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Conserved domains on  [gi|1606100952|gb|TFQ95507|]
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cyd operon protein YbgE [Escherichia coli]

Protein Classification

cyd operon protein YbgE( domain architecture ID 10013571)

cyd operon protein YbgE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10588 PRK10588
hypothetical protein; Provisional
 1-97 5.82e-55

hypothetical protein; Provisional


:

Pssm-ID: 236721  Cd Length: 97  Bit Score: 165.30  E-value: 5.82e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  1 MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80
Cdd:PRK10588   1 MSKIIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFAAKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80

                         90
                 ....*....|....*..
gi 1606100952 81 PLLADIVLIVGLIFFFF 97
Cdd:PRK10588  81 PLPADIVLIVGLIFFFF 97
 
Name Accession Description Interval E-value
PRK10588 PRK10588
hypothetical protein; Provisional
 1-97 5.82e-55

hypothetical protein; Provisional


Pssm-ID: 236721  Cd Length: 97  Bit Score: 165.30  E-value: 5.82e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  1 MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80
Cdd:PRK10588   1 MSKIIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFAAKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80

                         90
                 ....*....|....*..
gi 1606100952 81 PLLADIVLIVGLIFFFF 97
Cdd:PRK10588  81 PLPADIVLIVGLIFFFF 97
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-97 1.64e-42

Predicted membrane protein, encoded in cydAB operon [Function unknown];


Pssm-ID: 443004  Cd Length: 98  Bit Score: 133.87  E-value: 1.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  1 MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80
Cdd:COG3790    1 MSDMIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFS 80

                         90
                 ....*....|....*..
gi 1606100952 81 PLLADIVLIVGLIFFFF 97
Cdd:COG3790   81 PLLAYLILIAGLYYFFL 97
cyd_oper_ybgE TIGR02112
cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 ...
 5-97 1.06e-39

cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport]


Pssm-ID: 131167  Cd Length: 93  Bit Score: 126.70  E-value: 1.06e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  5 IATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLA 84
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80

                         90
                 ....*....|...
gi 1606100952 85 DIVLIVGLIFFFF 97
Cdd:TIGR02112 81 YIILIYLLIVFFA 93
Cyd_oper_YbgE pfam09600
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 17-92 1.23e-26

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


Pssm-ID: 430707  Cd Length: 76  Bit Score: 93.05  E-value: 1.23e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1606100952 17 LRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGL 92
Cdd:pfam09600  1 LRALSLLLALALAGCVLWDPNRFAAATGGLDHWLAPLLIWAVCAGFIHGVGFRPRRWIWRLLFSPLLAWLILIYGL 76
 
Name Accession Description Interval E-value
PRK10588 PRK10588
hypothetical protein; Provisional
 1-97 5.82e-55

hypothetical protein; Provisional


Pssm-ID: 236721  Cd Length: 97  Bit Score: 165.30  E-value: 5.82e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  1 MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80
Cdd:PRK10588   1 MSKIIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFAAKTSSLEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80

                         90
                 ....*....|....*..
gi 1606100952 81 PLLADIVLIVGLIFFFF 97
Cdd:PRK10588  81 PLPADIVLIVGLIFFFF 97
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-97 1.64e-42

Predicted membrane protein, encoded in cydAB operon [Function unknown];


Pssm-ID: 443004  Cd Length: 98  Bit Score: 133.87  E-value: 1.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  1 MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFC 80
Cdd:COG3790    1 MSDMIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFS 80

                         90
                 ....*....|....*..
gi 1606100952 81 PLLADIVLIVGLIFFFF 97
Cdd:COG3790   81 PLLAYLILIAGLYYFFL 97
cyd_oper_ybgE TIGR02112
cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 ...
 5-97 1.06e-39

cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport]


Pssm-ID: 131167  Cd Length: 93  Bit Score: 126.70  E-value: 1.06e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1606100952  5 IATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLA 84
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80

                         90
                 ....*....|...
gi 1606100952 85 DIVLIVGLIFFFF 97
Cdd:TIGR02112 81 YIILIYLLIVFFA 93
Cyd_oper_YbgE pfam09600
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 17-92 1.23e-26

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


Pssm-ID: 430707  Cd Length: 76  Bit Score: 93.05  E-value: 1.23e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1606100952 17 LRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGL 92
Cdd:pfam09600  1 LRALSLLLALALAGCVLWDPNRFAAATGGLDHWLAPLLIWAVCAGFIHGVGFRPRRWIWRLLFSPLLAWLILIYGL 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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