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Conserved domains on  [gi|1630707198|gb|TJQ51096|]
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phage tail protein, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4376 super family cl16786
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 1-46 9.93e-03

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


The actual alignment was detected with superfamily member pfam14301:

Pssm-ID: 433852  Cd Length: 102  Bit Score: 31.16  E-value: 9.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1630707198   1 VTAEELIALseaaEQAMFTKGMEIHVRQRTMKKELKKLTSADEILA 46
Cdd:pfam14301  61 LTAEQLIAL----GQAVTQHVQACFDRAREHKAAIEAAETLEAVEA 102
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 1-46 9.93e-03

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 31.16  E-value: 9.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1630707198   1 VTAEELIALseaaEQAMFTKGMEIHVRQRTMKKELKKLTSADEILA 46
Cdd:pfam14301  61 LTAEQLIAL----GQAVTQHVQACFDRAREHKAAIEAAETLEAVEA 102
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 1-46 9.93e-03

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 31.16  E-value: 9.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1630707198   1 VTAEELIALseaaEQAMFTKGMEIHVRQRTMKKELKKLTSADEILA 46
Cdd:pfam14301  61 LTAEQLIAL----GQAVTQHVQACFDRAREHKAAIEAAETLEAVEA 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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