|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
25-600 |
0e+00 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 1368.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 25 VIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLIS 104
Cdd:PRK11742 1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 105 IDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFE 184
Cdd:PRK11742 81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 185 LTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 264
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 265 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQ 344
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 345 KIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGT 424
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 425 TGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPP 504
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGN-GDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPP 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 505 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDL 584
Cdd:PRK11742 480 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDL 559
|
570
....*....|....*.
gi 1608029296 585 IVYLGSIDFVMSDVDR 600
Cdd:PRK11742 560 IVYLGSIDFVMSDVDR 575
|
|
| NuoD |
TIGR01962 |
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ... |
214-600 |
0e+00 |
|
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898 Cd Length: 386 Bit Score: 677.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 214 DFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEK 293
Cdd:TIGR01962 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 294 LAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLP 373
Cdd:TIGR01962 81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 374 RGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFE 453
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 454 IPVGGGVsDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANES 533
Cdd:TIGR01962 241 VPVGGNG-DCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEV 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608029296 534 FQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:TIGR01962 320 YVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
|
|
| NuoD |
COG0649 |
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ... |
211-600 |
0e+00 |
|
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain] Cd Length: 390 Bit Score: 652.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 211 ENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLA 290
Cdd:COG0649 2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 291 VEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAH 370
Cdd:COG0649 82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 371 DLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF 450
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 451 DFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPA 530
Cdd:COG0649 242 DFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPA 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 531 NESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:COG0649 321 GEVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
|
|
| Complex1_49kDa |
pfam00346 |
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; |
330-600 |
2.85e-153 |
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772 Cd Length: 270 Bit Score: 441.05 E-value: 2.85e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQ 409
Cdd:pfam00346 1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 410 GVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMP 489
Cdd:pfam00346 81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 490 EGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHL 569
Cdd:pfam00346 160 EGPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANL 239
|
250 260 270
....*....|....*....|....*....|.
gi 1608029296 570 QQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:pfam00346 240 QALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
25-600 |
0e+00 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 1368.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 25 VIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLIS 104
Cdd:PRK11742 1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 105 IDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFE 184
Cdd:PRK11742 81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 185 LTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 264
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 265 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQ 344
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 345 KIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGT 424
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 425 TGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPP 504
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGN-GDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPP 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 505 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDL 584
Cdd:PRK11742 480 KERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDL 559
|
570
....*....|....*.
gi 1608029296 585 IVYLGSIDFVMSDVDR 600
Cdd:PRK11742 560 IVYLGSIDFVMSDVDR 575
|
|
| PRK13292 |
PRK13292 |
NADH-quinone oxidoreductase subunit B/C/D; |
27-600 |
0e+00 |
|
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain] Cd Length: 788 Bit Score: 694.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 27 GELRNRFGpDAFTVQATRTGVPVVWIKREQLLEVGDFLKK-LPKPYVMLFDLHGMDERLRTHREGLPaaDFSVFYHLISI 105
Cdd:PRK13292 226 GELEGAFG-DDVRLDEGATDMLTYRCPPELVPEVLRHLKKrASSPFRRLEDLAAVDESCRRDREKFP--DFTVNYHLLSF 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 106 DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFEL 185
Cdd:PRK13292 303 DTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRATEMPPYTR 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 186 TKAKqdlemealTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSW 265
Cdd:PRK13292 383 DDAR--------RLQPLPAGDFFDRVDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHW 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 266 HSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQK 345
Cdd:PRK13292 455 NQFIPYTDRIDYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREK 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 346 IYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTT 425
Cdd:PRK13292 535 IFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGIS 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 426 GAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPK 505
Cdd:PRK13292 615 GPNLRACGLAWDLRKKMPYGGYDRFDFEVPTAEG-GDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYVLPQK 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 506 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLI 585
Cdd:PRK13292 694 RDTLKDIESLIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFL 773
|
570
....*....|....*
gi 1608029296 586 VYLGSIDFVMSDVDR 600
Cdd:PRK13292 774 AIIGSIDFVLADLDR 788
|
|
| NuoD |
TIGR01962 |
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ... |
214-600 |
0e+00 |
|
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898 Cd Length: 386 Bit Score: 677.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 214 DFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEK 293
Cdd:TIGR01962 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 294 LAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLP 373
Cdd:TIGR01962 81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 374 RGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFE 453
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 454 IPVGGGVsDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANES 533
Cdd:TIGR01962 241 VPVGGNG-DCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEV 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608029296 534 FQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:TIGR01962 320 YVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
|
|
| NuoD |
COG0649 |
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ... |
211-600 |
0e+00 |
|
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain] Cd Length: 390 Bit Score: 652.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 211 ENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLA 290
Cdd:COG0649 2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 291 VEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAH 370
Cdd:COG0649 82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 371 DLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF 450
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 451 DFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPA 530
Cdd:COG0649 242 DFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPA 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 531 NESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:COG0649 321 GEVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
|
|
| PRK06075 |
PRK06075 |
NADH-quinone oxidoreductase subunit D; |
218-600 |
2.42e-168 |
|
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain] Cd Length: 392 Bit Score: 484.27 E-value: 2.42e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 218 LNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGI 297
Cdd:PRK06075 9 LNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEKLLGI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 298 TVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWD 377
Cdd:PRK06075 89 EVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 378 RLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVG 457
Cdd:PRK06075 169 EDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFDVPVG 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 458 GGvSDCYTRVMLKVEELRQSLRILEQCLNNM--PEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQ 535
Cdd:PRK06075 249 KN-GDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAGEVYA 327
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1608029296 536 MIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:PRK06075 328 AVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
|
|
| Complex1_49kDa |
pfam00346 |
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; |
330-600 |
2.85e-153 |
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772 Cd Length: 270 Bit Score: 441.05 E-value: 2.85e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 330 VGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQ 409
Cdd:pfam00346 1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 410 GVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMP 489
Cdd:pfam00346 81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTE-GDCYDRYLVRMEEMRQSLRIIRQCLDKLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 490 EGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHL 569
Cdd:pfam00346 160 EGPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANL 239
|
250 260 270
....*....|....*....|....*....|.
