|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
9-334 |
0e+00 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 736.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 9 KELLLDIKDLKVHFSIAAKSAWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQD 88
Cdd:PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 89 LTKMQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSG 168
Cdd:PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 169 GQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 249 ESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIQMLEGDLPSPINPPSGCVFRTRCPQATEACAQTKPTIQGDDVHAVS 328
Cdd:PRK15079 245 TYDEVYHNPLHPYTKALMSAVPIPDPDLERNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVS 324
|
....*.
gi 1633185471 329 CLHVQV 334
Cdd:PRK15079 325 CLKVDP 330
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
7-333 |
0e+00 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 554.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSKELLLDIKDLKVHFSIaaKSAWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLG 86
Cdd:COG4608 2 AMAEPLLEVRDLKKHFPV--RGGLFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLTKMQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFfPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEF 166
Cdd:COG4608 80 QDITGLSGRELRPLRRRMQMVFQDPYASLNPRMTVGDIIAEPLRIH-GLASKAERRERVAELLELVGLRPEHADRYPHEF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVE 246
Cdd:COG4608 159 SGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 247 LGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIqmLEGDLPSPINPPSGCVFRTRCPQATEACAQTKPT-IQGDDVH 325
Cdd:COG4608 239 IAPRDELYARPLHPYTQALLSAVPVPDPERRRERIV--LEGDVPSPLNPPSGCRFHTRCPYAQDRCATEEPPlREVGPGH 316
|
....*...
gi 1633185471 326 AVSCLHVQ 333
Cdd:COG4608 317 QVACHLAE 324
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
12-333 |
3.32e-178 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 495.73 E-value: 3.32e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIAAKSawpwakpsnLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEA---TEGQVMWLGQD 88
Cdd:COG0444 1 LLEVRNLKVYFPTRRGV---------VKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGED 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 89 LTKMQEVKRRETR-KEIQMIFQDPLASLNPRMSVGDIIAEPLETFFPeLSKQEVKDRVKEMMAKVGLLP--NVINRYPHE 165
Cdd:COG0444 72 LLKLSEKELRKIRgREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGG-LSKAEARERAIELLERVGLPDpeRRLDRYPHE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 166 FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAV 245
Cdd:COG0444 151 LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIV 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 246 ELGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIqmlEGDLPSPINPPSGCVFRTRCPQATEACAQTKPT-IQGDDV 324
Cdd:COG0444 231 EEGPVEELFENPRHPYTRALLSSIPRLDPDGRRLIPI---PGEPPSLLNPPSGCRFHPRCPYAMDRCREEEPPlREVGPG 307
|
....*....
gi 1633185471 325 HAVSCLHVQ 333
Cdd:COG0444 308 HRVACHLYE 316
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
12-332 |
4.80e-151 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 427.46 E-value: 4.80e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIaakSAWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:PRK11308 5 LLQAIDLKKHYPV---KRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLE--TffpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGG 169
Cdd:PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLinT---SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 250 SDALFSDPKHPYTKALMSAVPI--PDPRLERNKtiqmLEGDLPSPINPPSGCVFRTRCPQATEACAQTKPTIQGDDVHAV 327
Cdd:PRK11308 239 KEQIFNNPRHPYTQALLSATPRlnPDDRRERIK----LTGELPSPLNPPPGCAFNARCPRAFGRCRQEQPQLRDYDGRLV 314
|
....*
gi 1633185471 328 SCLHV 332
Cdd:PRK11308 315 ACFAV 319
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
10-273 |
2.09e-145 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 420.63 E-value: 2.09e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 10 ELLLDIKDLKVHFSIaaKSAWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEaTEGQVMWLGQDL 89
Cdd:COG4172 273 PPLLEARDLKVWFPI--KRGLFRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 90 TKMQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGG 169
Cdd:COG4172 350 DGLSRRALRPLRRRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGPGLSAAERRARVAEALEEVGLDPAARHRYPHEFSGG 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:COG4172 430 QRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGP 509
|
250 260
....*....|....*....|....
gi 1633185471 250 SDALFSDPKHPYTKALMSAVPIPD 273
Cdd:COG4172 510 TEQVFDAPQHPYTRALLAAAPLLE 533
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-275 |
6.83e-144 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 416.23 E-value: 6.83e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 8 SKELLLDIKDLKVHFSIAAKSAwpwakpsnLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQ 87
Cdd:COG1123 256 AAEPLLEVRNLSKRYPVRGKGG--------VRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGK 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 DLTKMQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLEtFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFS 167
Cdd:COG1123 328 DLTKLSRRSLRELRRRVQMVFQDPYSSLNPRMTVGDIIAEPLR-LHGLLSRAERRERVAELLERVGLPPDLADRYPHELS 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 168 GGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVEL 247
Cdd:COG1123 407 GGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVED 486
|
250 260
....*....|....*....|....*...
gi 1633185471 248 GESDALFSDPKHPYTKALMSAVPIPDPR 275
Cdd:COG1123 487 GPTEEVFANPQHPYTRALLAAVPSLDPA 514
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
12-248 |
1.25e-121 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 348.73 E-value: 1.25e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIaaksawpwaKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:cd03257 1 LLEVKNLSVSFPT---------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQC 171
Cdd:cd03257 72 LSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
12-275 |
1.91e-113 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 329.07 E-value: 1.91e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFsiaaksawpWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:COG1124 1 MLEVRNLSVSY---------GQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQevkRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLEtffpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQC 171
Cdd:COG1124 72 RR---RKAFRRRVQMVFQDPYASLHPRHTVDRILAEPLR----IHGLPDREERIAELLEQVGLPPSFLDRYPHQLSGGQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:COG1124 145 QRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVA 224
|
250 260
....*....|....*....|....
gi 1633185471 252 ALFSDPKHPYTKALMSAVPIPDPR 275
Cdd:COG1124 225 DLLAGPKHPYTRELLAASLAFERA 248
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
7-275 |
2.05e-99 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 303.14 E-value: 2.05e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSKELLLDIKDLKVHFSIAAKSAwpwakpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEA----TEGQV 82
Cdd:COG4172 1 MMSMPLLSVEDLSVAFGQGGGTV---------EAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDpaahPSGSI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 83 MWLGQDLTKMQEVKRRETR-KEIQMIFQDPLASLNPRMSVGDIIAEPLETFFPeLSKQEVKDRVKEMMAKVGLlPNV--- 158
Cdd:COG4172 72 LFDGQDLLGLSERELRRIRgNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRG-LSGAAARARALELLERVGI-PDPerr 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 159 INRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:COG4172 150 LDAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAV 229
|
250 260 270
....*....|....*....|....*....|....*..
gi 1633185471 239 MYLGNAVELGESDALFSDPKHPYTKALMSAVPIPDPR 275
Cdd:COG4172 230 MRQGEIVEQGPTAELFAAPQHPYTRKLLAAEPRGDPR 266
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
40-295 |
8.62e-89 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 278.28 E-value: 8.62e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDPLASLNPRM 119
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLETFfPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:PRK10261 419 TVGDSIMEPLRVH-GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVPIPDPRLERN 279
Cdd:PRK10261 498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVPVADPSRQRP 577
|
250
....*....|....*.
gi 1633185471 280 KTIqMLEGDLPSPINP 295
Cdd:PRK10261 578 QRV-LLSDDLPSNIHL 592
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
8-317 |
8.73e-89 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 269.29 E-value: 8.73e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 8 SKELLLDIKDLKVHFSiaaksawpwAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEA---TEGQVMW 84
Cdd:PRK09473 8 QADALLDVKDLRVTFS---------TPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 85 LGQDLTKMQEVKRRETR-KEIQMIFQDPLASLNPRMSVGDIIAEPLeTFFPELSKQEVKDRVKEMMAKVGLlPNV---IN 160
Cdd:PRK09473 79 NGREILNLPEKELNKLRaEQISMIFQDPMTSLNPYMRVGEQLMEVL-MLHKGMSKAEAFEESVRMLDAVKM-PEArkrMK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 161 RYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMY 240
Cdd:PRK09473 157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 241 LGNAVELGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIQmleGDLPSPINPPSGCVFRTRCPQATEACAQTKP 317
Cdd:PRK09473 237 AGRTMEYGNARDVFYQPSHPYSIGLLNAVPRLDAEGESLLTIP---GNPPNLLRLPKGCPFQPRCPHAMEICSSAPP 310
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
12-268 |
2.47e-88 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 265.55 E-value: 2.47e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIaaKSAWPWAKpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:COG4167 4 LLEVRNLSKTFKY--RTGLFRRQ--QFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRetrKEIQMIFQDPLASLNPRMSVGDIIAEPLEtFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQC 171
Cdd:COG4167 80 GDYKYRC---KHIRMIFQDPNTSLNPRLNIGQILEEPLR-LNTDLTAEEREERIFATLRLVGLLPEHANFYPHMLSSGQK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:COG4167 156 QRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTA 235
|
250
....*....|....*..
gi 1633185471 252 ALFSDPKHPYTKALMSA 268
Cdd:COG4167 236 EVFANPQHEVTKRLIES 252
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
12-275 |
1.86e-81 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 248.18 E-value: 1.86e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFsiaAKSAWPWAKpSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:TIGR02769 2 LLEVRDVTHTY---RTGGLFGAK-QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFfPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQC 171
Cdd:TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
|
250 260
....*....|....*....|....
gi 1633185471 252 ALFSDpKHPYTKALMSAVPIPDPR 275
Cdd:TIGR02769 237 QLLSF-KHPAGRNLQSAVLPEHPV 259
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
12-329 |
2.51e-80 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 247.35 E-value: 2.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSiaaksawpwAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEaTEGQVM-----WLG 86
Cdd:PRK11022 3 LLNVDKLSVHFG---------DESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID-YPGRVMaekleFNG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLTKMQEVKRRE-TRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFfPELSKQEVKDRVKEMMAKVGLlPNVINR---Y 162
Cdd:PRK11022 73 QDLQRISEKERRNlVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH-QGGNKKTRRQRAIDLLNQVGI-PDPASRldvY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 163 PHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 243 NAVELGESDALFSDPKHPYTKALMSAVPipdPRLERNKTIQMLEGDLPSPINPPSGCVFRTRCPQATEACAQTKPTIQGD 322
Cdd:PRK11022 231 QVVETGKAHDIFRAPRHPYTQALLRALP---EFAQDKARLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNML 307
|
....*..
gi 1633185471 323 DVHAVSC 329
Cdd:PRK11022 308 AGRQSKC 314
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
12-278 |
3.37e-80 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 252.90 E-value: 3.37e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIAAKsawpwakpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEAT---EGQVMWLGQD 88
Cdd:COG1123 4 LLEVRDLSVRYPGGDV-----------PAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 89 LTKMQEVKRRetrKEIQMIFQDPLASLNPrMSVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSG 168
Cdd:COG1123 73 LLELSEALRG---RRIGMVFQDPMTQLNP-VTVGDQIAEALENL--GLSRAEARARVLELLEAVGL-ERRLDRYPHQLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 169 GQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:COG1123 146 GQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDG 225
|
250 260 270
....*....|....*....|....*....|
gi 1633185471 249 ESDALFSDPkhpytkALMSAVPIPDPRLER 278
Cdd:COG1123 226 PPEEILAAP------QALAAVPRLGAARGR 249
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
12-329 |
1.67e-76 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 237.88 E-value: 1.67e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLkvhfSIAAKSAWPWakpsnLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE----ATEGQVMWLGQ 87
Cdd:COG4170 3 LLDIRNL----TIEIDTPQGR-----VKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKdnwhVTADRFRWNGI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 DLTKMQEVKRRE-TRKEIQMIFQDPLASLNPRMSVGDIIAE--PLETF---FPELsKQEVKDRVKEMMAKVGLLPN--VI 159
Cdd:COG4170 74 DLLKLSPRERRKiIGREIAMIFQEPSSCLDPSAKIGDQLIEaiPSWTFkgkWWQR-FKWRKKRAIELLHRVGIKDHkdIM 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 160 NRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG4170 153 NSYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 240 YLGNAVELGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIQMLEGDLPSPINPPSGCVFRTRCPQATEACAQTkPTI 319
Cdd:COG4170 233 YCGQTVESGPTEQILKSPHHPYTKALLRSMPDFRQPLPHKSRLNTLPGSIPPLQHLPIGCRLGPRCPYAQKKCVET-PRL 311
|
330
....*....|
gi 1633185471 320 QGDDVHAVSC 329
Cdd:COG4170 312 RKIKGHEFAC 321
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
21-281 |
4.21e-76 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 234.58 E-value: 4.21e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 21 HFSIAAKSAWpwakpsnLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRET 100
Cdd:PRK10419 15 HGGLSGKHQH-------QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 101 RKEIQMIFQDPLASLNPRMSVGDIIAEPLETFFpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARAL 180
Cdd:PRK10419 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLL-SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARAL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 181 ILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVE---LGESDALfsdp 257
Cdd:PRK10419 167 AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVEtqpVGDKLTF---- 242
|
250 260
....*....|....*....|....*.
gi 1633185471 258 KHPYTKALMSAV--PIPDPRLERNKT 281
Cdd:PRK10419 243 SSPAGRVLQNAVlpAFPVRRRTTEKV 268
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
12-267 |
9.02e-75 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 239.22 E-value: 9.02e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIaaKSAWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVeATEGQVMWLGQDLTK 91
Cdd:PRK15134 275 LLDVEQLQVAFPI--RKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQC 171
Cdd:PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511
|
250
....*....|....*.
gi 1633185471 252 ALFSDPKHPYTKALMS 267
Cdd:PRK15134 512 RVFAAPQQEYTRQLLA 527
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
15-288 |
1.28e-70 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 223.03 E-value: 1.28e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 15 IKDLKVHFsiaaksawpWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQE 94
Cdd:COG1135 4 LENLSKTF---------PTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 95 VKRRETRKEIQMIFQDplASLNPRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRI 174
Cdd:COG1135 75 RELRAARRKIGMIFQH--FNLLSSRTVAENVALPLE--IAGVPKAEIRKRVAELLELVG-LSDKADAYPSQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 175 GIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALF 254
Cdd:COG1135 150 GIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVF 229
|
250 260 270
....*....|....*....|....*....|....
gi 1633185471 255 SDPKHPYTKALMSAVPIPDPRLERNKTIQMLEGD 288
Cdd:COG1135 230 ANPQSELTRRFLPTVLNDELPEELLARLREAAGG 263
|
|
| PhnK |
COG4107 |
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ... |
7-269 |
1.57e-65 |
|
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];
Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 207.36 E-value: 1.57e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSKEL--LLDIKDLKVHFSIAAKSAWpwakpsnlkAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQV-- 82
Cdd:COG4107 1 MTNEEqpLLSVRGLSKRYGPGCGTVV---------ACRDVSFDLYPGEVLGIVGESGSGKSTLLKCLYFDLAPTSGSVyy 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 83 -MWLG--QDLTKMQEVKRRE-TRKEIQMIFQDPLASLNPRMSVGDIIAEPL----ETFFpelskQEVKDRVKEMMAKVGL 154
Cdd:COG4107 72 rDRDGgpRDLFALSEAERRRlRRTDWGMVYQNPRDGLRMDVSAGGNIAERLmaagERHY-----GDIRARALEWLERVEI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 155 LPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISD 234
Cdd:COG4107 147 PLERIDDLPRTFSGGMQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLAD 226
|
250 260 270
....*....|....*....|....*....|....*
gi 1633185471 235 RVLVMYLGNAVELGESDALFSDPKHPYTKALMSAV 269
Cdd:COG4107 227 RTMVMKNGRVVESGLTDQVLEDPQHPYTQLLVSSV 261
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
34-258 |
2.44e-65 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 205.89 E-value: 2.44e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQ--DP 111
Cdd:cd03258 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQhfNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLNprmsVGDIIAEPLETFFpeLSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:cd03258 94 LSSRT----VFENVALPLEIAG--VPKAEIEERVLELLELVGL-EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:cd03258 167 ATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
10-268 |
3.16e-65 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 206.95 E-value: 3.16e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 10 ELLLDIKDLKVHFSIAAKsawpWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDL 89
Cdd:PRK15112 2 ETLLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 90 TkMQEVKRRETRkeIQMIFQDPLASLNPRMSVGDIIAEPLEtFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGG 169
Cdd:PRK15112 78 H-FGDYSYRSQR--IRMIFQDPSTSLNPRQRISQILDFPLR-LNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
|
250
....*....|....*....
