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Conserved domains on  [gi|1629760080|gb|TJH28528|]
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nitrous oxide-stimulated promoter family protein [Escherichia coli]

Protein Classification

nitrous oxide-stimulated promoter family protein( domain architecture ID 10570245)

nitrous oxide-stimulated promoter family protein similar to Escherichia coli YgbA, which is regulated by the gene-product of the bacterial nsrR gene in response to nitric oxide and nitrosative stress

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 4-108 8.14e-50

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


:

Pssm-ID: 432053  Cd Length: 106  Bit Score: 153.52  E-value: 8.14e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629760080   4 KRISREKLTIKKMIDLYQAKCPQASAEP-EHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGP 82
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGELcAECQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*.
gi 1629760080  83 RMLWRHPILTVRHLIDDKRPVPELPE 108
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLPP 106
 
Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 4-108 8.14e-50

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


Pssm-ID: 432053  Cd Length: 106  Bit Score: 153.52  E-value: 8.14e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629760080   4 KRISREKLTIKKMIDLYQAKCPQASAEP-EHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGP 82
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGELcAECQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*.
gi 1629760080  83 RMLWRHPILTVRHLIDDKRPVPELPE 108
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLPP 106
PRK10410 PRK10410
nitrous oxide-stimulated promoter family protein;
1-98 3.17e-44

nitrous oxide-stimulated promoter family protein;


Pssm-ID: 236683  Cd Length: 100  Bit Score: 139.31  E-value: 3.17e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629760080   1 MSGKRISREKLTIKKMIDLYQAKCPQASAEP--EHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMR 78
Cdd:PRK10410    1 MLGKKILREKKTIKKMIRLYCKAKHGGEPQKlcPECEELLEYAQKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVMR 80

                          90       100
                  ....*....|....*....|
gi 1629760080  79 WAGPRMLWRHPILTVRHLID 98
Cdd:PRK10410   81 FSGPRMLLRHPILAIRHLFD 100
 
Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 4-108 8.14e-50

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


Pssm-ID: 432053  Cd Length: 106  Bit Score: 153.52  E-value: 8.14e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629760080   4 KRISREKLTIKKMIDLYQAKCPQASAEP-EHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGP 82
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGELcAECQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*.
gi 1629760080  83 RMLWRHPILTVRHLIDDKRPVPELPE 108
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLPP 106
PRK10410 PRK10410
nitrous oxide-stimulated promoter family protein;
1-98 3.17e-44

nitrous oxide-stimulated promoter family protein;


Pssm-ID: 236683  Cd Length: 100  Bit Score: 139.31  E-value: 3.17e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629760080   1 MSGKRISREKLTIKKMIDLYQAKCPQASAEP--EHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMR 78
Cdd:PRK10410    1 MLGKKILREKKTIKKMIRLYCKAKHGGEPQKlcPECEELLEYAQKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVMR 80

                          90       100
                  ....*....|....*....|
gi 1629760080  79 WAGPRMLWRHPILTVRHLID 98
Cdd:PRK10410   81 FSGPRMLLRHPILAIRHLFD 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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