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Conserved domains on  [gi|1625600657|gb|TIC51574|]
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hypothetical protein E3Q04_03749 [Wallemia mellicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribonuc_P_40 super family cl07264
Ribonuclease P 40kDa (Rpp40) subunit; The tRNA processing enzyme ribonuclease P (RNase P) ...
 5-102 5.82e-04

Ribonuclease P 40kDa (Rpp40) subunit; The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex.


The actual alignment was detected with superfamily member pfam08584:

Pssm-ID: 462526  Cd Length: 277  Bit Score: 38.45  E-value: 5.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625600657   5 SPVLSTDGSGDIKA-KYTLNEIDSIVPNEGTSVEDVLEWISLVKLE----------NGYTNNYN-PEFEYTTARVKHHQW 72
Cdd:pfam08584 136 QPSISTTTLRDVLCpSLELESEYSQENELSCSALELLEWLGLVSLGsprvnaddaiDPYLSTYScPEPSEKTGEVTSLTW 215

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1625600657  73 RGLLSSKEVYNYIEEIK---------P-MAIQVVGYTHSP 102
Cdd:pfam08584 216 TGFIPPEWILGLLEKLRryvaepklaPwFALTVHGFADSP 255
 
Name Accession Description Interval E-value
Ribonuc_P_40 pfam08584
Ribonuclease P 40kDa (Rpp40) subunit; The tRNA processing enzyme ribonuclease P (RNase P) ...
 5-102 5.82e-04

Ribonuclease P 40kDa (Rpp40) subunit; The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex.


Pssm-ID: 462526  Cd Length: 277  Bit Score: 38.45  E-value: 5.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625600657   5 SPVLSTDGSGDIKA-KYTLNEIDSIVPNEGTSVEDVLEWISLVKLE----------NGYTNNYN-PEFEYTTARVKHHQW 72
Cdd:pfam08584 136 QPSISTTTLRDVLCpSLELESEYSQENELSCSALELLEWLGLVSLGsprvnaddaiDPYLSTYScPEPSEKTGEVTSLTW 215

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1625600657  73 RGLLSSKEVYNYIEEIK---------P-MAIQVVGYTHSP 102
Cdd:pfam08584 216 TGFIPPEWILGLLEKLRryvaepklaPwFALTVHGFADSP 255
 
Name Accession Description Interval E-value
Ribonuc_P_40 pfam08584
Ribonuclease P 40kDa (Rpp40) subunit; The tRNA processing enzyme ribonuclease P (RNase P) ...
 5-102 5.82e-04

Ribonuclease P 40kDa (Rpp40) subunit; The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex.


Pssm-ID: 462526  Cd Length: 277  Bit Score: 38.45  E-value: 5.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1625600657   5 SPVLSTDGSGDIKA-KYTLNEIDSIVPNEGTSVEDVLEWISLVKLE----------NGYTNNYN-PEFEYTTARVKHHQW 72
Cdd:pfam08584 136 QPSISTTTLRDVLCpSLELESEYSQENELSCSALELLEWLGLVSLGsprvnaddaiDPYLSTYScPEPSEKTGEVTSLTW 215

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1625600657  73 RGLLSSKEVYNYIEEIK---------P-MAIQVVGYTHSP 102
Cdd:pfam08584 216 TGFIPPEWILGLLEKLRryvaepklaPwFALTVHGFADSP 255
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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