gi 1633185471 250 SDALFSDPKHPYTKALMSA 268
Cdd:PRK15112 234 TADVLASPLHELTKRLIAG 252
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
42-264 |
5.37e-65 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 205.21 E-value: 5.37e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDP--LASlnprM 119
Cdd:COG1127 22 DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELRRRIGMLFQGGalFDS----L 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLEtFFPELSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:COG1127 98 TVFENVAFPLR-EHTDLSEAEIRELVLEKLELVG-LPGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPI 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFsDPKHPYTKA 264
Cdd:COG1127 176 TSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL-ASDDPWVRQ 239
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
42-263 |
1.71e-63 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 201.19 E-value: 1.71e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDplASLNPRMSV 121
Cdd:cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS--GALFDSLTV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAEPLETFFpELSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:cd03261 95 FENVAFPLREHT-RLSEEEIREIVLEKLEAVG-LRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 202 AQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPkHPYTK 263
Cdd:cd03261 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD-DPLVR 233
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
40-278 |
2.24e-63 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 204.26 E-value: 2.24e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQ--DPLASLNp 117
Cdd:PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQhfNLLSSRT- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 rmsVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:PRK11153 99 ---VFDNVALPLE--LAGTPKAEIKARVTELLELVGL-SDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 198 VSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAV---PIPDP 274
Cdd:PRK11153 173 PATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFIQSTlhlDLPED 252
|
....
gi 1633185471 275 RLER 278
Cdd:PRK11153 253 YLAR 256
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
12-274 |
4.67e-62 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 206.09 E-value: 4.67e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIAAKSAwpwakpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL-----VEATEGQVMWLG 86
Cdd:PRK15134 5 LLAIENLSVAFRQQQTVR---------TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLlpsppVVYPSGDIRFHG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLTKMQEVKRRETR-KEIQMIFQDPLASLNPRMSVGDIIAEPLeTFFPELSKQEVKDRVKEMMAKVGL--LPNVINRYP 163
Cdd:PRK15134 76 ESLLHASEQTLRGVRgNKIAMIFQEPMVSLNPLHTLEKQLYEVL-SLHRGMRREAARGEILNCLDRVGIrqAAKRLTDYP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 164 HEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGN 243
Cdd:PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234
|
250 260 270
....*....|....*....|....*....|.
gi 1633185471 244 AVELGESDALFSDPKHPYTKALMSAVPIPDP 274
Cdd:PRK15134 235 CVEQNRAATLFSAPTHPYTQKLLNSEPSGDP 265
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
40-270 |
2.01e-61 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 206.63 E-value: 2.01e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQV----MWLGQ------DLTKMQEVKRRETR-KEIQMIF 108
Cdd:PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVqcdkMLLRRrsrqviELSEQSAAQMRHVRgADMAMIF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 109 QDPLASLNPRMSVGDIIAEPLEtFFPELSKQEVKDRVKEMMAKVGL--LPNVINRYPHEFSGGQCQRIGIARALILKPKM 186
Cdd:PRK10261 111 QEPMTSLNPVFTVGEQIAESIR-LHQGASREEAMVEAKRMLDQVRIpeAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 187 IICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALM 266
Cdd:PRK10261 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALL 269
|
....
gi 1633185471 267 SAVP 270
Cdd:PRK10261 270 AAVP 273
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
12-261 |
2.82e-57 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 188.77 E-value: 2.82e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:COG3842 5 ALELENVSKRYG-------------DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRetrkeIQMIFQDPlaSLNPRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQC 171
Cdd:COG3842 72 LPPEKRN-----VGMVFQDY--ALFPHLTVAENVAFGLR--MRGVPKAEIRARVAELLELVGL-EGLADRYPHQLSGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHD----LSvvkhISDRVLVMYLGNAVEL 247
Cdd:COG3842 142 QRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLA----LADRIAVMNDGRIEQV 217
|
250
....*....|....
gi 1633185471 248 GESDALFSDPKHPY 261
Cdd:COG3842 218 GTPEEIYERPATRF 231
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
12-329 |
3.11e-57 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 188.09 E-value: 3.11e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIAAKSawpwakpsnLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE----ATEGQVMWLGQ 87
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGW---------VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKdnwrVTADRMRFDDI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 DLTKMQEVKRRE-TRKEIQMIFQDPLASLNPRMSVGD--IIAEPLETFFPELsKQEV---KDRVKEMMAKVGLL--PNVI 159
Cdd:PRK15093 74 DLLRLSPRERRKlVGHNVSMIFQEPQSCLDPSERVGRqlMQNIPGWTYKGRW-WQRFgwrKRRAIELLHRVGIKdhKDAM 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 160 NRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 240 YLGNAVELGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIQMLEGDLPSPINPPSGCVFRTRCPQATEACAQTkPTI 319
Cdd:PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEHLPIGCRLGPRCPYAQRECIET-PRL 311
|
330
....*....|
gi 1633185471 320 QGDDVHAVSC 329
Cdd:PRK15093 312 TGAKNHLYAC 321
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
40-248 |
9.46e-56 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 180.41 E-value: 9.46e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeIQMIFQDPlaSLNPRM 119
Cdd:cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN-----IGMVFQDY--ALFPHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:cd03259 88 TVAENIAFGLK--LRGVPKAEIRARVRELLELVGL-EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03259 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
38-239 |
1.22e-54 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 178.31 E-value: 1.22e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETR-KEIQMIFQDPlaSLN 116
Cdd:COG1136 21 VTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARLRrRHIGFVFQFF--NLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:COG1136 99 PELTALENVALPLL--LAGVSRKERRERARELLERVGL-GDRLDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1633185471 197 DVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:COG1136 176 DSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRL 217
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
37-239 |
1.65e-54 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 177.68 E-value: 1.65e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETR-KEIQMIFQDPlaSL 115
Cdd:cd03255 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRrRHIGFVFQSF--NL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIIAEPLetFFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:cd03255 94 LPDLTALENVELPL--LLAGVPKKERRERAEELLERVGL-GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGN 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:cd03255 171 LDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIEL 213
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
35-258 |
2.08e-54 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 177.52 E-value: 2.08e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDPLAS 114
Cdd:COG1122 11 PGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKN---LRELRRKVGLVFQNPDDQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 L-NPrmSVGDIIAepletFFPE---LSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:COG1122 88 LfAP--TVEEDVA-----FGPEnlgLPREEIRERVEEALELVGLE-HLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:COG1122 160 EPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYE 226
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
12-269 |
3.60e-53 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 174.80 E-value: 3.60e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTk 91
Cdd:COG1126 1 MIEIENLHKSFG-------------DLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLT- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRETRKEIQMIFQdplaSLN--PRMSVGDIIAEPLETFFpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGG 169
Cdd:COG1126 67 DSKKDINKLRRKVGMVFQ----QFNlfPHLTVLENVTLAPIKVK-KMSKAEAEERAMELLERVGLA-DKADAYPAQLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:COG1126 141 QQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGP 219
|
250 260
....*....|....*....|
gi 1633185471 250 SDALFSDPKHPYTKALMSAV 269
Cdd:COG1126 220 PEEFFENPQHERTRAFLSKV 239
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
39-239 |
1.17e-52 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 171.22 E-value: 1.17e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqEVKRRETRKEIQMIFQDPlaSLNPR 118
Cdd:cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL-EDELPPLRRRIGMVFQDF--ALFPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLetffpelskqevkdrvkemmakvgllpnvinryphefSGGQCQRIGIARALILKPKMIICDEPVSALDV 198
Cdd:cd03229 91 LTVLENIALGL-------------------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDP 133
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1633185471 199 SIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL 174
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
37-269 |
1.45e-52 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 173.96 E-value: 1.45e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQ-----DLTKMQEVKRRE-TRKEIQMIFQD 110
Cdd:PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrDLYALSEAERRRlLRTEWGFVHQH 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 PLASLNPRMSVGDIIAEPLETFfPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:PRK11701 98 PRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMD 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAV 269
Cdd:PRK11701 177 EPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
13-239 |
1.83e-52 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 172.27 E-value: 1.83e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkm 92
Cdd:cd03293 1 LEVRNVSKTYG---------GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 93 qevkrrETRKEIQMIFQDPlaSLNPRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQ 172
Cdd:cd03293 70 ------GPGPDRGYVFQQD--ALLPWLTVLDNVALGLE--LQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQ 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 173 RIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03293 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
40-258 |
4.17e-52 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 171.65 E-value: 4.17e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeIQMIFQDplASLNPRM 119
Cdd:cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP-----VNTVFQN--YALFPHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:cd03300 88 TVFENIAFGLRL--KKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:cd03300 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
39-239 |
2.27e-51 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 169.18 E-value: 2.27e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPLASL-NP 117
Cdd:cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL---SLKELRRKVGLVFQNPDDQFfGP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RmsVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:cd03225 92 T--VEEEVAFGLENL--GLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1633185471 198 VSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03225 167 PAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVL 207
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
35-239 |
2.50e-51 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 170.24 E-value: 2.50e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDPlaS 114
Cdd:COG3638 13 PGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLRRRIGMIFQQF--N 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSV---------GDIiaEPLETFFPELSKQEvKDRVKEMMAKVGLLPNVINRyPHEFSGGQCQRIGIARALILKPK 185
Cdd:COG3638 91 LVPRLSVltnvlagrlGRT--STWRSLLGLFPPED-RERALEALERVGLADKAYQR-ADQLSGGQQQRVAIARALVQEPK 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 186 MIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG3638 167 LILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGL 220
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
7-239 |
5.92e-50 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 167.19 E-value: 5.92e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MS-KELLLDIKDLKVHFSIAAKSawpwakpsnLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWL 85
Cdd:COG1116 1 MSaAAPALELRGVSKRFPTGGGG---------VTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 86 GQDLTkmqevkrrETRKEIQMIFQDPlaSLNPRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLLPnVINRYPHE 165
Cdd:COG1116 72 GKPVT--------GPGPDRGVVFQEP--ALLPWLTVLDNVALGLE--LRGVPKAERRERARELLELVGLAG-FEDAYPHQ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 166 FSGGQCQRIGIARALILKPKMIICDEPVSALDV----SIQaqvvNLLKELQKELGLSLVFIAHDLS--VVkhISDRVLVM 239
Cdd:COG1116 139 LSGGMRQRVAIARALANDPEVLLMDEPFGALDAltreRLQ----DELLRLWQETGKTVLFVTHDVDeaVF--LADRVVVL 212
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
37-269 |
2.87e-49 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 165.39 E-value: 2.87e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQD-----LTKMQEVKRRE-TRKEIQMIFQD 110
Cdd:TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSgaeleLYQLSEAERRRlMRTEWGFVHQN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 PLASLNPRMSVGDIIAEPLETFfPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:TIGR02323 95 PRDGLRMRVSAGANIGERLMAI-GARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAV 269
Cdd:TIGR02323 174 EPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSSI 252
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
40-270 |
1.40e-48 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 163.97 E-value: 1.40e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETR-KEIQMIFQDplASLNPR 118
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRrKKISMVFQS--FALLPH 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDV 198
Cdd:cd03294 117 RTVLENVAFGLE--VQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 199 SIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVP 270
Cdd:cd03294 194 LIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGVD 265
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
41-192 |
2.77e-48 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 159.35 E-value: 2.77e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDPlaSLNPRMS 120
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE---RKSLRKEIGYVFQDP--QLFPRLT 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 121 VGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGL---LPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:pfam00005 76 VRENLRLGLL--LKGLSKREKDARAEEALEKLGLgdlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
35-249 |
2.92e-48 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 161.37 E-value: 2.92e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRET---RKEIQMIFQDp 111
Cdd:COG2884 12 PGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRL---KRREIpylRRRIGVVFQD- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 lASLNPRMSVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:COG2884 88 -FRLLPDRTVYENVALPLRVT--GKSRKEIRRRVREVLDLVGLS-DKAKALPHELSGGEQQRVAIARALVNRPELLLADE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKeLGLSlVFIA-HDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:COG2884 164 PTGNLDPETSWEIMELLEEINR-RGTT-VLIAtHDLELVDRMPKRVLELEDGRLVRDEA 220
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
39-261 |
4.35e-48 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 161.70 E-value: 4.35e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVK-RRETRKEIQMIfqdplaSLNP 117
Cdd:cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVElRRKIGYVIQQI------GLFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIAepletFFPEL---SKQEVKDRVKEMMAKVGLLP-NVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:cd03295 89 HMTVEENIA-----LVPKLlkwPKEKIRERADELLALVGLDPaEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 194 SALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPY 261
Cdd:cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
35-253 |
7.27e-48 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 161.20 E-value: 7.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDPlaS 114
Cdd:cd03256 11 PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF--N 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSVGDII-------AEPLETFFPELSKQEvKDRVKEMMAKVGLLPNVINRyPHEFSGGQCQRIGIARALILKPKMI 187
Cdd:cd03256 89 LIERLSVLENVlsgrlgrRSTWRSLFGLFPKEE-KQRALAALERVGLLDKAYQR-ADQLSGGQQQRVAIARALMQQPKLI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 188 ICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
7-262 |
8.46e-48 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 164.16 E-value: 8.46e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSkellLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLG 86
Cdd:COG1118 1 MS----IEVRNISKRFG-------------SFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLTKMQEVKRREtrkeIQMIFQDPLasLNPRMSVGDIIAepletFFPE---LSKQEVKDRVKEMMAKVGLlPNVINRYP 163
Cdd:COG1118 64 RDLFTNLPPRERR----VGFVFQHYA--LFPHMTVAENIA-----FGLRvrpPSKAEIRARVEELLELVQL-EGLADRYP 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 164 HEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGN 243
Cdd:COG1118 132 SQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGR 211
|
250
....*....|....*....
gi 1633185471 244 AVELGESDALFSDPKHPYT 262
Cdd:COG1118 212 IEQVGTPDEVYDRPATPFV 230
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
12-253 |
1.02e-46 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 158.23 E-value: 1.02e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFsiaaksawpwakPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:TIGR02315 1 MLEVENLSKVY------------PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRRETRKEIQMIFQDplASLNPRMSV------GDIIAEP-LETFFPELSKQEvKDRVKEMMAKVGLLPNVINRyPH 164
Cdd:TIGR02315 69 LRGKKLRKLRRRIGMIFQH--YNLIERLTVlenvlhGRLGYKPtWRSLLGRFSEED-KERALSALERVGLADKAYQR-AD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 165 EFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNA 244
Cdd:TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
....*....