gi 1608029296 570 QQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:pfam00346 240 QALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
|
|
| PRK12322 |
PRK12322 |
NADH-quinone oxidoreductase subunit D; |
216-600 |
1.59e-135 |
|
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain] Cd Length: 366 Bit Score: 399.85 E-value: 1.59e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 216 MFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLA 295
Cdd:PRK12322 7 MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 296 GITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRG 375
Cdd:PRK12322 87 GLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 376 WDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIP 455
Cdd:PRK12322 167 WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 456 VgGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPE-GPFKADHPLTTPPPKertlqhietlithflqvswgpvmpaNESF 534
Cdd:PRK12322 247 V-GSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKeGPVLAKVPKIIKAPK-------------------------GEAY 300
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1608029296 535 QMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:PRK12322 301 VRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
|
|
| PRK07415 |
PRK07415 |
NAD(P)H-quinone oxidoreductase subunit H; Validated |
216-600 |
2.61e-108 |
|
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain] Cd Length: 394 Bit Score: 330.93 E-value: 2.61e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 216 MFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLA 295
Cdd:PRK07415 11 MVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 296 GITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRM-HPAWFRIGGVAHDLPR 374
Cdd:PRK07415 91 NIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGVAADLPY 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 375 GWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEI 454
Cdd:PRK07415 171 GWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 455 PVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPF---KADHPLTTPPPKERTLQHietlitHFLQVSWGPV--MP 529
Cdd:PRK07415 251 AWETE-GDCLARYRVRIEEMRESVKIIRQACKGIPGGPYenlEAKRMAEGKKSEWNGFDY------QYVAKKVAPTfkIP 323
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608029296 530 ANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:PRK07415 324 NGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
|
|
| ndhH |
CHL00017 |
NADH dehydrogenase subunit 7 |
206-600 |
9.42e-97 |
|
NADH dehydrogenase subunit 7
Pssm-ID: 176960 Cd Length: 393 Bit Score: 301.23 E-value: 9.42e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 206 MKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEM 285
Cdd:CHL00017 1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 286 PYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRI 365
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 366 GGVAHDLPRGW-DRLLrEFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPY 444
Cdd:CHL00017 161 GGVAADLPYGWiDKCL-DFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHY 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 445 SGYENFDFEIPVGGGvSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIEtliTHFLQVSW 524
Cdd:CHL00017 240 ECYDEFDWEVQWQKE-GDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFE---YRFISKKP 315
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608029296 525 GPV--MPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
Cdd:CHL00017 316 SPTfeLSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
|
|
| HycE2 |
COG3261 |
Ni,Fe-hydrogenase III large subunit [Energy production and conversion]; |
80-600 |
6.10e-86 |
|
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain] Cd Length: 479 Bit Score: 275.70 E-value: 6.10e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 80 MDERLRTHREGLPAADFsVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIM 159
Cdd:COG3261 4 AALALLLALDLAAGGAL-FGLRLEAEDELLLLLLLAAGVLLLLPTPPPSSSAPAAAAARRERARERLGGEEGGGPPRRRL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 160 MPQTW----KGHPLRKDYPARATEFSPFEltkaKQDLEMEaltfkpeewGMKRGTenedfmfLNLGPNHPSAH--GAFRi 233
Cdd:COG3261 83 LLPDGwpplPPPPLRPPPPPRGPPPPPPE----EPEMKVE---------GEGVHE-------IPVGPVHAGLIepGHFR- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 234 vLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSEL 313
