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Conserved domains on  [gi|1623707774|gb|THR39258|]
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NADH-quinone oxidoreductase subunit B [Klebsiella pneumoniae subsp. pneumoniae]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
18-224 8.01e-104

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 297.66  E-value: 8.01e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  18 PLQKQEIVTDPLEQEVNKSVYMGKLEhalhDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAeVLRASPRQA 97
Cdd:PRK06411    1 PLQKDEIVTMGLEEELNKGVVLTTLD----DLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  98 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 176
Cdd:PRK06411   76 DLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKL 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1623707774 177 QESIGKERRPLSWVvgdqgvyranmqsererkrgERIAVTNLRTPDEI 224
Cdd:PRK06411  156 QKKIRQSERERKRG--------------------ERIAVTNLRTPTIA 183
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
18-224 8.01e-104

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 297.66  E-value: 8.01e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  18 PLQKQEIVTDPLEQEVNKSVYMGKLEhalhDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAeVLRASPRQA 97
Cdd:PRK06411    1 PLQKDEIVTMGLEEELNKGVVLTTLD----DLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  98 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 176
Cdd:PRK06411   76 DLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKL 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1623707774 177 QESIGKERRPLSWVvgdqgvyranmqsererkrgERIAVTNLRTPDEI 224
Cdd:PRK06411  156 QKKIRQSERERKRG--------------------ERIAVTNLRTPTIA 183
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 46-193 1.07e-99

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 285.92  E-value: 1.07e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPK 125
Cdd:COG0377     4 LDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPEPK 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1623707774 126 WVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSWVVGD 193
Cdd:COG0377    84 WVIAMGACAISGGPYwDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYGE 152
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 36-183 1.10e-90

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 263.06  E-value: 1.10e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  36 SVYMGKLEhalhDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQ 115
Cdd:TIGR01957   1 GVLLTTVD----KLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALR 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1623707774 116 RLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183
Cdd:TIGR01957  77 RLYDQMPEPKWVISMGACANSGGMFHTsYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
66-176 6.40e-35

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 120.38  E-value: 6.40e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  66 SCCYVEMVTSFTAVHDVA-----RFGaEVLRASPR----QADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 136
Cdd:pfam01058   2 TGCTISLLALHPPLLDLLdlislRYG-IPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1623707774 137 GG---MYDIYSV-VQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 176
Cdd:pfam01058  81 GGipaAGNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
18-224 8.01e-104

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 297.66  E-value: 8.01e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  18 PLQKQEIVTDPLEQEVNKSVYMGKLEhalhDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAeVLRASPRQA 97
Cdd:PRK06411    1 PLQKDEIVTMGLEEELNKGVVLTTLD----DLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  98 DLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 176
Cdd:PRK06411   76 DLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKL 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1623707774 177 QESIGKERRPLSWVvgdqgvyranmqsererkrgERIAVTNLRTPDEI 224
Cdd:PRK06411  156 QKKIRQSERERKRG--------------------ERIAVTNLRTPTIA 183
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 46-193 1.07e-99

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 285.92  E-value: 1.07e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPK 125
Cdd:COG0377     4 LDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMPEPK 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1623707774 126 WVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSWVVGD 193
Cdd:COG0377    84 WVIAMGACAISGGPYwDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYGE 152
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 36-183 1.10e-90

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 263.06  E-value: 1.10e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  36 SVYMGKLEhalhDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQ 115
Cdd:TIGR01957   1 GVLLTTVD----KLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALR 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1623707774 116 RLYDQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183
Cdd:TIGR01957  77 RLYDQMPEPKWVISMGACANSGGMFHTsYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
45-195 1.25e-89

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 279.74  E-value: 1.25e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  45 ALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP 124
Cdd:PRK13292   11 SLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKMAPSILRLYEQMAEP 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1623707774 125 KWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLSWVVGDQG 195
Cdd:PRK13292   91 KWVISMGSCANSGGMYDVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREERPARPVLHLQG 161
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 50-184 3.69e-70

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 212.46  E-value: 3.69e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  50 VNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVIS 129
Cdd:PRK14815   27 INWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKWVIA 106