gi 1633185471 245 VELGESDAL 253
Cdd:TIGR02315 225 VFDGAPSEL 233
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
35-258 |
6.92e-46 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 157.23 E-value: 6.92e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDPLAS 114
Cdd:TIGR04521 15 PFEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDLRKKVGLVFQFPEHQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNpRMSVGDIIAepletFFPE---LSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:TIGR04521 95 LF-EETVYKDIA-----FGPKnlgLSEEEAEERVKEALELVGLDEEYLERSPFELSGGQMRRVAIAGVLAMEPEVLILDE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:TIGR04521 169 PTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVD 235
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
13-239 |
7.31e-46 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 154.99 E-value: 7.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKm 92
Cdd:cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 93 QEVKRRETRKEIQMIFQDplASLNPRMSVGDIIAEPLETFFpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQ 172
Cdd:cd03262 67 DKKNINELRQKVGMVFQQ--FNLFPHLTVLENITLAPIKVK-GMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQ 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 173 RIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03262 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFM 208
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
37-261 |
1.69e-45 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 154.80 E-value: 1.69e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqEVKRREtrkeIQMIFQDplASLN 116
Cdd:cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV-PVQERN----VGFVFQH--YALF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAEPLET--FFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:cd03296 87 RHMTVFDNVAFGLRVkpRSERPPEAEIRAKVHELLKLVQL-DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 195 ALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPY 261
Cdd:cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
37-253 |
3.64e-45 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 154.07 E-value: 3.64e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFQDPlaSLN 116
Cdd:COG1131 12 DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR----DPAEVRRRIGYVPQEP--ALY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAepletFFPEL---SKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:COG1131 86 PDLTVRENLR-----FFARLyglPRKEARERIDELLELFGL-TDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 194 SALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:COG1131 160 SGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
37-253 |
1.12e-44 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 152.33 E-value: 1.12e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEA-----TEGQVMWLGQDLTKMQeVKRRETRKEIQMIFQDP 111
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDLD-VDVLELRRRVGMVFQKP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 laslNP-RMSVGDIIAEPLeTFFPELSKQEVKDRVKEMMAKVGLLPNVINR-YPHEFSGGQCQRIGIARALILKPKMIIC 189
Cdd:cd03260 91 ----NPfPGSIYDNVAYGL-RLHGIKLKEELDERVEEALRKAALWDEVKDRlHALGLSGGQQQRLCLARALANEPEVLLL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 190 DEPVSALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:cd03260 166 DEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
41-269 |
3.31e-44 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 152.12 E-value: 3.31e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPLASLNprMS 120
Cdd:COG1120 17 LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASL---SRRELARRIAYVPQEPPAPFG--LT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIA---EPLETFFPELSKQEvKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:COG1120 92 VRELVAlgrYPHLGLFGRPSAED-REAVEEALERTGLE-HLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLD 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 198 VSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFsdpkhpyTKALMSAV 269
Cdd:COG1120 170 LAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL-------TPELLEEV 234
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
37-259 |
4.59e-44 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 154.46 E-value: 4.59e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeIQMIFQDPlaSLN 116
Cdd:COG3839 15 GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRN-----IAMVFQSY--ALY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:COG3839 88 PHMTVYENIAFPLK--LRKVPKAEIDRRVREAAELLGLED-LLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 197 DVSIQAQVVNLLKELQKELGLSLVFIAHD----LSvvkhISDRVLVMYLGNAVELGESDALFSDPKH 259
Cdd:COG3839 165 DAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaMT----LADRIAVMNDGRIQQVGTPEELYDRPAN 227
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
37-248 |
1.24e-43 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 149.33 E-value: 1.24e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLN 116
Cdd:cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR-----DIAMVFQN--YALY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMmAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:cd03301 85 PHMTVYDNIAFGLK--LRKVPKDEIDERVREV-AELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 197 DVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03301 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
41-279 |
3.10e-43 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 152.18 E-value: 3.10e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevkRRETRKEIQMIFQDplASLNPRMS 120
Cdd:PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH-----RSIQQRDICMVFQS--YALFPHMS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:PRK11432 95 LGENVGYGLKML--GVPKEERKQRVKEALELVDL-AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVPIPDPRLERN 279
Cdd:PRK11432 172 RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPATLSGD 250
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
40-262 |
6.04e-43 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 152.02 E-value: 6.04e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRM 119
Cdd:PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR-----HVNTVFQS--YALFPHM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:PRK09452 102 TVFENVAFGLR--MQKTPAAEITPRVMEALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYT 262
Cdd:PRK09452 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFV 241
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
56-271 |
6.19e-43 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 150.72 E-value: 6.19e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 56 VVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRMSVGDIIAEPLEtfFPE 135
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR-----HINMVFQS--YALFPHMTVEENVAFGLK--MRK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 136 LSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKEL 215
Cdd:TIGR01187 72 VPRAEIKPRVLEALRLVQL-EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 216 GLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVPI 271
Cdd:TIGR01187 151 GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINV 206
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
41-258 |
2.08e-42 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 146.71 E-value: 2.08e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeIQMIFQDplASLNPRMS 120
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD-----ISYVPQN--YALFPHMT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:cd03299 88 VYKNIAYGLKK--RKVDKKEIERKVLEIAEMLGI-DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:cd03299 165 KEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK 222
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
39-261 |
2.18e-42 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 148.70 E-value: 2.18e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVK-RRETRKEIQMIfqdplaSLNP 117
Cdd:COG1125 16 VAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPVElRRRIGYVIQQI------GLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIAepletFFPEL---SKQEVKDRVKEMMAKVGLLPNV-INRYPHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:COG1125 90 HMTVAENIA-----TVPRLlgwDKERIRARVDELLELVGLDPEEyRDRYPHELSGGQQQRVGVARALAADPPILLMDEPF 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 194 SALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPY 261
Cdd:COG1125 165 GALDPITREQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPEEILANPANDF 232
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
40-269 |
8.58e-42 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 145.33 E-value: 8.58e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRM 119
Cdd:TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDR-----KIGFVFQH--YALFKHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLETFFPelSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:TIGR00968 88 TVRDNIAFGLEIRKH--PKAKIKARVEELLELVQL-EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAV 269
Cdd:TIGR00968 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEV 234
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
7-239 |
9.05e-41 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 142.92 E-value: 9.05e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSKELLLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLG 86
Cdd:COG1121 1 MMMMPAIELENLTVSYG-------------GRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLtkmqevkrRETRKEI----QMifqdplASLNPR--MSVGDIIA---EPLETFFPELSKQEvKDRVKEMMAKVGLLpN 157
Cdd:COG1121 68 KPP--------RRARRRIgyvpQR------AEVDWDfpITVRDVVLmgrYGRRGLFRRPSRAD-REAVDEALERVGLE-D 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 158 VINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVL 237
Cdd:COG1121 132 LADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVL 210
|
..
gi 1633185471 238 VM 239
Cdd:COG1121 211 LL 212
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
42-260 |
1.03e-40 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 142.54 E-value: 1.03e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtKMQEVKRRETRKEIQMIFQDplASLNPRMSV 121
Cdd:PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-NDPKVDERLIRQEAGMVFQQ--FYLFPHLTA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAepletFFP----ELSKQEVKDRVKEMMAKVGLLPNViNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:PRK09493 95 LENVM-----FGPlrvrGASKEEAEKQARELLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 198 VSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHP 260
Cdd:PRK09493 169 PELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQ 230
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
38-258 |
2.02e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 141.42 E-value: 2.02e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRreTRKEIQMIFQDPlaSLNP 117
Cdd:cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI--ARLGIGRTFQIP--RLFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGD--IIA------EPLETFFPELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIIC 189
Cdd:cd03219 89 ELTVLEnvMVAaqartgSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIARALATDPKLLLL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 190 DEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:cd03219 168 DEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
42-239 |
3.47e-40 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 140.34 E-value: 3.47e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPLAslnPRMSV 121
Cdd:COG4619 17 SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAM---PPPEWRRQVAYVPQEPAL---WGGTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAEPletfFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:COG4619 91 RDNLPFP----FQLRERKFDRERALELLERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENT 166
|
170 180 190
....*....|....*....|....*....|....*...
gi 1633185471 202 AQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG4619 167 RRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTL 204
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
40-269 |
1.14e-39 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 143.44 E-value: 1.14e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRM 119
Cdd:PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR-----PINMMFQS--YALFPHM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:PRK11607 107 TVEQNIAFGLKQ--DKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 200 I----QAQVVNLLkelqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAV 269
Cdd:PRK11607 184 LrdrmQLEVVDIL----ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSV 253
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
41-268 |
1.72e-39 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 139.83 E-value: 1.72e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL----VEATEGQVMWLGQDLTKmQEVKRREtrkeIQMIFQDPLASLN 116
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIlpagVRQTAGRVLLDGKPVAP-CALRGRK----IATIMQNPRSAFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAEPLETffpeLSKQEVKDRVKEMMAKVGL--LPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK10418 94 PLHTMHTHARETCLA----LGKPADDATLTAALEAVGLenAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 195 ALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSA 268
Cdd:PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
39-253 |
2.75e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 138.84 E-value: 2.75e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFQDPlaSLNPR 118
Cdd:COG4555 15 PALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRK----EPREARRQIGVLPDER--GLYDR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAepletFFPEL---SKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:COG4555 89 LTVRENIR-----YFAELyglFDEELKKRIEELIELLGL-EEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNG 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 196 LDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:COG4555 163 LDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
12-242 |
3.12e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 139.02 E-value: 3.12e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:COG0411 4 LLEVRGLTKRFG-------------GLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 MQEVKRreTRKEIQMIFQdpLASLNPRMSVGD-------------IIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPnV 158
Cdd:COG0411 71 LPPHRI--ARLGIARTFQ--NPRLFPELTVLEnvlvaaharlgrgLLAALLRLPRARREEREARERAEELLERVGLAD-R 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 159 INRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:COG0411 146 ADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVV 225
|
....
gi 1633185471 239 MYLG 242
Cdd:COG0411 226 LDFG 229
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
45-258 |
5.10e-39 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 138.22 E-value: 5.10e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLY--EGETLGVVGESGCGKSTFARaIIGLVE-ATEGQVMWLGQ--DLTKMQEVKR-RETRKEIQMIFQDplASLNPR 118
Cdd:PRK11124 20 DITLDcpQGETLVLLGPSGAGKSSLLR-VLNLLEmPRSGTLNIAGNhfDFSKTPSDKAiRELRRNVGMVFQQ--YNLWPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGD-IIAEPLETFfpELSKQEVKDRVKEMMAKVGLLPNViNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:PRK11124 97 LTVQQnLIEAPCRVL--GLSKDQALARAEKLLERLRLKPYA-DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 198 VSIQAQVVNLLKELQkELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAlFSDPK 258
Cdd:PRK11124 174 PEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FTQPQ 232
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
39-242 |
2.66e-38 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 133.52 E-value: 2.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqeVKRRETRKEIQMIFQdplaslnpr 118
Cdd:cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK---LPLEELRRRIGYVPQ--------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 msvgdiiaepletffpelskqevkdrvkemmakvgllpnvinrypheFSGGQCQRIGIARALILKPKMIICDEPVSALDV 198
Cdd:cd00267 81 -----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1633185471 199 SIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:cd00267 114 ASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
45-268 |
2.69e-38 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 136.04 E-value: 2.69e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRMSVGDI 124
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAER-----PVSMLFQE--NNLFPHLTVAQN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 IAEPLEtffP--ELSKQEvKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:COG3840 92 IGLGLR---PglKLTAEQ-RAQVEQALERVGLA-GLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQ 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 203 QVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSA 268
Cdd:COG3840 167 EMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYLGI 232
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
36-239 |
3.88e-38 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 134.97 E-value: 3.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevkrretRKEIQMIFQDPLASL 115
Cdd:cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE--------RKRIGYVPQRRSIDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIIAEPLET---FFPELSKqEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:cd03235 82 DFPISVRDVVLMGLYGhkgLFRRLSK-ADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03235 160 FAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
31-254 |
4.85e-38 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 137.10 E-value: 4.85e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 31 PWAKpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmQEVKRRETRKEIQMIFQD 110
Cdd:PRK13637 17 PFEK----KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD-KKVKLSDIRKKVGLVFQY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 PLASLNPRMSVGDIiaepleTFFPE---LSKQEVKDRVKEMMAKVGLLPNVI-NRYPHEFSGGQCQRIGIARALILKPKM 186
Cdd:PRK13637 92 PEYQLFEETIEKDI------AFGPInlgLSEEEIENRVKRAMNIVGLDYEDYkDKSPFELSGGQKRRVAIAGVVAMEPKI 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 187 IICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALF 254
Cdd:PRK13637 166 LILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
43-267 |
1.19e-37 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 134.88 E-value: 1.19e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIiGLVEATEGQVMWLGQ---DLTK---MQEVKRRETRKEIQMIFQDplASLN 116
Cdd:PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCI-NLLEQPEAGTIRVGDitiDTARslsQQKGLIRQLRQHVGFVFQN--FNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 P-RMSVGDIIAEPLetFFPELSKQEVKDRVKEMMAKVGLLPNViNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK11264 98 PhRTVLENIIEGPV--IVKGEPKEEATARARELLAKVGLAGKE-TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 196 LDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMS 267
Cdd:PRK11264 175 LDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLE 245
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
13-242 |
1.60e-37 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 132.14 E-value: 1.60e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKm 92
Cdd:cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 93 qevKRRETRKEIQMIFQDPlaslnprmsvgdiiaepleTFFPELSkqevkdrVKEMMakvgllpnvinryphEFSGGQCQ 172
Cdd:cd03230 67 ---EPEEVKRRIGYLPEEP-------------------SLYENLT-------VRENL---------------KLSGGMKQ 102
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 173 RIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
50-239 |
2.61e-37 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 132.80 E-value: 2.61e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 50 EGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDL-TKMQEVKRRETRKEIQMIFQDplASLNPRMSVgdiiAEP 128
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLfDSRKKINLPPQQRKIGLVFQQ--YALFPHLNV----REN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 129 LETFFPELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLL 208
Cdd:cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174
|
170 180 190
....*....|....*....|....*....|.
gi 1633185471 209 KELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
35-253 |
4.92e-37 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 140.74 E-value: 4.92e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDPL-- 112
Cdd:COG2274 485 GDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDL---RQIDPASLRRQIGVVLQDVFlf 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 -ASL--NprMSVGDiiaepletffPELSKQEVKDRVKemmaKVGLLPnVINRYPH-----------EFSGGQCQRIGIAR 178
Cdd:COG2274 562 sGTIreN--ITLGD----------PDATDEEIIEAAR----LAGLHD-FIEALPMgydtvvgeggsNLSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 179 ALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEEL 696
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
13-263 |
7.03e-37 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 132.73 E-value: 7.03e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE-----ATEGQVMWLGQ 87
Cdd:PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 DLTKMQEVkrrETRKEIQMIFQDPlaSLNPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRY---PH 164
Cdd:PRK14247 71 DIFKMDVI---ELRRRVQMVFQIP--NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLdapAG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 165 EFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVMYLGNA 244
Cdd:PRK14247 146 KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
250
....*....|....*....