Cdd:COG3261 142 -FSVEGERILDLEIRLGYVHRGIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAAGIEVPPRAQYLRVILLEL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 314 FRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLAS 393
Cdd:COG3261 221 ERIHSHLLDLGALANDVGFETLFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQLKAILERLDELEEEVKE 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 394 YEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPV-GGGvsDCYTRVMLKVE 472
Cdd:COG3261 301 LVDLFLNDPSVLDRLVGTGVLSKEDARDLGAVGPVARASGVDRDVRRDHPYAAYDELDFKVVTeTEG--DVYARALVRLE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 473 ELRQSLRILEQCLNNMPEGPfkadhplttpppkertlqhietlithfLQVSWGPVMPANESFQMIEATKGINSYYLTSDG 552
Cdd:COG3261 379 EIFESLDLIRQALEKLPEGP---------------------------IRVPVPGLPPDGEGLGRVEAPRGELVHYVRTDG 431
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1608029296 553 STMSYRTRIRTPSYAHLQQIPAAIRGSLVSD--LIVylGSIDFVMSDVDR 600
Cdd:COG3261 432 DGRLERVKIRTPSFANWPALELALRGNIVADfpLIN--KSFDPCYSCTDR 479
|
|
| NuoC_fam |
TIGR01961 |
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ... |
48-177 |
2.98e-58 |
|
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]
Pssm-ID: 273897 [Multi-domain] Cd Length: 121 Bit Score: 190.91 E-value: 2.98e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 48 PVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDeRLRTHReglpaadFSVFYHLISIDRNRDIMLKVALAENDlHVPTF 127
Cdd:TIGR01961 1 LVVWIKKEQLLEVLTFLKDPALGFELLTDVSGVD-YPKEKR-------FEVVYHLLSIKKNRRIRLKVRLSEDD-PVPSL 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1608029296 128 TKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARA 177
Cdd:TIGR01961 72 TSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
|
|
| NuoC |
COG0852 |
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ... |
23-189 |
4.91e-58 |
|
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440613 [Multi-domain] Cd Length: 164 Bit Score: 191.58 E-value: 4.91e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 23 DPVIGELRNRFGpDAFTVQATRTGVPVVWIKREQLLEVGDFLKKlPKPYVMLFDLHGMDERLRTHReglpaadFSVFYHL 102
Cdd:COG0852 5 EELLEALEEKFG-DAVLEVEEARGELTLTVPPEDLVDVARFLRD-DLGFDHLSDLTGVDYPERGDR-------FEVVYHL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 103 ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSP 182
Cdd:COG0852 76 LSLTHNRRLRLKVFVPRDDPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVR 155
|
....*..
gi 1608029296 183 FELTKAK 189
Cdd:COG0852 156 YDEELKR 162
|
|
| Complex1_30kDa |
pfam00329 |
Respiratory-chain NADH dehydrogenase, 30 Kd subunit; |
50-179 |
3.14e-51 |
|
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
Pssm-ID: 459763 [Multi-domain] Cd Length: 121 Bit Score: 172.28 E-value: 3.14e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 50 VWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERlrthreglPAADFSVFYHLISIDRNRDIMLKVALaENDLHVPTFTK 129
Cdd:pfam00329 1 VTVDPEDLLEVARFLRDDELGFDHLSDLTGVDYP--------EEGRFEVVYHLLSITHNVRVRVKVPL-EDDPVVPSVTD 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1608029296 130 LFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATE 179
Cdd:pfam00329 72 IWPGANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
|
|
| PRK06074 |
PRK06074 |
NADH dehydrogenase subunit C; Provisional |
52-174 |
1.88e-35 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 235691 [Multi-domain] Cd Length: 189 Bit Score: 131.95 E-value: 1.88e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 52 IKREQLLEVGDFLKKLPKP-YVMLFDLHGMDERLRTHReglpaadFSVFYHLISIDRNRDIMLKVAlAENDLHVPTFTKL 130
Cdd:PRK06074 33 VPAEKILEVLTFLRDDPELrFEQLIDLTGVDYPERGKR-------FEVVYHLLSYKHNVRLRVKVR-APEDPVVPSVVDI 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1608029296 131 FPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYP 174
Cdd:PRK06074 105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFP 148
|
|
| PRK07785 |
PRK07785 |
NADH dehydrogenase subunit C; Provisional |
51-174 |
1.73e-33 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 181115 [Multi-domain] Cd Length: 235 Bit Score: 127.80 E-value: 1.73e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 51 WIKREQLLEVGDFLKKlpkpyvmlfdlhgmDERLR---------THREGLPAADFSVFYHLISIDRNRDIMLKVALAEND 121
