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Conserved domains on  [gi|1625600658|gb|TIC51575|]
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hypothetical protein E3Q04_03748 [Wallemia mellicola]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CcO_VIIa_fungal cd22888
fungal cytochrome c oxidase subunit VIIa; The fungal cytochrome c oxidase subunit VIIa, ...
4-56 4.70e-28

fungal cytochrome c oxidase subunit VIIa; The fungal cytochrome c oxidase subunit VIIa, encoded by the gene COX9, is a subunit of the cytochrome c oxidase (CcO, also called complex IV or CIV), the terminal oxidase in the mitochondrial electron transport chain which drives oxidative phosphorylation. CcO is a multi-chain transmembrane protein complex located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 14 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 11 subunits are encoded within the nuclear genome. The VIIa subunit is the fungal homolog to subunit VIc in higher eukaryotes. It is a single-pass membrane protein and its specific function remains unclear.


:

Pssm-ID: 438622  Cd Length: 53  Bit Score: 94.55  E-value: 4.70e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1625600658  4 IAPITGKFRKSVIRDISVSLGLGTALGYAYWWGVHLPANSQRDQFYLKLAKEK 56
Cdd:cd22888    1 IAPITGMLRKRIIRDISIGLGLGTVAAYYFWYGYHLPKVRKRDAYYAKLAAEK 53
 
Name Accession Description Interval E-value
CcO_VIIa_fungal cd22888
fungal cytochrome c oxidase subunit VIIa; The fungal cytochrome c oxidase subunit VIIa, ...
4-56 4.70e-28

fungal cytochrome c oxidase subunit VIIa; The fungal cytochrome c oxidase subunit VIIa, encoded by the gene COX9, is a subunit of the cytochrome c oxidase (CcO, also called complex IV or CIV), the terminal oxidase in the mitochondrial electron transport chain which drives oxidative phosphorylation. CcO is a multi-chain transmembrane protein complex located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 14 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 11 subunits are encoded within the nuclear genome. The VIIa subunit is the fungal homolog to subunit VIc in higher eukaryotes. It is a single-pass membrane protein and its specific function remains unclear.


Pssm-ID: 438622  Cd Length: 53  Bit Score: 94.55  E-value: 4.70e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1625600658  4 IAPITGKFRKSVIRDISVSLGLGTALGYAYWWGVHLPANSQRDQFYLKLAKEK 56
Cdd:cd22888    1 IAPITGMLRKRIIRDISIGLGLGTVAAYYFWYGYHLPKVRKRDAYYAKLAAEK 53
 
Name Accession Description Interval E-value
CcO_VIIa_fungal cd22888
fungal cytochrome c oxidase subunit VIIa; The fungal cytochrome c oxidase subunit VIIa, ...
4-56 4.70e-28

fungal cytochrome c oxidase subunit VIIa; The fungal cytochrome c oxidase subunit VIIa, encoded by the gene COX9, is a subunit of the cytochrome c oxidase (CcO, also called complex IV or CIV), the terminal oxidase in the mitochondrial electron transport chain which drives oxidative phosphorylation. CcO is a multi-chain transmembrane protein complex located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 14 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 11 subunits are encoded within the nuclear genome. The VIIa subunit is the fungal homolog to subunit VIc in higher eukaryotes. It is a single-pass membrane protein and its specific function remains unclear.


Pssm-ID: 438622  Cd Length: 53  Bit Score: 94.55  E-value: 4.70e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1625600658  4 IAPITGKFRKSVIRDISVSLGLGTALGYAYWWGVHLPANSQRDQFYLKLAKEK 56
Cdd:cd22888    1 IAPITGMLRKRIIRDISIGLGLGTVAAYYFWYGYHLPKVRKRDAYYAKLAAEK 53
CcO_VIc-like cd00927
Cytochrome c oxidase subunit VIc-like; Cytochrome c oxidase subunit VIc-like proteins are ...
7-56 4.24e-05

Cytochrome c oxidase subunit VIc-like; Cytochrome c oxidase subunit VIc-like proteins are subunits of the cytochrome c oxidase (CcO, also called complex IV or CIV), the terminal oxidase in the mitochondrial electron transport chain which drives oxidative phosphorylation. CcO is a multi-chain transmembrane protein complex located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 14 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 11 subunits are encoded within the nuclear genome. The VIc subunit-like proteins are single-pass membrane proteins found only in eukaryotes and their specific function remains unclear.


Pssm-ID: 438621  Cd Length: 50  Bit Score: 36.24  E-value: 4.24e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1625600658  7 ITGKFRKSVIRDISVSLGLGTALGYAYWWGVHLPANSQRDQFYLKLAKEK 56
Cdd:cd00927    1 LPGLIKRRLRKDIGYGLMLGLIPGTFFKFGVAEKKQKEREDFYAAYDKRK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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