gi 1633185471 245 VELGESDALFSDPKHPYTK 263
Cdd:PRK14247 224 VEWGPTREVFTNPRHELTE 242
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
51-274 |
7.37e-37 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 135.89 E-value: 7.37e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEA--TEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRMSVGDIIAEP 128
Cdd:TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGFVKAagLTGRIAIADRDLTHAPPHKR-----GLALLFQN--YALFPHLKVEDNVAFG 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 129 LETffPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLL 208
Cdd:TIGR03258 104 LRA--QKMPKADIAERVADALKLVGL-GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 209 KELQKEL-GLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVPIPDP 274
Cdd:TIGR03258 181 AALHEELpELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILPA 247
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
45-264 |
1.08e-36 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 132.06 E-value: 1.08e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLY--EGETLGVVGESGCGKSTFARaIIGLVE-ATEGQVMWLGQDL---TKMQEVKRRETRKEIQMIFQDplASLNPR 118
Cdd:COG4161 20 DINLEcpSGETLVLLGPSGAGKSSLLR-VLNLLEtPDSGQLNIAGHQFdfsQKPSEKAIRLLRQKVGMVFQQ--YNLWPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGD-IIAEPLETFfpELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:COG4161 97 LTVMEnLIEAPCKVL--GLSKEQAREKAMKLLARLRL-TDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 198 VSIQAQVVNLLKELQkELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALfsdpKHPYTKA 264
Cdd:COG4161 174 PEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDASHF----TQPQTEA 235
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
35-239 |
1.21e-36 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 129.81 E-value: 1.21e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDPlas 114
Cdd:cd03228 12 GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL---RDLDLESLRKNIAYVPQDP--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 lnprmsvgdiiaepleTFFpelskqevKDRVKEmmakvgllpNVinrypheFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:cd03228 86 ----------------FLF--------SGTIRE---------NI-------LSGGQRQRIAIARALLRDPPILILDEATS 125
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 195 ALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:cd03228 126 ALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVL 167
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
7-271 |
1.76e-36 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 135.55 E-value: 1.76e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSKELLLDikdlKVHFSIAAKSAwpwakpsnlkavdgvDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLG 86
Cdd:PRK10070 29 LSKEQILE----KTGLSLGVKDA---------------SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLTKMQEVKRRETR-KEIQMIFQDplASLNPRMSVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHE 165
Cdd:PRK10070 90 VDIAKISDAELREVRrKKIAMVFQS--FALMPHMTVLDNTAFGME--LAGINAEERREKALDALRQVGL-ENYAHSYPDE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 166 FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAV 245
Cdd:PRK10070 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
250 260
....*....|....*....|....*.
gi 1633185471 246 ELGESDALFSDPKHPYTKALMSAVPI 271
Cdd:PRK10070 245 QVGTPDEILNNPANDYVRTFFRGVDI 270
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
13-264 |
2.59e-36 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 131.31 E-value: 2.59e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE-----ATEGQVMWLGQ 87
Cdd:COG1117 12 IEVRNLNVYYG-------------DKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDlipgaRVEGEILLDGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 DLTKmQEVKRRETRKEIQMIFQDPlaslNP-RMSVGDIIAepletFFPEL----SKQEVKDRVKEMMAKVGLLPNV---I 159
Cdd:COG1117 79 DIYD-PDVDVVELRRRVGMVFQKP----NPfPKSIYDNVA-----YGLRLhgikSKSELDEIVEESLRKAALWDEVkdrL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 160 NRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG1117 149 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD--YTIVIVTHNMQQAARVSDYTAFF 226
|
250 260
....*....|....*....|....*
gi 1633185471 240 YLGNAVELGESDALFSDPKHPYTKA 264
Cdd:COG1117 227 YLGELVEFGPTEQIFTNPKDKRTED 251
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
44-263 |
3.95e-36 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 130.94 E-value: 3.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVE------ATEGQVMWLGQDLTKMQEVKrreTRKEIQMIFQDPlaSLNP 117
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDAIK---LRKEVGMVFQQP--NPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIAEPLETFFPElSKQEVKDRVKEMMAKVGLLPNVINRY---PHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK14246 104 HLSIYDNIAYPLKSHGIK-EKREIKKIVEECLRKVGLWKEVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 195 ALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTK 263
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
35-239 |
6.43e-36 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 129.06 E-value: 6.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRET---RKEIQMIFQDP 111
Cdd:cd03292 11 PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL---RGRAIpylRRKIGVVFQDF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LasLNPRMSVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:cd03292 88 R--LLPDRNVYENVAFALEVT--GVPPREIRKRVPAALELVG-LSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIAL 209
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
43-267 |
2.34e-35 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 128.93 E-value: 2.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEV----------KRRETRKEIQMIFQDpl 112
Cdd:PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKdgqlkvadknQLRLLRTRLTMVFQH-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 ASLNPRMSVGDIIAE-PLETFfpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:PRK10619 101 FNLWSHMTVLENVMEaPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMS 267
Cdd:PRK10619 179 PTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLK 253
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
41-255 |
3.01e-35 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 129.47 E-value: 3.01e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDPLASLnPRMS 120
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLT---EENVWDIRHKIGMVFQNPDNQF-VGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:PRK13650 99 VEDDVAFGLEN--KGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKhISDRVLVMYLGNAVELGESDALFS 255
Cdd:PRK13650 176 RLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS 229
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
41-263 |
3.68e-35 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 128.42 E-value: 3.68e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE-----ATEGQVMWLGQDLTKmQEVKRRETRKEIQMIFQDPlaSL 115
Cdd:PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIYS-PDVDPIEVRREVGMVFQYP--NP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINR---YPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRlndYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTK 263
Cdd:PRK14267 177 TANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTE 245
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
35-258 |
9.01e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 127.89 E-value: 9.01e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtKMQEVKRRETRKEIQMIFQDPLAS 114
Cdd:PRK13639 12 PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLEVRKTVGIVFQNPDDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSVGDIIAEPLETffpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK13639 91 LFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 195 ALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:PRK13639 167 GLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
41-225 |
1.05e-34 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 126.06 E-value: 1.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEA---TEGQVMWLGQDLTKMQEVKRRetrkeIQMIFQDPLasLNP 117
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTALPAEQRR-----IGILFQDDL--LFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIAepletfF---PELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:COG4136 90 HLSVGENLA------FalpPTIGRAQRRARVEQALEEAGL-AGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFS 162
|
170 180 190
....*....|....*....|....*....|.
gi 1633185471 195 ALDVSIQAQVVNLLKELQKELGLSLVFIAHD 225
Cdd:COG4136 163 KLDAALRAQFREFVFEQIRQRGIPALLVTHD 193
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
41-248 |
2.04e-34 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 124.08 E-value: 2.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQdplaslnprms 120
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL---SPKELARKIAYVPQ----------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 vgdiiaepletffpelskqevkdrvkeMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:cd03214 81 ---------------------------ALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
40-255 |
6.38e-34 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 125.90 E-value: 6.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQdplaslNPR- 118
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLS---EETVWDVRRQVGMVFQ------NPDn 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 ----MSVGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK13635 93 qfvgATVQDDVAFGLEN--IGVPREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 195 ALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFS 255
Cdd:PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
42-239 |
7.62e-34 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 124.08 E-value: 7.62e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKE-IQMIFQdplaS--LNPR 118
Cdd:COG4181 29 KGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARLRARhVGFVFQ----SfqLLPT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLEtffpELSKQEVKDRVKEMMAKVGL---LpnviNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:COG4181 105 LTALENVMLPLE----LAGRRDARARARALLERVGLghrL----DHYPAQLSGGEQQRVALARAFATEPAILFADEPTGN 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:COG4181 177 LDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRL 219
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
35-258 |
2.87e-33 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 124.12 E-value: 2.87e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlgQDLTKMQEVKR---RETRKEIQMIFQDP 111
Cdd:PRK13646 17 PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV--DDITITHKTKDkyiRPVRKRIGMVFQFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLNPRMSVGDIIAEPlETFfpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:PRK13646 95 ESQLFEDTVEREIIFGP-KNF--KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:PRK13646 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
39-242 |
4.41e-33 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 121.91 E-value: 4.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRET---RKEIQMIFQDPLASL 115
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL---KNREVpflRRQIGMIFQDHHLLM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NprMSVGDIIAEPLetFFPELSKQEVKDRVKEMMAKVGLLPNVINrYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK10908 93 D--RTVYDNVAIPL--IIAGASGDDIRRRVSAALDKVGLLDKAKN-FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1633185471 196 LDVSIQAQVVNLLKELQKeLGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:PRK10908 168 LDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
39-257 |
4.43e-33 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 125.20 E-value: 4.43e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeIQMIFQDplASLNPR 118
Cdd:PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-----VGFVFQH--YALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLeTFFPE---LSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK10851 89 MTVFDNIAFGL-TVLPRrerPNAAAIKAKVTQLLEMVQL-AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK10851 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
41-275 |
5.01e-33 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 122.19 E-value: 5.01e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrrETRKEIQMIFQDplASLNPRMS 120
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT--------EPGPDRMVVFQN--YSLLPWLT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGL-TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGEsdalfsdpkhpytkalMSAVPIPDPR 275
Cdd:TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQ----------------ILEVPFPRPR 208
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
13-257 |
7.74e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 123.21 E-value: 7.74e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSIAAKSawPWAKpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMwLGQDL--- 89
Cdd:PRK13634 1 MDITFQKVEHRYQYKT--PFER----RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVita 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 90 -TKMQEVKRreTRKEIQMIFQDPLASLNPRMSVGDIIAEPLeTFfpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSG 168
Cdd:PRK13634 74 gKKNKKLKP--LRKKVGIVFQFPEHQLFEETVEKDICFGPM-NF--GVSEEDAKQKAREMIELVGLPEELLARSPFELSG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 169 GQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
|
....*....
gi 1633185471 249 ESDALFSDP 257
Cdd:PRK13634 229 TPREIFADP 237
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
38-256 |
1.27e-32 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 126.84 E-value: 1.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVM------WLgqDLTKMQEVKRRETRKEIQMIFQDp 111
Cdd:TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNvrvgdeWV--DMTKPGPDGRGRAKRYIGILHQE- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 lASLNPRMSVGDIIAEPLETFFP-ELSKQEVKDRVK-----EMMAKvgllpNVINRYPHEFSGGQCQRIGIARALILKPK 185
Cdd:TIGR03269 374 -YDLYPHRTVLDNLTEAIGLELPdELARMKAVITLKmvgfdEEKAE-----EILDKYPDELSEGERHRVALAQVLIKEPR 447
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 186 MIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:TIGR03269 448 IVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
8-289 |
2.06e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 122.04 E-value: 2.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 8 SKELLLDikdlKVHFSIAAKSawpwakPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVM---- 83
Cdd:PRK13645 4 SKDIILD----NVSYTYAKKT------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIvgdy 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 84 WLGQDLTKMQEVKRreTRKEIQMIFQDPLASLNPRMSVGDIIAEPLETffpELSKQEVKDRVKEMMAKVGLLPNVINRYP 163
Cdd:PRK13645 74 AIPANLKKIKEVKR--LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 164 HEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGN 243
Cdd:PRK13645 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGK 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 244 AVELGESDALFSDpkhpytKALMSAVPIPDPRLE------RNKTIQMLEGDL 289
Cdd:PRK13645 229 VISIGSPFEIFSN------QELLTKIEIDPPKLYqlmyklKNKGIDLLNKNI 274
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
35-256 |
6.70e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 120.10 E-value: 6.70e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDP--- 111
Cdd:PRK13632 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN---LKEIRKKIGIIFQNPdnq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 -LASlnprmSVGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:PRK13632 96 fIGA-----TVEDDIAFGLEN--KKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLS-VVKhiSDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK13632 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDeAIL--ADKVIVFSEGKLIAQGKPKEILNN 232
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
35-253 |
7.16e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 124.87 E-value: 7.16e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDP-La 113
Cdd:COG4988 347 PGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLS---DLDPASWRRQIAWVPQNPyL- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 slnPRMSVGDIIAepletffpeLSKQEV-KDRVKEMMAKVGLLpNVINRYPH-------E----FSGGQCQRIGIARALI 181
Cdd:COG4988 423 ---FAGTIRENLR---------LGRPDAsDEELEAALEAAGLD-EFVAALPDgldtplgEggrgLSGGQAQRLALARALL 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 182 LKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:COG4988 490 RDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEEL 558
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
35-248 |
1.02e-31 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 124.89 E-value: 1.02e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDP-LA 113
Cdd:COG1132 350 PGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI---RDLTLESLRRQIGVVPQDTfLF 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SlnprMSVGDIIAepletffpeLSKQEV-KDRVKEMMAKVGLLpNVINRYPH-----------EFSGGQCQRIGIARALI 181
Cdd:COG1132 427 S----GTIRENIR---------YGRPDAtDEEVEEAAKAAQAH-EFIEALPDgydtvvgergvNLSGGQRQRIAIARALL 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 182 LKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELG 248
Cdd:COG1132 493 KDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQG 556
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
40-256 |
2.08e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 119.04 E-value: 2.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVkrRETRKEIQMIFQDPLASLnprm 119
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL--WDIRNKAGMVFQNPDNQI---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 sVGDIIAEPLeTFFPE---LSKQEVKDRVKEMMAKVGLLPnvINRY-PHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK13633 99 -VATIVEEDV-AFGPEnlgIPPEEIRERVDESLKKVGMYE--YRRHaPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDL-SVVKhiSDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK13633 175 LDPSGRREVVNTIKELNKKYGITIILITHYMeEAVE--ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
38-239 |
3.46e-31 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 117.15 E-value: 3.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVM------WLgqDLTKMQEvkrRET----RKEI--- 104
Cdd:COG4778 24 LPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILvrhdggWV--DLAQASP---REIlalrRRTIgyv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 105 -QmiFqdplasLN--PRMSVGDIIAEPLEtffpEL--SKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARA 179
Cdd:COG4778 99 sQ--F------LRviPRVSALDVVAEPLL----ERgvDREEARARARELLARLNLPERLWDLPPATFSGGEQQRVNIARG 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 180 LILKPKMIICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG4778 167 FIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDEEVREAVADRVVDV 225
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
35-256 |
4.60e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 118.41 E-value: 4.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqEVKRR---ETRKEIQMIFQDP 111
Cdd:PRK13636 16 SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI----DYSRKglmKLRESVGMVFQDP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLNPRMSVGDIIAEPLETFFPElskQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:PRK13636 92 DNQLFSASVYQDVSFGAVNLKLPE---DEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
44-257 |
5.68e-31 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 119.82 E-value: 5.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLG---QDLTKMQEV---KRRetrkeIQMIFQDplASLNP 117
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlQDSARGIFLpphRRR-----IGYVFQE--ARLFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVgdiiAEPLE---TFFPELSKQEVKDRVKEMMAKVGLLpnviNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:COG4148 91 HLSV----RGNLLygrKRAPRAERRISFDEVVELLGIGHLL----DRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 195 ALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDP 257
Cdd:COG4148 163 ALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
40-256 |
7.86e-31 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 115.99 E-value: 7.86e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRreTRKEIQMIFQDPlaSLNPRM 119
Cdd:cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER--ARAGIGYVPEGR--RIFPEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVgdiiAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:cd03224 91 TV----EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 200 IQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:cd03224 167 IVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
37-239 |
1.80e-30 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 114.66 E-value: 1.80e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqevKRRETRKEIQMIFQDPLASLn 116
Cdd:cd03226 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI------KAKERRKSIGYVMQDVDYQL- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 prmsVGDIIAEPLETFFPELSkqEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:cd03226 85 ----FTDSVREELLLGLKELD--AGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1633185471 197 DVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03226 158 DYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLL 199
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
37-245 |
3.24e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 116.36 E-value: 3.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmQEVKRR-----ETRkeiqmifqdp 111
Cdd:COG4152 13 DKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD--PEDRRRigylpEER---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 laSLNPRMSVGDIIaepleTFFPEL---SKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMII 188
Cdd:COG4152 81 --GLYPKMKVGEQL-----VYLARLkglSKAEAKRRADEWLERLG-LGDRANKKVEELSKGNQQKVQLIAALLHDPELLI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 189 CDEPVSALD-VSiqaqvVNLLKELQKEL---GLSLVFIAHDLSVVKHISDRVLVMYLGNAV 245
Cdd:COG4152 153 LDEPFSGLDpVN-----VELLKDVIRELaakGTTVIFSSHQMELVEELCDRIVIINKGRKV 208
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
55-261 |
3.66e-30 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 117.52 E-value: 3.66e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 55 GVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDL-TKMQEVKRRETRKEIQMIFQDplASLNPRMSVgdiiAEPLE--- 130
Cdd:TIGR02142 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLfDSRKGIFLPPEKRRIGYVFQE--ARLFPHLSV----RGNLRygm 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 131 TFFPELSKQEVKDRVKEMMAkvglLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKE 210
Cdd:TIGR02142 101 KRARPSERRISFERVIELLG----IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 211 LQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPY 261
Cdd:TIGR02142 177 LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
39-263 |
5.05e-30 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 115.13 E-value: 5.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE-----ATEGQVMWLGQDLTKmQEVKRRETRKEIQMIFQDPla 113
Cdd:PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNElesevRVEGRVEFFNQNIYE-RRVNLNRLRRQVSMVHPKP-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPrMSVGDIIAEPLET--FFPELskqEVKDRVKEMMAKVGL---LPNVINRYPHEFSGGQCQRIGIARALILKPKMII 188
Cdd:PRK14258 98 NLFP-MSVYDNVAYGVKIvgWRPKL---EIDDIVESALKDADLwdeIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 189 CDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMY-----LGNAVELGESDALFSDPKHPYTK 263
Cdd:PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKgnenrIGQLVEFGLTKKIFNSPHDSRTR 253
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
39-242 |
5.81e-30 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 111.75 E-value: 5.81e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQdltkmqEVKRRETRKE----IQMIFQdplas 114
Cdd:cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK------EVSFASPRDArragIAMVYQ----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 lnprmsvgdiiaepletffpelskqevkdrvkemmakvgllpnvinrypheFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:cd03216 83 ---------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTA 111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1633185471 195 ALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:cd03216 112 ALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDG 158
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
12-258 |
7.93e-30 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 113.54 E-value: 7.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK 91
Cdd:COG0410 3 MLEVENLHAGYG-------------GIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 M--QEVKRR------ETRkeiqMIFqdplaslnPRMSV-------------GDIIAEPLE---TFFPELskqevkdrvKE 147
Cdd:COG0410 70 LppHRIARLgigyvpEGR----RIF--------PSLTVeenlllgayarrdRAEVRADLErvyELFPRL---------KE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 148 MMA-KVGLLpnvinryphefSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDL 226
Cdd:COG0410 129 RRRqRAGTL-----------SGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNA 196
|
250 260 270
....*....|....*....|....*....|..