Cdd:PRK07785 94 HVRREHLVEVAQTLRD--------------DPALRfelclgvsgVHYPHDTGRELHAVYHLTSITHNRRIRLEVAVPDAD 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1608029296 122 LHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYP 174
Cdd:PRK07785 160 PHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYP 212
|
|
| HycE1 |
COG3262 |
Ni,Fe-hydrogenase III component G [Energy production and conversion]; |
28-492 |
2.22e-32 |
|
Ni,Fe-hydrogenase III component G [Energy production and conversion];
Pssm-ID: 442493 [Multi-domain] Cd Length: 523 Bit Score: 131.23 E-value: 2.22e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 28 ELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLfdLHGMDERLRTHReglpaadFSVFYHLISIDR 107
Cdd:COG3262 6 ELRARFGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGGRLAA--LWGNDERELGGG-------FAVYYVFALEGE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 108 NRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTW-KG-HPLRKDYPAratefspfel 185
Cdd:COG3262 77 GALVTLKVSVPKDDPVFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGiYPLRKDFKG---------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 186 tkakqdlemEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSW 265
Cdd:COG3262 147 ---------GPRPAPAPAEEYFRPVEGEGIEVVVVGPVHAGIIEPGHFFFSVGGEIVIRLEELLYYVHKGEEKLEEGEEG 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 266 HSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQK 345
Cdd:COG3262 218 RAGLVLAEAAGGDSGAAAAAAAAAAAEAAAAAAIPPRAALLRLLRLLLERLELHLGLLGLGGLDAGGAGAAGAAALLRRR 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 346 IYDLVEAITGFRMHPAWFRIGGVAHDLPRG-------WDRLLREFLDWmpkrLASYEKAALQNTILKGRSQGVAAYGAKE 418
Cdd:COG3262 298 LERLLEALLLRRGRRGGGGGGGGGRDDDDLladlileLLLDLEEEEEE----LEELADLLSRLIDRLDTTGGLALKAAAA 373
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608029296 419 ALewGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGP 492
Cdd:COG3262 374 GG--VGGAAGRASGGRGDRRRRAPYAAYDDVDLRVVVLTVGDVDVRRARVREELEEISRLIIILLDLLLLGPGG 445
|
|
| PRK12494 |
PRK12494 |
NAD(P)H-quinone oxidoreductase subunit J; |
46-173 |
3.12e-29 |
|
NAD(P)H-quinone oxidoreductase subunit J;
Pssm-ID: 183557 [Multi-domain] Cd Length: 172 Bit Score: 113.90 E-value: 3.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 46 GVPVVWIKREQLLEVGDFLKKLPKPYVML---FDlhgmderlrthrEGlPAADFSVFYHLISI----DRNRDIMLKVALA 118
Cdd:PRK12494 39 GVEIIKVEPDFLLPIATALYAYGFNYLQCqggYD------------EG-PGKELVSFYHLIKVsdnaDKPREVRLKVFLP 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1608029296 119 ENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDY 173
Cdd:PRK12494 106 RDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
|
|
| PRK08491 |
PRK08491 |
NADH-quinone oxidoreductase subunit C; |
49-180 |
1.75e-28 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 181449 Cd Length: 263 Bit Score: 114.38 E-value: 1.75e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 49 VVWIKREQLLEVGDFLKKLPkpYVMLFDLHGMDerLRTHREGlpaadFSVFYHLISIDRNRDIMLKVALAENDlHVPTFT 128
Cdd:PRK08491 60 VIWIKKDDNFKVLKILKHLG--YECLSEMSAID--FLAKKGG-----FEVFYQLLSMSKRKRVRVKCFLKEKE-ALQSVS 129
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1608029296 129 KLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEF 180
Cdd:PRK08491 130 FLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKGDEF 181
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
29-173 |
7.74e-28 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 116.23 E-value: 7.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608029296 29 LRNRFGPDA---FTVQATRTGVPVVWIKREQLLEVGDFLK---KLPKPYvmLFDLHGMDerLRTHREglpaadfsVFYHL 102
Cdd:PRK07735 285 IKEKLGEDVledSYINKLSKDVPTLVVEPEKYYEVAELLRfheQLAFDY--LSELHGTD--FVTHME--------VYVHL 352
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608029296 103 ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDY 173
Cdd:PRK07735 353 YSYGKRQSVAVKVKLDREAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
|
|
| ndhJ |
CHL00012 |
NADH dehydrogenase subunit J |
100-173 |
3.23e-18 |
|
NADH dehydrogenase subunit J
Pssm-ID: 176955 [Multi-domain] Cd Length: 158 Bit Score: 82.05 E-value: 3.23e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1608029296 100 YHLISIDRNRD----IMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDY 173
Cdd:CHL00012 69 YHLTRIQYGVDqpeeVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
|
|
| |
