593644831|gb|TDG92414|]
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hypothetical protein C5L29_003182 [Lactiplantibacillus pentosus]

Protein Classification

DUF3284 domain-containing protein( domain architecture ID 10569462)

DUF3284 domain-containing protein belongs to SRPBCC (START/RHOalphaC/PITP/Bet v1/CoxG/CalC) family and may have a deep hydrophobic ligand-binding pocket

CATH:  3.30.530.20
PubMed:  18922149
SCOP:  3000738

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3284 pfam11687
Domain of unknown function (DUF3284); This family of proteins with unknown function appears to ...
 2-114 8.19e-38

Domain of unknown function (DUF3284); This family of proteins with unknown function appears to be restricted to Firmicutes.


:

Pssm-ID: 463322  Cd Length: 115  Bit Score: 124.30  E-value: 8.19e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593644831   2 QIKLTLNAPVDYLYQQLIDSARADIQQQTGRPAPRQSLQGYEYAKQWSNGLTGQLKITHAQPGVHYAYELETPRDHYGVD 81
Cdd:pfam11687   1 KISKTLNVSAEDFFDKLIDSVLYDIKQATGKTLSRDQLKGYEYSKTFKNKSRAKVEITEFVENSKYQFKTSSNRGTFIVR 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1593644831  82 YQFATTDDGqQTVLEYAETFLGKDRKTNANNKL 114
Cdd:pfam11687  81 YEIEPLDDG-KTEVTYEEKMESKGFFQKLNDKL 112
 
Name Accession Description Interval E-value
DUF3284 pfam11687
Domain of unknown function (DUF3284); This family of proteins with unknown function appears to ...
 2-114 8.19e-38

Domain of unknown function (DUF3284); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 463322  Cd Length: 115  Bit Score: 124.30  E-value: 8.19e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593644831   2 QIKLTLNAPVDYLYQQLIDSARADIQQQTGRPAPRQSLQGYEYAKQWSNGLTGQLKITHAQPGVHYAYELETPRDHYGVD 81
Cdd:pfam11687   1 KISKTLNVSAEDFFDKLIDSVLYDIKQATGKTLSRDQLKGYEYSKTFKNKSRAKVEITEFVENSKYQFKTSSNRGTFIVR 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1593644831  82 YQFATTDDGqQTVLEYAETFLGKDRKTNANNKL 114
Cdd:pfam11687  81 YEIEPLDDG-KTEVTYEEKMESKGFFQKLNDKL 112
 
Name Accession Description Interval E-value
DUF3284 pfam11687
Domain of unknown function (DUF3284); This family of proteins with unknown function appears to ...
 2-114 8.19e-38

Domain of unknown function (DUF3284); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 463322  Cd Length: 115  Bit Score: 124.30  E-value: 8.19e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1593644831   2 QIKLTLNAPVDYLYQQLIDSARADIQQQTGRPAPRQSLQGYEYAKQWSNGLTGQLKITHAQPGVHYAYELETPRDHYGVD 81
Cdd:pfam11687   1 KISKTLNVSAEDFFDKLIDSVLYDIKQATGKTLSRDQLKGYEYSKTFKNKSRAKVEITEFVENSKYQFKTSSNRGTFIVR 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1593644831  82 YQFATTDDGqQTVLEYAETFLGKDRKTNANNKL 114
Cdd:pfam11687  81 YEIEPLDDG-KTEVTYEEKMESKGFFQKLNDKL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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