gi 1633185471 227 SVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:COG0410 197 RFALEIADRAYVLERGRIVLEGTAAELLADPE 228
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
35-258 |
1.11e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 114.93 E-value: 1.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKR-RETRKEIQMIFQDPLA 113
Cdd:PRK13641 17 PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNlKKLRKKVSLVFQFPEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSVGDIIAEPLETFFpelSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:PRK13641 97 QLFENTVLKDVEFGPKNFGF---SEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 194 SALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
44-239 |
1.27e-29 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 113.37 E-value: 1.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETR-KEIQMIFQdpLASLNPRMSVG 122
Cdd:PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRnQKLGFIYQ--FHHLLPDFTAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 DIIAEPLetFFPELSKQEVKDRVKEMMAKVGLLPNVINRyPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:PRK11629 106 ENVAMPL--LIGKKKPAEINSRALEMLAAVGLEHRANHR-PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
|
170 180 190
....*....|....*....|....*....|....*..
gi 1633185471 203 QVVNLLKELQKELGLSLVFIAHDLSVVKHISdRVLVM 239
Cdd:PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMS-RQLEM 218
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
43-268 |
1.89e-29 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 113.36 E-value: 1.89e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmWLGQDLTKMQEVKRRET----RKEIQ-------MIFQdp 111
Cdd:COG4598 26 GVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEI-RVGGEEIRLKPDRDGELvpadRRQLQrirtrlgMVFQ-- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 laSLN--PRMSV-GDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMII 188
Cdd:COG4598 103 --SFNlwSHMTVlENVIEAPVHVL--GRPKAEAIERAEALLAKVGL-ADKRDAYPAHLSGGQQQRAAIARALAMEPEVML 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 189 CDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSA 268
Cdd:COG4598 178 FDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGNPKSERLRQFLSS 256
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
35-257 |
2.17e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 113.54 E-value: 2.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQ---DLTKMQEVkrretRKEIQMIFQDP 111
Cdd:PRK13644 12 PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIdtgDFSKLQGI-----RKLVGIVFQNP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLnprmsVGDIIAEPLeTFFPE---LSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMII 188
Cdd:PRK13644 87 ETQF-----VGRTVEEDL-AFGPEnlcLPPIEIRKRVDRALAEIG-LEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 189 CDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVkHISDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
39-239 |
2.91e-29 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 117.04 E-value: 2.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGqdltkmQEVKRRETR----KEIQMIFQDPlaS 114
Cdd:COG1129 18 KALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDG------EPVRFRSPRdaqaAGIAIIHQEL--N 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSVGDIIA---EPLETFFpeLSKQEVKDRVKEMMAKVGLlpnVINryPH----EFSGGQCQRIGIARALILKPKMI 187
Cdd:COG1129 90 LVPNLSVAENIFlgrEPRRGGL--IDWRAMRRRARELLARLGL---DID--PDtpvgDLSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 188 ICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG1129 163 ILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVL 213
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
40-253 |
3.29e-29 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 111.85 E-value: 3.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRreTRKEI------QMIFqdpla 113
Cdd:TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER--ARAGIayvpqgREIF----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 slnPRMSVgdiiAEPLETFFPEL--SKQEVKDRV-------KEMMA-KVGLLpnvinryphefSGGQCQRIGIARALILK 183
Cdd:TIGR03410 88 ---PRLTV----EENLLTGLAALprRSRKIPDEIyelfpvlKEMLGrRGGDL-----------SGGQQQQLAIARALVTR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 184 PKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
42-225 |
8.18e-29 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 110.26 E-value: 8.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeiQMIFQDPLASLNPRMSV 121
Cdd:COG4133 19 SGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRR------RLAYLGHADGLKPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAepletFFPELSKQEV-KDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:COG4133 93 RENLR-----FWAALYGLRAdREAIDEALEAVGLAG-LADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAG 166
|
170 180
....*....|....*....|....*
gi 1633185471 201 QAQVVNLLKElQKELGLSLVFIAHD 225
Cdd:COG4133 167 VALLAELIAA-HLARGGAVLLTTHQ 190
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
42-237 |
1.02e-28 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 111.31 E-value: 1.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrrETRKEIQMIFQDplASLNPRMSV 121
Cdd:PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA--------EAREDTRLMFQD--ARLLPWKKV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAEPLetffpelsKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:PRK11247 99 IDNVGLGL--------KGQWRDAALQALAAVGL-ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 1633185471 202 AQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVL 237
Cdd:PRK11247 170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVL 205
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
9-262 |
1.08e-28 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 111.02 E-value: 1.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 9 KELLLDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAI------IGLVEATeGQV 82
Cdd:PRK14239 2 TEPILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmndlNPEVTIT-GSI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 83 MWLGQDLTKmQEVKRRETRKEIQMIFQDPlaslNP-RMSVGD---------------IIAEPLETFFPELSK-QEVKDRV 145
Cdd:PRK14239 68 VYNGHNIYS-PRTDTVDLRKEIGMVFQQP----NPfPMSIYEnvvyglrlkgikdkqVLDEAVEKSLKGASIwDEVKDRL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 146 KEmmAKVGLlpnvinryphefSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVfiAHD 225
Cdd:PRK14239 143 HD--SALGL------------SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLV--TRS 206
|
250 260 270
....*....|....*....|....*....|....*..
gi 1633185471 226 LSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYT 262
Cdd:PRK14239 207 MQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKET 243
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
32-289 |
1.19e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 111.72 E-value: 1.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 32 WAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkrRETRKEIQMIFQDP 111
Cdd:PRK13642 14 YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV---WNLRRKIGMVFQNP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLnPRMSVGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:PRK13642 91 DNQF-VGATVEDDVAFGMEN--QGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDPKH--------PYTK 263
Cdd:PRK13642 167 STSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDmveigldvPFSS 245
|
250 260 270
....*....|....*....|....*....|.
gi 1633185471 264 ALM-----SAVPIPDPRLERNKTIQMLEGDL 289
Cdd:PRK13642 246 NLMkdlrkNGFDLPEKYLSEDELVELLADKL 276
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
40-256 |
2.55e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 110.61 E-value: 2.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDPLASLnprm 119
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN---FEKLRKHIGIVFQNPDNQF---- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 sVGDII----AEPLETFfpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK13648 97 -VGSIVkydvAFGLENH--AVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK13648 173 LDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDH 232
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
29-253 |
4.01e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 114.48 E-value: 4.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 29 AWPwakPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETrkeIQMIF 108
Cdd:COG4987 342 RYP---GAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR---IAVVP 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 109 QDP---LASL--NPRMsvGDiiaepletffPELSKQEVKdrvkEMMAKVGLLPnVINRYPH-------E----FSGGQCQ 172
Cdd:COG4987 416 QRPhlfDTTLreNLRL--AR----------PDATDEELW----AALERVGLGD-WLAALPDgldtwlgEggrrLSGGERR 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 173 RIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELGESDA 252
Cdd:COG4987 479 RLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLERM-DRILVLEDGRIVEQGTHEE 555
|
.
gi 1633185471 253 L 253
Cdd:COG4987 556 L 556
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
45-248 |
6.66e-28 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 107.96 E-value: 6.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRMSVGDI 124
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR-----PVSMLFQE--NNLFAHLTVEQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 IAEPLEtffPELSKQEV-KDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQ 203
Cdd:cd03298 91 VGLGLS---PGLKLTAEdRQAIEVALARVGL-AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 204 VVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03298 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
35-258 |
7.36e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 110.18 E-value: 7.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQD--------------------LTKMQE 94
Cdd:PRK13651 17 PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDeknkkktkekekvleklviqKTRFKK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 95 VKR-RETRKEIQMIFQDPLASLNPRMSVGDIIAEPLETffpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQR 173
Cdd:PRK13651 97 IKKiKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 174 IGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:PRK13651 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDI 252
|
....*
gi 1633185471 254 FSDPK 258
Cdd:PRK13651 253 LSDNK 257
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
37-239 |
7.87e-28 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 107.66 E-value: 7.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGeTLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevkRRETRKEIQMIFQDPlaSLN 116
Cdd:cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ----PQKLRRRIGYLPQEF--GVY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVgdiiAEPLET--FFPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:cd03264 85 PNFTV----REFLDYiaWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 195 ALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03264 160 GLDPEERIRFRNLLSELGED--RIVILSTHIVEDVESLCNQVAVL 202
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
40-225 |
8.10e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 109.18 E-value: 8.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmQEVKRretrkeiQMIFQDplASLNPRM 119
Cdd:COG4525 22 ALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PGADR-------GVVFQK--DALLPWL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:COG4525 92 NVLDNVAFGLR--LRGVPKAERRARAEELLALVGL-ADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDAL 168
|
170 180
....*....|....*....|....*.
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHD 225
Cdd:COG4525 169 TREQMQELLLDVWQRTGKGVFLITHS 194
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
244-329 |
8.26e-28 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 103.98 E-value: 8.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 244 AVELGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIqmlEGDLPSPINPPSGCVFRTRCPQATEACAQTKP-TIQGD 322
Cdd:TIGR01727 2 IVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDRKLISI---PGEVPSLINLPSGCRFYPRCPYAQDECRKEPPaLVEIA 78
|
....*..
gi 1633185471 323 DVHAVSC 329
Cdd:TIGR01727 79 EGHRVAC 85
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
12-239 |
1.02e-27 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 107.86 E-value: 1.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVHFSIAAKSAwpwakpSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIG--LVEATEGQVMWLGQ-- 87
Cdd:TIGR02324 1 LLEVEDLSKTFTLHQQGG------VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAnyLPDSGRILVRHEGAwv 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 DLTKMQEVKRRETRK-EIQMIFQdpLASLNPRMSVGDIIAEPL-ETFFPelsKQEVKDRVKEMMAKVGLLPNVINRYPHE 165
Cdd:TIGR02324 75 DLAQASPREVLEVRRkTIGYVSQ--FLRVIPRVSALEVVAEPLlERGVP---REAARARARELLARLNIPERLWHLPPAT 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 166 FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-KARGAALIGIFHDEEVRELVADRVMDV 222
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
34-255 |
1.14e-27 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 107.96 E-value: 1.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqeVKRRETRKEIQMIFQ---- 109
Cdd:cd03252 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL---ADPAWLRRQVGVVLQenvl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 110 ------DPLASLNPRMSVGDII-------AEPLETFFPELSKQEVKDRvkemmaKVGLlpnvinryphefSGGQCQRIGI 176
Cdd:cd03252 88 fnrsirDNIALADPGMSMERVIeaaklagAHDFISELPEGYDTIVGEQ------GAGL------------SGGQRQRIAI 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 177 ARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFS 255
Cdd:cd03252 150 ARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
13-248 |
1.49e-27 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 107.85 E-value: 1.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLkvHFSIAAKsawpwakpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL--VEATEGQVMWLGQDLT 90
Cdd:COG0396 1 LEIKNL--HVSVEGK-----------EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHpkYEVTSGSILLDGEDIL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 91 KMqEVKRReTRKEIQMIFQDPLASlnPRMSVGDII-----AEPLEtffpELSKQEVKDRVKEMMAKVGLLPNVINRYPHE 165
Cdd:COG0396 68 EL-SPDER-ARAGIFLAFQYPVEI--PGVSVSNFLrtalnARRGE----ELSAREFLKLLKEKMKELGLDEDFLDRYVNE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 166 -FSGGQCQRIGIARALILKPKMIICDEPVSALDV-SIQAqVVNLLKELQKElGLSLVFIAHDLSVVKHIS-DRVLVMYLG 242
Cdd:COG0396 140 gFSGGEKKRNEILQMLLLEPKLAILDETDSGLDIdALRI-VAEGVNKLRSP-DRGILIITHYQRILDYIKpDFVHVLVDG 217
|
....*.
gi 1633185471 243 NAVELG 248
Cdd:COG0396 218 RIVKSG 223
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
40-253 |
1.65e-27 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 107.07 E-value: 1.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFQDPlaslnprm 119
Cdd:cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR----EPREVRRRIGIVFQDL-------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIA--EPLETF--FPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:cd03265 83 SVDDELTgwENLYIHarLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
45-255 |
3.87e-27 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 106.59 E-value: 3.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRMSVGDI 124
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRR-----PVSMLFQE--NNLFSHLTVAQN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 IAEPLEtffPEL---SKQevKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:PRK10771 92 IGLGLN---PGLklnAAQ--REKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 202 AQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFS 255
Cdd:PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
44-258 |
4.11e-27 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 109.35 E-value: 4.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQdltKMQEVKRREtrKEIQMIFQDplASLNPRMSVGD 123
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK---RMNDVPPAE--RGVGMVFQS--YALYPHLSVAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 124 IIAEPLEtfFPELSKQEVKDRVKEMmAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQ 203
Cdd:PRK11000 95 NMSFGLK--LAGAKKEEINQRVNQV-AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 204 VVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:PRK11000 172 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
20-255 |
4.98e-27 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 106.47 E-value: 4.98e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 20 VHFSiaaksaWPwAKPsNLKAVDGVDVHLYEGETLGVVGESGCGKSTfaraIIGLVE----ATEGQVMWLGQDltkMQEV 95
Cdd:cd03249 6 VSFR------YP-SRP-DVPILKGLSLTIPPGKTVALVGSSGCGKST----VVSLLErfydPTSGEILLDGVD---IRDL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 96 KRRETRKEIQMIFQDP-LASlnprMSVGDIIAepletffpeLSKQEVKDRVKEMMAKVGLLPNVINRYPHEF-------- 166
Cdd:cd03249 71 NLRWLRSQIGLVSQEPvLFD----GTIAENIR---------YGKPDATDEEVEEAAKKANIHDFIMSLPDGYdtlvgerg 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 ---SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGN 243
Cdd:cd03249 138 sqlSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQ 214
|
250
....*....|..
