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Conserved domains on  [gi|1596947127|gb|TDW03001|]
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hypothetical protein EDB45_12820 [Vibrio crassostreae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS5_2 super family cl41331
IS5 family transposase;
42-97 3.24e-20

IS5 family transposase;


The actual alignment was detected with superfamily member NF033579:

Pssm-ID: 468096 [Multi-domain]  Cd Length: 287  Bit Score: 81.95  E-value: 3.24e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1596947127  42 DAELSLSTVTDGEVLPNLLKQTRRSILEVAGDGAYDTRACHAAIKIKRAVALIPPR 97
Cdd:NF033579  155 AVEVTTNKVHDAKVLPDLLRQIPEDIDSVLADGAYDTKKCHEAIRERGARPLIPPR 210
 
Name Accession Description Interval E-value
transpos_IS5_2 NF033579
IS5 family transposase;
42-97 3.24e-20

IS5 family transposase;


Pssm-ID: 468096 [Multi-domain]  Cd Length: 287  Bit Score: 81.95  E-value: 3.24e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1596947127  42 DAELSLSTVTDGEVLPNLLKQTRRSILEVAGDGAYDTRACHAAIKIKRAVALIPPR 97
Cdd:NF033579  155 AVEVTTNKVHDAKVLPDLLRQIPEDIDSVLADGAYDTKKCHEAIRERGARPLIPPR 210
transpos_IS5_3 NF033580
IS5 family transposase;
41-97 4.42e-03

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 34.47  E-value: 4.42e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1596947127  41 HDAELSLSTVtdgEVLPNLLKQTRRSILevaGDGAYDTRACHAAIKIKRAVALIPPR 97
Cdd:NF033580  151 HDSKGALPLL---DGLPVLRPPRPKHLL---ADKGYDSDALRAALRERGAVPVIPRR 201
 
Name Accession Description Interval E-value
transpos_IS5_2 NF033579
IS5 family transposase;
42-97 3.24e-20

IS5 family transposase;


Pssm-ID: 468096 [Multi-domain]  Cd Length: 287  Bit Score: 81.95  E-value: 3.24e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1596947127  42 DAELSLSTVTDGEVLPNLLKQTRRSILEVAGDGAYDTRACHAAIKIKRAVALIPPR 97
Cdd:NF033579  155 AVEVTTNKVHDAKVLPDLLRQIPEDIDSVLADGAYDTKKCHEAIRERGARPLIPPR 210
transpos_IS5_3 NF033580
IS5 family transposase;
41-97 4.42e-03

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 34.47  E-value: 4.42e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1596947127  41 HDAELSLSTVtdgEVLPNLLKQTRRSILevaGDGAYDTRACHAAIKIKRAVALIPPR 97
Cdd:NF033580  151 HDSKGALPLL---DGLPVLRPPRPKHLL---ADKGYDSDALRAALRERGAVPVIPRR 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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