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1623707774 130 MGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184
Cdd:PRK14815  107 MGACASSGGMYRSYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTER 161
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
27-184 1.04e-69

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 214.08  E-value: 1.04e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  27 DPLEQEVNKSvymGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC 106
Cdd:PRK14819    5 DPTQLELEKQ---GVLLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGTV 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1623707774 107 FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184
Cdd:PRK14819   82 TKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFrDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQS 160
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
46-185 1.03e-62

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 193.51  E-value: 1.03e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPK 125
Cdd:PRK14820   23 LDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMAEPR 102

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1623707774 126 WVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE--RR 185
Cdd:PRK14820  103 WVVAVGACASSGGIFDTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNEslRR 164
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
36-184 1.56e-61

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 190.51  E-value: 1.56e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  36 SVYMGKLEhalhDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQ 115
Cdd:PRK14816   25 NVFVGVLD----DLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLK 100

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774 116 RLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184
Cdd:PRK14816  101 RLYDQMADPKYVIAVGGCAVSGGPFkKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 170
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
39-195 2.09e-61

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 190.17  E-value: 2.09e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  39 MGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLY 118
Cdd:PRK14817   18 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTVNCKQAPILQRVY 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774 119 DQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGK------ERRPLSWVVG 192
Cdd:PRK14817   98 EQMADPKWVMAFGVCASSGGFYDNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQNqshkliDRKPLPVIAG 177


                  ...
gi 1623707774 193 DQG 195
Cdd:PRK14817  178 GAG 180
ndhK CHL00023
NADH dehydrogenase subunit K
 28-183 2.51e-60

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 188.76  E-value: 2.51e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  28 PLEQEVNKSVYMGklehALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAeVLRASPRQADLMVVAGTCF 107
Cdd:CHL00023    8 LLDRTTSNSVIST----TLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVT 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1623707774 108 TKMAPVIQRLYDQMLEPKWVISMGACANSGGMY--DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 183
Cdd:CHL00023   83 MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 46-180 4.33e-59

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 184.46  E-value: 4.33e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPK 125
Cdd:PRK14814   23 LESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPK 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1623707774 126 WVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 180
Cdd:PRK14814  103 FVISVGACASSGGMFHTYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKL 157
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 46-184 4.00e-58

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 181.30  E-value: 4.00e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  46 LHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAeVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPK 125
Cdd:PRK14818   21 LDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGA-IPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPK 99

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774 126 WVISMGACANSGGMYDI-YSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 184
Cdd:PRK14818  100 YVISMGSCSNCGGLFQLgYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEP 159
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 45-188 3.89e-53

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 169.29  E-value: 3.89e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  45 ALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAeVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP 124
Cdd:PRK14813   17 SVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGI-FPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEP 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1623707774 125 KWVISMGACANSGGMY--DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERRPLS 188
Cdd:PRK14813   96 RYVLSMGSCSNCGGPYweHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQIGIS 161
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
52-185 2.85e-48

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 154.95  E-value: 2.85e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  52 WGRKNSIW--PYNFGlSC--CYVEMVTSFTAVHDVARFGAeVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWV 127
Cdd:COG3260     1 KVLGRSLWirHVDAG-SCngCEIEILALLTPRYDLERFGI-KFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1623707774 128 ISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
Cdd:COG3260    79 VAVGDCACSGGVFrDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
66-176 6.40e-35

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 120.38  E-value: 6.40e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774  66 SCCYVEMVTSFTAVHDVA-----RFGaEVLRASPR----QADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 136
Cdd:pfam01058   2 TGCTISLLALHPPLLDLLdlislRYG-IPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1623707774 137 GG---MYDIYSV-VQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 176
Cdd:pfam01058  81 GGipaAGNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
127-176 3.04e-06

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 46.84  E-value: 3.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623707774 127 VISMGACANSGG------MYDIYSVVQGV--------------------------DKFIPVDVYIPGCPPRPEAYMQALM 174
Cdd:COG1941    81 LVALGACAVTGGipalrnLYDLEELLERVygetpstnpqipgeelpelldrvrplSEVVKVDYELPGCPPDPDQILEVLT 160


                  ..
gi 1623707774 175 LL 176
Cdd:COG1941   161 AL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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