gi 1633185471 244 AVELGESDALFS 255
Cdd:cd03249 215 VVEQGTHDELMA 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
37-239 |
7.10e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 110.50 E-value: 7.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGqdltkmQEVKRRETRKEIQ----MIFQDPl 112
Cdd:COG3845 17 GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDG------KPVRIRSPRDAIAlgigMVHQHF- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 aSLNPRMSVGD-II--AEPLETFFpeLSKQEVKDRVKEMMAKVGLlpNV-INRYPHEFSGGQCQRIGIARALILKPKMII 188
Cdd:COG3845 90 -MLVPNLTVAEnIVlgLEPTKGGR--LDRKAARARIRELSERYGL--DVdPDAKVEDLSVGEQQRVEILKALYRGARILI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 189 CDEPVSALDvsiQAQVVNLLKELQ--KELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG3845 165 LDEPTAVLT---PQEADELFEILRrlAAEGKSIIFITHKLREVMAIADRVTVL 214
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
35-248 |
7.92e-27 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 108.39 E-value: 7.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqEVKRRetrkEIQMIFQDplAS 114
Cdd:PRK11650 14 DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL-EPADR----DIAMVFQN--YA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSVGDIIAEPLETffPELSKQEVKDRVKEmMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK11650 87 LYPHMSVRENMAYGLKI--RGMPKAEIEERVAE-AARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 195 ALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:PRK11650 164 NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
37-253 |
2.13e-26 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 104.62 E-value: 2.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQD-PLasL 115
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR---EVTLDSLRRAIGVVPQDtVL--F 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NprmsvgDIIAEPLETFFPELSKQEVkdrvkEMMAKVGLLPNVINRYPHEF-----------SGGQCQRIGIARALILKP 184
Cdd:cd03253 88 N------DTIGYNIRYGRPDATDEEV-----IEAAKAAQIHDKIMRFPDGYdtivgerglklSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 185 KMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
43-225 |
2.34e-26 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 104.48 E-value: 2.34e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETR-KEIQMIFQDPL--ASLNPRM 119
Cdd:PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRaKHVGFVFQSFMliPTLNALE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVgdiiaePLETFFPELSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:PRK10584 108 NV------ELPALLRGESSRQSRNGAKALLEQLG-LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180
|
170 180
....*....|....*....|....*.
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHD 225
Cdd:PRK10584 181 TGDKIADLLFSLNREHGTTLILVTHD 206
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
36-257 |
2.86e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 105.27 E-value: 2.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDPLASL 115
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN---IREVRKFVGLVFQNPDDQI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIIAEPLETffpELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK13652 92 FSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGL-EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 196 LDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
41-269 |
3.84e-26 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 104.47 E-value: 3.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDplASLNPRMS 120
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW---SPAELARRRAVLPQH--SSLSFPFT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIA---EPLEtffpeLSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALI------LKPKMIICDE 191
Cdd:PRK13548 93 VEEVVAmgrAPHG-----LSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWLLLDE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE-SDALfsdpkhpyTKALMSAV 269
Cdd:PRK13548 167 PTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTpAEVL--------TPETLRRV 237
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
33-248 |
6.41e-26 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 102.83 E-value: 6.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 33 AKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKM-QEVKRRetrkeiqMIFQDP 111
Cdd:cd03266 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEpAEARRR-------LGFVSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLNPRMSVgdiiAEPLETF--FPELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIIC 189
Cdd:cd03266 86 STGLYDRLTA----RENLEYFagLYGLKGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 190 DEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
40-254 |
6.55e-26 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 103.07 E-value: 6.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPLAslnprm 119
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI---SRKSLRSMIGVVLQDTFL------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 sVGDIIAEPLETFFPELSKQEVKDRVKEMMAK--VGLLPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:cd03254 89 -FSGTIMENIRLGRPNATDEEVIEAAKEAGAHdfIMKLPNGYDTVLGEnggnLSQGERQLLAIARAMLRDPKILILDEAT 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 194 SALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALF 254
Cdd:cd03254 168 SNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELL 225
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
34-242 |
1.48e-25 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 101.81 E-value: 1.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFQDplA 113
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT----DRKAARQSLGYCPQF--D 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSVGDIIaepleTFFPEL---SKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:cd03263 85 ALFDELTVREHL-----RFYARLkglPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDG 208
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
39-256 |
2.84e-25 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 101.54 E-value: 2.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDP-LASlnp 117
Cdd:cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV---RDYTLASLRRQIGLVSQDVfLFN--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 rmsvgDIIAEPLETFFPELSKQEVKDrvkemMAKVGLLPNVINRYPHEF-----------SGGQCQRIGIARALILKPKM 186
Cdd:cd03251 90 -----DTVAENIAYGRPGATREEVEE-----AARAANAHEFIMELPEGYdtvigergvklSGGQRQRIAIARALLKDPPI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 187 IICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSD 256
Cdd:cd03251 160 LILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQ 226
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
39-258 |
2.89e-25 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 101.47 E-value: 2.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqEVKRReTRKEIQMIFQDplASLNPR 118
Cdd:cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL-PMHKR-ARLGIGYLPQE--ASIFRK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD- 197
Cdd:cd03218 90 LTVEENILAVLEIR--GLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDp 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 198 VSIQaQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:cd03218 167 IAVQ-DIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
245-312 |
3.18e-25 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 96.32 E-value: 3.18e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 245 VELGESDALFSDPKHPYTKALMSAVPIPDPRLERNKTIqmlEGDLPSPINPPSGCVFRTRCPQATEAC 312
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYTI---PGNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
41-244 |
3.37e-25 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 99.60 E-value: 3.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqeVKRRETRKEIQMIFQDplASLNPRmS 120
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ---WDPNELGDHVGYLPQD--DELFSG-S 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIaepletffpelskqevkdrvkemmakvgllpnvinrypheFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:cd03246 92 IAENI----------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1633185471 201 QAQVVNLLKELQKElGLSLVFIAHDLSVVKhISDRVLVMYLGNA 244
Cdd:cd03246 132 ERALNQAIAALKAA-GATRIVIAHRPETLA-SADRILVLEDGRV 173
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
34-257 |
4.49e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 102.19 E-value: 4.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLV---EATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQD 110
Cdd:PRK13640 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLlpdDNPNSKITVDGITLT---AKTVWDIREKVGIVFQN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 PLASLnPRMSVGDIIAEPLETffPELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:PRK13640 93 PDNQF-VGATVGDDVAFGLEN--RAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK13640 169 ESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKV 234
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
39-245 |
5.72e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 101.32 E-value: 5.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrKEIQMIFQDPLASLNPR 118
Cdd:COG1101 20 RALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRA---KYIGRVFQDPMMGTAPS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSvgdiIAEPL---------ETFFPELSKQEvKDRVKEMMA------------KVGLLpnvinryphefSGGQCQRIGIA 177
Cdd:COG1101 97 MT----IEENLalayrrgkrRGLRRGLTKKR-RELFRELLAtlglglenrldtKVGLL-----------SGGQRQALSLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 178 RALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAV 245
Cdd:COG1101 161 MATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
34-239 |
7.97e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.97 E-value: 7.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDltkMQEVKRRETRKEIQMIFQDP-L 112
Cdd:cd03245 13 PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD---IRQLDPADLRRNIGYVPQDVtL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 ASlnprMSVGDIIAepletffpeLSKQEVKDRvkEMM--AKVGLLPNVINRYPHEF-----------SGGQCQRIGIARA 179
Cdd:cd03245 90 FY----GTLRDNIT---------LGAPLADDE--RILraAELAGVTDFVNKHPNGLdlqigergrglSGGQRQAVALARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 180 LILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKhISDRVLVM 239
Cdd:cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD-LVDRIIVM 211
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
20-254 |
9.61e-25 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 104.78 E-value: 9.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 20 VHFsiaaksAWPwAKPsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRE 99
Cdd:TIGR02204 343 VNF------AYP-ARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL---RQLDPAE 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 100 TRKEIQMIFQDPL---ASLNPRMSVGDiiaepletffPELSKQEVKDRVKEMMAK--VGLLPNVINRYPHE----FSGGQ 170
Cdd:TIGR02204 412 LRARMALVPQDPVlfaASVMENIRYGR----------PDATDEEVEAAARAAHAHefISALPEGYDTYLGErgvtLSGGQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 171 CQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGES 250
Cdd:TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTH 558
|
....
gi 1633185471 251 DALF 254
Cdd:TIGR02204 559 AELI 562
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
39-256 |
1.92e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 100.20 E-value: 1.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKR-RETRKEIQMIFQDPLASLNP 117
Cdd:PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDiKQIRKKVGLVFQFPESQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIiaepleTFFPE---LSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK13649 101 ETVLKDV------AFGPQnfgVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 195 ALDVSIQAQVVNLLKELQkELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK13649 175 GLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
39-258 |
2.73e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 99.81 E-value: 2.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkrRETRKEIQMIFQDPLASLNPr 118
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE---KWVRSKVGLVFQDPDDQVFS- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAepletFFP---ELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK13647 95 STVWDDVA-----FGPvnmGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 196 LDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDaLFSDPK 258
Cdd:PRK13647 169 LDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS-LLTDED 229
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
51-255 |
2.87e-24 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 103.67 E-value: 2.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVkrrETRKEIQMIFQ----------DPLASLNPRMS 120
Cdd:TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA---WLRRQMGVVLQenvlfsrsirDNIALCNPGAP 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIAEP----LETFFPELsKQEVKDRVKEmmaKVGLLpnvinryphefSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:TIGR01846 560 FEHVIHAAklagAHDFISEL-PQGYNTEVGE---KGANL-----------SGGQRQRIAIARALVGNPRILIFDEATSAL 624
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 197 DVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFS 255
Cdd:TIGR01846 625 DYESEALIMRNMREICR--GRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLA 680
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
7-257 |
3.17e-24 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 99.29 E-value: 3.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 7 MSKELLlDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLG 86
Cdd:PRK11300 1 MSQPLL-SVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 87 QDLTKM--QEVkrreTRKEIQMIFQDplASLNPRMSVGD--IIAE--PLET-FFPEL--------SKQEVKDRVKEMMAK 151
Cdd:PRK11300 67 QHIEGLpgHQI----ARMGVVRTFQH--VRLFREMTVIEnlLVAQhqQLKTgLFSGLlktpafrrAESEALDRAATWLER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 152 VGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKH 231
Cdd:PRK11300 141 VGLLE-HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219
|
250 260
....*....|....*....|....*.
gi 1633185471 232 ISDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK11300 220 ISDRIYVVNQGTPLANGTPEEIRNNP 245
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
35-248 |
3.43e-24 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 102.87 E-value: 3.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDPlas 114
Cdd:TIGR02203 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL---ADYTLASLRRQVALVSQDV--- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 lnprMSVGDIIAEPLETFFPElskQEVKDRVKEMMAKVGLLpNVINRYPHEF-----------SGGQCQRIGIARALILK 183
Cdd:TIGR02203 416 ----VLFNDTIANNIAYGRTE---QADRAEIERALAAAYAQ-DFVDKLPLGLdtpigengvllSGGQRQRLAIARALLKD 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 184 PKMIICDEPVSALDVSIQAQVVNLLKELQKELgLSLVfIAHDLSVVKHiSDRVLVMYLGNAVELG 248
Cdd:TIGR02203 488 APILILDEATSALDNESERLVQAALERLMQGR-TTLV-IAHRLSTIEK-ADRIVVMDDGRIVERG 549
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
48-257 |
5.09e-24 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 102.88 E-value: 5.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 48 LYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDPLASlnpRMSVGDIIAE 127
Cdd:TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV---QYDHHYLHRQVALVGQEPVLF---SGSVRENIAY 577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 128 PLeTFFPelsKQEVKDRVKEMMAK--VGLLPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:TIGR00958 578 GL-TDTP---DEEIMAAAKAANAHdfIMEFPNGYDTEVGEkgsqLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 202 AqvvnLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDP 257
Cdd:TIGR00958 654 Q----LLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
39-239 |
6.87e-24 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 96.90 E-value: 6.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeiqmifqdplaslnpr 118
Cdd:cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR-------------------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 msVGDIIAEPleTFFPELSKQE-----------VKDRVKEMMAKVGLlpnviNRYPHE----FSGGQCQRIGIARALILK 183
Cdd:cd03268 74 --IGALIEAP--GFYPNLTAREnlrllarllgiRKKRIDEVLDVVGL-----KDSAKKkvkgFSLGMKQRLGIALALLGN 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 184 PKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGII 199
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
35-271 |
8.96e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 99.54 E-value: 8.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQV----MWLGQDLTKMQEVKR---------RETR 101
Cdd:PRK13631 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITNpyskkiknfKELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 102 KEIQMIFQDPLASLNPRMSVGDIIAEPLETffpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALI 181
Cdd:PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 182 LKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPkHPY 261
Cdd:PRK13631 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ-HII 270
|
250
....*....|
gi 1633185471 262 TKALMSAVPI 271
Cdd:PRK13631 271 NSTSIQVPRV 280
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
36-242 |
1.87e-23 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 95.19 E-value: 1.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrretrkeiqmifqdplasl 115
Cdd:cd03215 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT------------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 npRMSVGDIIAEPLeTFFPElskqevkDRVKEmmakvGLLP------NVINryPHEFSGGQCQRIGIARALILKPKMIIC 189
Cdd:cd03215 66 --RRSPRDAIRAGI-AYVPE-------DRKRE-----GLVLdlsvaeNIAL--SSLLSGGNQQKVVLARWLARDPRVLIL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 190 DEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:cd03215 129 DEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
36-248 |
2.00e-23 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 96.02 E-value: 2.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAV-DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDPL-- 112
Cdd:cd03244 14 PNLPPVlKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG---LHDLRSRISIIPQDPVlf 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 -ASLnpRMSVgdiiaEPLETFFPE-----LSKQEVKDRVKEMmakVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKM 186
Cdd:cd03244 91 sGTI--RSNL-----DPFGEYSDEelwqaLERVGLKEFVESL---PGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 187 IICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELG 248
Cdd:cd03244 161 LVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
39-238 |
3.51e-23 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 99.62 E-value: 3.51e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE--ATEGQVMWLGQDLtKMQEVKRREtRKEIQMIFQDpLAsLN 116
Cdd:PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPhgTYEGEIIFEGEEL-QASNIRDTE-RAGIAIIHQE-LA-LV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDII---AEPleTFFPELSKQEVKDRVKEMMAKVGLLPNVINRYpHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:PRK13549 95 KELSVLENIflgNEI--TPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-GNLGLGQQQLVEIAKALNKQARLLILDEPT 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 194 SALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:PRK13549 172 ASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICV 215
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
40-253 |
6.66e-23 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 99.27 E-value: 6.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTfaraIIGLV----EATEGQVMWLGQDLTKmqeVKRRETRKEIQMIFQDPLasL 115
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKST----LINLLqrvfDPQSGRILIDGTDIRT---VTRASLRRNIAVVFQDAG--L 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMsvgdiIAEPLETFFPELSKQEVKDRVKE------MMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIIC 189
Cdd:PRK13657 421 FNRS-----IEDNIRVGRPDATDEEMRAAAERaqahdfIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 190 DEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:PRK13657 496 DEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDEL 556
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
15-256 |
7.06e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 96.34 E-value: 7.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 15 IKDLKVHFSIAAKSawPWAKpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMwLGqDLTKMQE 94
Cdd:PRK13643 2 IKFEKVNYTYQPNS--PFAS----RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT-VG-DIVVSST 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 95 VKRRE---TRKEIQMIFQDPLASLNPRMSVGDIIAEPlETFfpELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQC 171
Cdd:PRK13643 74 SKQKEikpVRKKVGVVFQFPESQLFEETVLKDVAFGP-QNF--GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 172 QRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQkELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
|
....*
gi 1633185471 252 ALFSD 256
Cdd:PRK13643 230 DVFQE 234
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
40-226 |
8.44e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 95.15 E-value: 8.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltKMQEVKRRETRKEIQMIFQDplASLNPRM 119
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI--------TLDGKPVEGPGAERGVVFQN--EGLLPWR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLEtfFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:PRK11248 86 NVQDNVAFGLQ--LAGVEKMQRLEIAHQMLKKVGL-EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162
|
170 180
....*....|....*....|....*..
