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Conserved domains on  [gi|1601191437|gb|TFB63369|]
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klebicin B-related nuclease bacteriocin [Klebsiella pneumoniae subsp. pneumoniae]

Protein Classification

S-type pyocin domain-containing protein( domain architecture ID 10536576)

S-type pyocin domain-containing protein; S-type pyocins are colicin-like, protease-sensitive proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pyocin_S pfam06958
S-type Pyocin; This family represents a conserved region approximately 180 residues long ...
 500-639 2.54e-30

S-type Pyocin; This family represents a conserved region approximately 180 residues long within bacterial S-type pyocins. Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity.


:

Pssm-ID: 399737  Cd Length: 139  Bit Score: 116.31  E-value: 2.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1601191437 500 LNKAADQKTSVSMPVRGRLVMNDSGILDVQLVKTNTAG---AVKVARAVLDKETGYWGytlPAVADVPAQTIFVSPADAl 576
Cdd:pfam06958   1 LEEIAAQMGTVDLPVRLRIIDDEDGRLKVYGVHTGGAGvpdRVPVRAATLDAETGSYE---FTADGAPGPTILWTPASP- 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1601191437 577 GANGPLTLSGPVPLPERILHTGDQISAPQATDKTVTPVADDLDFDDIILVFPPESGLKPLYVM 639
Cdd:pfam06958  77 PGNGPPSTSSPAAPPDTPVITGTPIPPVVGEVIEPYPAPDERDFRDYILVFPADSGLPPLYVV 139
 
Name Accession Description Interval E-value
Pyocin_S pfam06958
S-type Pyocin; This family represents a conserved region approximately 180 residues long ...
 500-639 2.54e-30

S-type Pyocin; This family represents a conserved region approximately 180 residues long within bacterial S-type pyocins. Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity.


Pssm-ID: 399737  Cd Length: 139  Bit Score: 116.31  E-value: 2.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1601191437 500 LNKAADQKTSVSMPVRGRLVMNDSGILDVQLVKTNTAG---AVKVARAVLDKETGYWGytlPAVADVPAQTIFVSPADAl 576
Cdd:pfam06958   1 LEEIAAQMGTVDLPVRLRIIDDEDGRLKVYGVHTGGAGvpdRVPVRAATLDAETGSYE---FTADGAPGPTILWTPASP- 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1601191437 577 GANGPLTLSGPVPLPERILHTGDQISAPQATDKTVTPVADDLDFDDIILVFPPESGLKPLYVM 639
Cdd:pfam06958  77 PGNGPPSTSSPAAPPDTPVITGTPIPPVVGEVIEPYPAPDERDFRDYILVFPADSGLPPLYVV 139
 
Name Accession Description Interval E-value
Pyocin_S pfam06958
S-type Pyocin; This family represents a conserved region approximately 180 residues long ...
 500-639 2.54e-30

S-type Pyocin; This family represents a conserved region approximately 180 residues long within bacterial S-type pyocins. Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity.


Pssm-ID: 399737  Cd Length: 139  Bit Score: 116.31  E-value: 2.54e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1601191437 500 LNKAADQKTSVSMPVRGRLVMNDSGILDVQLVKTNTAG---AVKVARAVLDKETGYWGytlPAVADVPAQTIFVSPADAl 576
Cdd:pfam06958   1 LEEIAAQMGTVDLPVRLRIIDDEDGRLKVYGVHTGGAGvpdRVPVRAATLDAETGSYE---FTADGAPGPTILWTPASP- 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1601191437 577 GANGPLTLSGPVPLPERILHTGDQISAPQATDKTVTPVADDLDFDDIILVFPPESGLKPLYVM 639
Cdd:pfam06958  77 PGNGPPSTSSPAAPPDTPVITGTPIPPVVGEVIEPYPAPDERDFRDYILVFPADSGLPPLYVV 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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