gi 1633185471 200 IQAQVVNLLKELQKELGLSLVFIAHDL 226
Cdd:PRK11248 163 TREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
39-248 |
1.14e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 93.88 E-value: 1.14e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmQEVKRR-----ETRkeiqmifqdpla 113
Cdd:cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD--IAARNRigylpEER------------ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSVGDIIaepleTFFPEL---SKQEVKDRVKEMMAKVGLLPNViNRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:cd03269 80 GLYPKMKVIDQL-----VYLAQLkglKKEEARRRIDEWLERLELSEYA-NKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
39-253 |
2.01e-22 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 97.89 E-value: 2.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDPLaslnpr 118
Cdd:TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL---KDIDRHTLRQFINYLPQEPY------ 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLETFFPELSKQEVKD--RVKEMMAKVGLLP----NVINRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:TIGR01193 559 IFSGSILENLLLGAKENVSQDEIWAacEIAEIKDDIENMPlgyqTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKElglSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:TIGR01193 639 TSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDEL 695
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
51-298 |
2.24e-22 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 94.45 E-value: 2.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKEIQMIFQDplASLNPRMSVGDIIAEPLE 130
Cdd:PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQS--GALFTDMNVFDNVAYPLR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 131 --TFFPElskQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLL 208
Cdd:PRK11831 111 ehTQLPA---PLLHSTVMMKLEAVGL-RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 209 KELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDpkhpytkalmsavpiPDPRLErnktiQMLEG- 287
Cdd:PRK11831 187 SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN---------------PDPRVR-----QFLDGi 246
|
250
....*....|..
gi 1633185471 288 -DLPSPINPPSG 298
Cdd:PRK11831 247 aDGPVPFRYPAG 258
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
13-248 |
4.60e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 91.82 E-value: 4.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVhfSIAAKsawpwakpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL--VEATEGQVMWLGQDLT 90
Cdd:cd03217 1 LEIKDLHV--SVGGK-----------EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDIT 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 91 KMqEVKRReTRKEIQMIFQDPLAslnprmsvgdiiaepletfFPELskqevkdRVKEMMakvgllpnvinRYPHE-FSGG 169
Cdd:cd03217 68 DL-PPEER-ARLGIFLAFQYPPE-------------------IPGV-------KNADFL-----------RYVNEgFSGG 108
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHI-SDRVLVMYLGNAVELG 248
Cdd:cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG 187
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
32-255 |
5.10e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 93.53 E-value: 5.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 32 WAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqEVKRR---ETRKEIQMIF 108
Cdd:PRK13638 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL----DYSKRgllALRQQVATVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 109 QDPlaslNPRMSVGDI---IAEPLETFfpELSKQEVKDRVKEMMAKVGllpnvINRYPHE----FSGGQCQRIGIARALI 181
Cdd:PRK13638 84 QDP----EQQIFYTDIdsdIAFSLRNL--GVPEAEITRRVDEALTLVD-----AQHFRHQpiqcLSHGQKKRVAIAGALV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 182 LKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFS 255
Cdd:PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
39-239 |
5.47e-22 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 96.86 E-value: 5.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVkrrETRKEIQMIFQDPlaslnpR 118
Cdd:TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA---DLRRNIGYVPQDP------R 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIiAEPLETFFPELSKQEvkdrvkeMM--AKVGLLPNVINRYPHEF-----------SGGQCQRIGIARALILKPK 185
Cdd:TIGR03375 550 LFYGTL-RDNIALGAPYADDEE-------ILraAELAGVTEFVRRHPDGLdmqigergrslSGGQRQAVALARALLRDPP 621
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 186 MIICDEPVSALDVSIQAQvvnLLKELQKEL-GLSLVFIAHDLSVVKhISDRVLVM 239
Cdd:TIGR03375 622 ILLLDEPTSAMDNRSEER---FKDRLKRWLaGKTLVLVTHRTSLLD-LVDRIIVM 672
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
56-262 |
7.08e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 93.24 E-value: 7.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 56 VVGESGCGKSTFARAIIGLVEATEG-----QVMWLGQDLTKMQEVkrRETRKEIQMIFQDPlaslNP-RMSVGDIIAEPL 129
Cdd:PRK14271 52 LMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNYRDV--LEFRRRVGMLFQRP----NPfPMSIMDNVLAGV 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 130 ETFfPELSKQEVKDRVKEMMAKVGLLPNVINRY---PHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVN 206
Cdd:PRK14271 126 RAH-KLVPRKEFRGVAQARLTEVGLWDAVKDRLsdsPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 207 LLKELQKElgLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYT 262
Cdd:PRK14271 205 FIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
41-251 |
7.68e-22 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 95.97 E-value: 7.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqevkRRETRKEI-QMIF---QDPlaSLN 116
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADL-------SQWDREELgRHIGylpQDV--ELF 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRmSVGDIIAEpletfFPELSKQEVKD-----RVKEMmakVGLLPN----VINRYPHEFSGGQCQRIGIARALILKPKMI 187
Cdd:COG4618 419 DG-TIAENIAR-----FGDADPEKVVAaaklaGVHEM---ILRLPDgydtRIGEGGARLSGGQRQRIGLARALYGDPRLV 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 188 ICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESD 251
Cdd:COG4618 490 VLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPSLLAA-VDKLLVLRDGRVQAFGPRD 551
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
39-256 |
9.03e-22 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 92.77 E-value: 9.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLV---EATEGQVMWLGQDLTKMQEVKR--RETRKEIQMIFQDplA 113
Cdd:PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVQREGRLARdiRKSRANTGYIFQQ--F 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSV------GDIIAEPL-ETFFPELSKQEvKDRVKEMMAKVGLLPNVINRYPhEFSGGQCQRIGIARALILKPKM 186
Cdd:PRK09984 96 NLVNRLSVlenvliGALGSTPFwRTCFSWFTREQ-KQRALQALTRVGMVHFAHQRVS-TLSGGQQQRVAIARALMQQAKV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 187 IICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK09984 174 ILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNE 243
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
38-245 |
1.23e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 95.28 E-value: 1.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE--ATEGQVMWLGQDLtKMQEVKRREtRKEIQMIFQDplASL 115
Cdd:TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPL-KASNIRDTE-RAGIVIIHQE--LTL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIIAEPLETFFP--ELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:TIGR02633 90 VPELSVAENIFLGNEITLPggRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 194 SALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAV 245
Cdd:TIGR02633 170 SSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
45-248 |
2.22e-21 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 90.31 E-value: 2.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRretrkEIQMIFQDplASLNPRMSVGDI 124
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR-----PVSMLFQE--NNLFAHLTVRQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 IAEPLEtffPELS-KQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQ 203
Cdd:TIGR01277 91 IGLGLH---PGLKlNAEQQEKVVDAAQQVGI-ADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 204 VVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:TIGR01277 167 MLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
6-251 |
2.92e-21 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 90.86 E-value: 2.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 6 KMSKELLLDIKDLKVhfSIaaksawpwakpSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIG--LVEATEGQVM 83
Cdd:CHL00131 1 MNKNKPILEIKNLHA--SV-----------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDIL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 84 WLGQDLTKMQEVKRreTRKEIQMIFQDP-------------LASLNPRMSVGDIIAEPLEtFFpelskqEVkdrVKEMMA 150
Cdd:CHL00131 68 FKGESILDLEPEER--AHLGIFLAFQYPieipgvsnadflrLAYNSKRKFQGLPELDPLE-FL------EI---INEKLK 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 151 KVGLLPNVINRYPHE-FSGGQCQRIGIARALILKPKMIICDEPVSALDVS---IQAQVVNLLKELQKelglSLVFIAHDL 226
Cdd:CHL00131 136 LVGMDPSFLSRNVNEgFSGGEKKRNEILQMALLDSELAILDETDSGLDIDalkIIAEGINKLMTSEN----SIILITHYQ 211
|
250 260
....*....|....*....|....*.
gi 1633185471 227 SVVKHIS-DRVLVMYLGNAVELGESD 251
Cdd:CHL00131 212 RLLDYIKpDYVHVMQNGKIIKTGDAE 237
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
38-248 |
4.12e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 90.02 E-value: 4.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE---ATEGQVMWLGQdltkmqEVKRRETRKEIQMIFQDplas 114
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEgggTTSGQILFNGQ------PRKPDQFQKCVAYVRQD---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 lnprmsvgDIIAEPLE-----TFFPELSKQEVK-DRVKEMMAKVGLLPNV-INRYPHEF----SGGQCQRIGIARALILK 183
Cdd:cd03234 90 --------DILLPGLTvretlTYTAILRLPRKSsDAIRKKRVEDVLLRDLaLTRIGGNLvkgiSGGERRRVSIAVQLLWD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 184 PKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
39-258 |
7.52e-21 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 89.70 E-value: 7.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRreTRKEIQMIFQDPlaSLNPR 118
Cdd:COG1137 17 TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKR--ARLGIGYLPQEA--SIFRK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD- 197
Cdd:COG1137 93 LTVEDNILAVLELR--KLSKKEREERLEELLEEFGIT-HLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFAGVDp 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 198 --VS-IQAQVVNLlkelqKELGLSlVFIA-HD----LSVVkhisDRVLVMYLGNAVELGESDALFSDPK 258
Cdd:COG1137 170 iaVAdIQKIIRHL-----KERGIG-VLITdHNvretLGIC----DRAYIISEGKVLAEGTPEEILNNPL 228
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
39-239 |
2.18e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 91.58 E-value: 2.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDPLAslnpr 118
Cdd:TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA---DADADSWRDQIAWVPQHPFL----- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 msVGDIIAEPLETFFPELSKQEVKDRVK-----EMMAKVGL-LPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:TIGR02857 408 --FAGTIAENIRLARPDASDAEIREALEragldEFVAALPQgLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVkHISDRVLVM 239
Cdd:TIGR02857 486 TAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALA-ALADRIVVL 529
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
13-248 |
2.53e-20 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 87.47 E-value: 2.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwakPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKm 92
Cdd:cd03369 7 IEVENLSVRYA-----------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIST- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 93 qeVKRRETRKEIQMIFQDP-LASLNPRMSVgDIiaepletfFPELSKQEVKD--RVKEMmakvGLlpnvinryphEFSGG 169
Cdd:cd03369 75 --IPLEDLRSSLTIIPQDPtLFSGTIRSNL-DP--------FDEYSDEEIYGalRVSEG----GL----------NLSQG 129
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELG 248
Cdd:cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIIDY-DKILVMDAGEVKEYD 205
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
51-251 |
9.27e-20 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 89.71 E-value: 9.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMIFQDplASLNPRmSVGDIIAEPLE 130
Cdd:TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL---KQWDRETFGKHIGYLPQD--VELFPG-TVAENIARFGE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 131 TFFPELSKQEVK-DRVKEMMAKvglLPN----VINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVV 205
Cdd:TIGR01842 418 NADPEKIIEAAKlAGVHELILR---LPDgydtVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1633185471 206 NLLKELQKElGLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELGESD 251
Cdd:TIGR01842 495 NAIKALKAR-GITVVVITHRPSLLGCV-DKILVLQDGRIARFGERD 538
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
40-267 |
1.46e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 86.76 E-value: 1.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARA---IIGLVEA--TEGQVMWLGQDLTKmQEVKRRETRKEIQMIFQDPlas 114
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrLNDLIPGfrVEGKVTFHGKNLYA-PDVDPVEVRRRIGMVFQKP--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 lNP-RMSVGDIIA-------------EPLETffpELSKQEVKDRVKEMMAKVGLlpnvinryphEFSGGQCQRIGIARAL 180
Cdd:PRK14243 101 -NPfPKSIYDNIAygaringykgdmdELVER---SLRQAALWDEVKDKLKQSGL----------SLSGGQQQRLCIARAI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 181 ILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHISDRVLVM---------YLGNAVELGESD 251
Cdd:PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFDRTE 244
|
250
....*....|....*.
gi 1633185471 252 ALFSDPKHPYTKALMS 267
Cdd:PRK14243 245 KIFNSPQQQATRDYVS 260
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
10-242 |
1.82e-19 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 88.93 E-value: 1.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 10 ELLLDIKDLKVhfsiaaksawpwAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDL 89
Cdd:COG3845 255 EVVLEVENLSV------------RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDI 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 90 TKMQEVKRRETRkeIQMIFQDPLAS-LNPRMSVGDIIAepLETFFPE-------LSKQEVKDRVKEMMAKVGLLPNVINR 161
Cdd:COG3845 323 TGLSPRERRRLG--VAYIPEDRLGRgLVPDMSVAENLI--LGRYRRPpfsrggfLDRKAIRAFAEELIEEFDVRTPGPDT 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 162 YPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYL 241
Cdd:COG3845 399 PARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYE 477
|
.
gi 1633185471 242 G 242
Cdd:COG3845 478 G 478
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
42-253 |
2.74e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 88.72 E-value: 2.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDPLasL-Nprms 120
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIR---DVTQASLRAAIGIVPQDTV--LfN---- 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 vgDIIAEPLETFFPELSKQEVKDRVKemMAKVgllpnvinrypHEF-------------------SGGQCQRIGIARALI 181
Cdd:COG5265 446 --DTIAYNIAYGRPDASEEEVEAAAR--AAQI-----------HDFieslpdgydtrvgerglklSGGEKQRVAIARTLL 510
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 182 LKPKMIICDEPVSALDV----SIQAQvvnlLKELQKElGLSLVfIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:COG5265 511 KNPPILIFDEATSALDSrterAIQAA----LREVARG-RTTLV-IAHRLSTIVD-ADEILVLEAGRIVERGTHAEL 579
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
41-239 |
5.01e-19 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 87.56 E-value: 5.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqevkrreTR-KEIQMIF--QDP---LAS 114
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRI-----------------ARpAGARVLFlpQRPylpLGT 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LnpRmsvgDIIAepletfFPELSKQEVKDRVKEMMAKVGLlPNVINRY------PHEFSGGQCQRIGIARALILKPKMII 188
Cdd:COG4178 442 L--R----EALL------YPATAEAFSDAELREALEAVGL-GHLAERLdeeadwDQVLSLGEQQRLAFARLLLHKPDWLF 508
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 189 CDEPVSALDVSIQAQvvnLLKELQKEL-GLSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:COG4178 509 LDEATSALDEENEAA---LYQLLREELpGTTVISVGHRSTLAAF-HDRVLEL 556
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-226 |
6.09e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 87.42 E-value: 6.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 2 GDLDKMSKELLLDIKDLKVHfsiaaksaWPWAKPsnlkAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQ 81
Cdd:TIGR02868 324 AAGAVGLGKPTLELRDLSAG--------YPGAPP----VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 82 VMWLGQDLtkmQEVKRRETRKEIQMIFQDP---LASLNPRMSVGDiiaepletffPELSKQEVKDrvkeMMAKVGL---- 154
Cdd:TIGR02868 392 VTLDGVPV---SSLDQDEVRRRVSVCAQDAhlfDTTVRENLRLAR----------PDATDEELWA----ALERVGLadwl 454
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 155 --LPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLkeLQKELGLSLVFIAHDL 226
Cdd:TIGR02868 455 raLPDGLDTVLGEggarLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
44-269 |
8.09e-19 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 84.65 E-value: 8.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmWLgqDLTKMQEVKRRETRKEIQMIFQDplASLNPRMSVGD 123
Cdd:PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WL--DGEHIQHYASKEVARRIGLLAQN--ATTPGDITVQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 124 IIAE---PLETFFPELSKQEvKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:PRK10253 101 LVARgryPHQPLFTRWRKED-EEAVTKAMQATGI-THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGEsdalfsdPKHPYTKALMSAV 269
Cdd:PRK10253 179 QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA-------PKEIVTAELIERI 240
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
36-242 |
1.04e-18 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 86.61 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTK---MQEVKRR-----ETRKEiQMI 107
Cdd:COG1129 263 SVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIrspRDAIRAGiayvpEDRKG-EGL 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 108 FQDplaslnprMSVGD-IIAEPLETF--FPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKP 184
Cdd:COG1129 342 VLD--------LSIREnITLASLDRLsrGGLLDRRRERALAEEYIKRLRIKTPSPEQPVGNLSGGNQQKVVLAKWLATDP 413
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 185 KMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:COG1129 414 KVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREG 470
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
12-239 |
1.22e-18 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 83.22 E-value: 1.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDlkVHFSIAAKsawpwakpsnlKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTk 91
Cdd:PRK10247 7 LLQLQN--VGYLAGDA-----------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 92 mqEVKRRETRKEIQMIFQDPlaslnprMSVGDIIAEPLetFFP-ELSKQEVK-DRVKEMMAKVGLLPNVINRYPHEFSGG 169
Cdd:PRK10247 73 --TLKPEIYRQQVSYCAQTP-------TLFGDTVYDNL--IFPwQIRNQQPDpAIFLDDLERFALPDTILTKNIAELSGG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITL 210
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
41-256 |
1.29e-18 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 83.60 E-value: 1.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMW-LGQDLTK--MQEVKRRetrkeIQMIFQDPLASLNP 117
Cdd:COG1119 19 LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVRlFGERRGGedVWELRKR-----IGLVSPALQLRFPR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIaepLETFF------PELSKQEvKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:COG1119 94 DETVLDVV---LSGFFdsiglyREPTDEQ-RERARELLELLGLAH-LADRPFGTLSQGEQRRVLIARALVKDPELLILDE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHdlsvvkHISD------RVLVMYLGNAVELGESDALFSD 256
Cdd:COG1119 169 PTAGLDLGARELLLALLDKLAAEGAPTLVLVTH------HVEEippgitHVLLLKDGRVVAAGPKEEVLTS 233
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
40-253 |
1.69e-18 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 86.23 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmQEVKRRETRKEIQMI------FQDPLA 113
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL---RDYTLASLRNQVALVsqnvhlFNDTIA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SlNprmsvgdiIAEPLETFFpelSKQEVkdrvkEMMAKVGLLPNVINRYPHEF-----------SGGQCQRIGIARALIL 182
Cdd:PRK11176 435 N-N--------IAYARTEQY---SREQI-----EEAARMAYAMDFINKMDNGLdtvigengvllSGGQRQRIAIARALLR 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 183 KPKMIICDEPVSALDV----SIQAQvvnlLKELQKElGLSLVfIAHDLSVVKHiSDRVLVMYLGNAVELGESDAL 253
Cdd:PRK11176 498 DSPILILDEATSALDTeserAIQAA----LDELQKN-RTSLV-IAHRLSTIEK-ADEILVVEDGEIVERGTHAEL 565
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
42-243 |
1.91e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 85.89 E-value: 1.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVM--------WLGQDLTKMQEVKRRET-------RKEIQM 106
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSipkglrigYLPQEPPLDDDLTVLDTvldgdaeLRALEA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 107 IFQDPLASLNPRMSVGDIIAEpLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKM 186
Cdd:COG0488 95 ELEELEAKLAEPDEDLERLAE-LQEEFEALGGWEAEARAEEILSGLGFPEEDLDRPVSELSGGWRRRVALARALLSEPDL 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 187 IICDEPVSALDV-SIQ--AqvvNLLKELQKelglSLVFIAHD---L-SVVKHI---SDRVLVMYLGN 243
Cdd:COG0488 174 LLLDEPTNHLDLeSIEwlE---EFLKNYPG----TVLVVSHDryfLdRVATRIlelDRGKLTLYPGN 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
38-251 |
5.82e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 84.47 E-value: 5.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL--VEATEGQVMW----------------LGQ------------ 87
Cdd:TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYhvalcekcgyverpskVGEpcpvcggtlepe 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 88 --DLTKMQEVKRRETRKEIQMIFQDPLAsLNPRMSVGDIIAEPLETFfpELSKQEVKDRVKEMMAKVGLlPNVINRYPHE 165
Cdd:TIGR03269 93 evDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDDTVLDNVLEALEEI--GYEGKEAVGRAVDLIEMVQL-SHRITHIARD 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 166 FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAV 245
Cdd:TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248
|
....*.
gi 1633185471 246 ELGESD 251
Cdd:TIGR03269 249 EEGTPD 254
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
38-270 |
1.02e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 84.01 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETRKE-IQMIFQDplASLN 116
Cdd:PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREhFGFIFQR--YHLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGDIIAEPleTFFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:PRK10535 99 SHLTAAQNVEVP--AVYAGLERKQRLLRAQELLQRLGL-EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 197 DVSIQAQVVNLLKELQkELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVelgeSDALfSDPKHPYTKALMSAVP 270
Cdd:PRK10535 176 DSHSGEEVMAILHQLR-DRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV----RNPP-AQEKVNVAGGTEPVVN 242
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
18-248 |
1.16e-17 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 79.90 E-value: 1.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 18 LKVHFSIAAKSAWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLV--EATEGQVMWLGQDLTKmqev 95
Cdd:cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRtgLGVSGEVLINGRPLDK---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 96 krRETRKEIQMIFQDplaslnprmsvgdiiaeplETFFPELSkqevkdrVKEMMAKVGLLPNVinryphefSGGQCQRIG 175
Cdd:cd03213 78 --RSFRKIIGYVPQD-------------------DILHPTLT-------VRETLMFAAKLRGL--------SGGERKRVS 121
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 176 IARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLS-VVKHISDRVLVMYLGNAVELG 248
Cdd:cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSsEIFELFDKLLLLSQGRVIYFG 194
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
13-239 |
1.27e-17 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 82.97 E-value: 1.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 13 LDIKDLKVHFSiaaksawpwakpsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKM 92
Cdd:PRK09536 4 IDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 93 QEvkrRETRKEIQMIFQDplASLNPRMSVGDIIaEPLETffPELSK----QEVKDR-VKEMMAKVGlLPNVINRYPHEFS 167
Cdd:PRK09536 71 SA---RAASRRVASVPQD--TSLSFEFDVRQVV-EMGRT--PHRSRfdtwTETDRAaVERAMERTG-VAQFADRPVTSLS 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 168 GGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLL 212
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
38-256 |
1.38e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 80.69 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVkrRETRKEIQMIFQDplASLNP 117
Cdd:PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA--KIMREAVAIVPEG--RRVFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIAepLETFFPElsKQEVKDRVKEMMakvGLLPNVINRYPHE---FSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK11614 94 RMTVEENLA--MGGFFAE--RDQFQERIKWVY---ELFPRLHERRIQRagtMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 195 ALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK11614 167 GLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
56-239 |
1.90e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 81.84 E-value: 1.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 56 VVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEV------KRRetrkeIQMIFQDplASLNPRMSV-GDI---I 125
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGiclppeKRR-----IGYVFQD--ARLFPHYKVrGNLrygM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 126 AEPLETFFpelskqevkDRVKEMMAKVGLLpnviNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVV 205
Cdd:PRK11144 102 AKSMVAQF---------DKIVALLGIEPLL----DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL 168
|
170 180 190
....*....|....*....|....*....|....
gi 1633185471 206 NLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:PRK11144 169 PYLERLAREINIPILYVSHSLDEILRLADRVVVL 202
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
39-256 |
2.23e-17 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 79.94 E-value: 2.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRreTRKEIQMIFQDplASLNPR 118
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR--ARRGIGYLPQE--ASIFRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLEtFFPELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDv 198
Cdd:PRK10895 93 LSVYDNLMAVLQ-IRDDLSAEQREDRANELMEEFHI-EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD- 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 199 siQAQVVNLLKELQ--KELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSD 256
Cdd:PRK10895 170 --PISVIDIKRIIEhlRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
38-249 |
2.82e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 82.52 E-value: 2.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkRRETRKEIQMIFQDplASLNP 117
Cdd:PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH--KLAAQLGIGIIYQE--LSVID 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGD---IIAEPLETFF--PELSKQEVKDRVKEMMAKVGLLPNvINRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:PRK09700 94 ELTVLEnlyIGRHLTKKVCgvNIIDWREMRVRAAMMLLRVGLKVD-LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:PRK09700 173 TSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
41-255 |
2.87e-17 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 80.06 E-value: 2.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkrRETRKEIQMIFQDPLAslnPR-M 119
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS---RQLARRLALLPQHHLT---PEgI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIA---EPLETFFPELSkQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:PRK11231 92 TVRELVAygrSPWLSLWGRLS-AEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 197 DVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFS 255
Cdd:PRK11231 170 DINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
48-238 |
4.73e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 81.78 E-value: 4.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 48 LYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlgqDLT---KMQEVKRretrkEIQMIFQDPLASLNPRMSvgdi 124
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP---ELKisyKPQYIKP-----DYDGTVEDLLRSITDDLG---- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 iaeplETFFpelsKQEVKDRVKemmakvglLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQV 204
Cdd:PRK13409 430 -----SSYY----KSEIIKPLQ--------LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV 492
|
170 180 190
....*....|....*....|....*....|....
gi 1633185471 205 VNLLKELQKELGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:PRK13409 493 AKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
43-239 |
1.01e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 77.90 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkrRETRKEIQMIFQDPLasLNPRmSVG 122
Cdd:cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH---KYLHSKVSLVGQEPV--LFAR-SLQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 DIIAEPLEtffpelskQEVKDRVKEMMAKVGLLPNvINRYPHEF-----------SGGQCQRIGIARALILKPKMIICDE 191
Cdd:cd03248 106 DNIAYGLQ--------SCSFECVKEAAQKAHAHSF-ISELASGYdtevgekgsqlSGGQKQRVAIARALIRNPQVLILDE 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLvfIAHDLSVVKHiSDRVLVM 239
Cdd:cd03248 177 ATSALDAESEQQVQQALYDWPERRTVLV--IAHRLSTVER-ADQILVL 221
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
40-242 |
1.13e-16 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 78.14 E-value: 1.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIF--QDPLASLNP 117
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK----RRKKFLRRIGVVFgqKTQLWWDLP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 rmsvgdiiaePLETFFP-----ELSKQEVKDRVKEM--MAKVGLLPNVINRyphEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:cd03267 112 ----------VIDSFYLlaaiyDLPPARFKKRLDELseLLDLEELLDTPVR---QLSLGQRMRAEIAAALLHEPEILFLD 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:cd03267 179 EPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
41-239 |
1.71e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 77.82 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPlaSLNPRMS 120
Cdd:COG4604 17 LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATT---PSRELAKRLAILRQEN--HINSRLT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDIIAepletF--FPElSK----QEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIAralilkpkMIIC----- 189
Cdd:COG4604 92 VRELVA-----FgrFPY-SKgrltAEDREIIDEAIAYLDLED-LADRYLDELSGGQRQRAFIA--------MVLAqdtdy 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 190 ---DEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:COG4604 157 vllDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAM 209
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
36-239 |
1.79e-16 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 76.99 E-value: 1.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQ-DLTKMQEVKRRETRKEIQMIFQDPLAs 114
Cdd:cd03290 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKnESEPSFEATRSRNRYSVAYAAQKPWL- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSVGDIIAEPLEtffpelskqevKDRVKEMMAKVGLLPNvINRYPH-----------EFSGGQCQRIGIARALILK 183
Cdd:cd03290 91 LNATVEENITFGSPFN-----------KQRYKAVTDACSLQPD-IDLLPFgdqteigergiNLSGGQRQRICVARALYQN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 184 PKMIICDEPVSALDVSI-----QAQVVNLLKELQKelglSLVFIAHDLSVVKHiSDRVLVM 239
Cdd:cd03290 159 TNIVFLDDPFSALDIHLsdhlmQEGILKFLQDDKR----TLVLVTHKLQYLPH-ADWIIAM 214
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
34-248 |
3.25e-16 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 75.43 E-value: 3.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkrrETRKEIQMIFQDP-L 112
Cdd:cd03247 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK----ALSSLISVLNQRPyL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 ASLNPRMSVGdiiaepletffpelskqevkdrvkemmakvgllpnvinrypHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:cd03247 87 FDTTLRNNLG-----------------------------------------RRFSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKElgLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELG 248
Cdd:cd03247 126 TVGLDPITERQLLSLIFEVLKD--KTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
35-237 |
5.15e-16 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 74.50 E-value: 5.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 35 PSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqevkRRETRKEIQMIFQDPlas 114
Cdd:cd03223 11 PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI--------------GMPEGEDLLFLPQRP--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 lnprmsvgdiiaepletFFPelskqevkdrvkemmakVGLLPNVINrYP--HEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:cd03223 74 -----------------YLP-----------------LGTLREQLI-YPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 193 VSALDVSIQAQVVNLLkelqKELGLSLVFIAHDLSVVKHiSDRVL 237
Cdd:cd03223 119 TSALDEESEDRLYQLL----KELGITVISVGHRPSLWKF-HDRVL 158
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
51-255 |
7.10e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 76.46 E-value: 7.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQdltkmqEVKRRETRKEIQMIFQDPLASLNPRMSVGDIIAEPLE 130
Cdd:PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ------PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 131 TFFPELSKQEVKDR--VKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLL 208
Cdd:PRK15056 107 GHMGWLRRAKKRDRqiVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1633185471 209 KELQKElGLSLVFIAHDLSVVKHISDRVlVMYLGNAVELGESDALFS 255
Cdd:PRK15056 186 RELRDE-GKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASGPTETTFT 230
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
43-270 |
7.17e-16 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 78.86 E-value: 7.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVkrrETRKEIQMIFQDP-LASLNPRMSV 121
Cdd:PLN03232 1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT---DLRRVLSIIPQSPvLFSGTVRFNI 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAEPLETFFPELSKQEVKDRVKEmmAKVGLLPNVINRyPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:PLN03232 1331 DPFSEHNDADLWEALERAHIKDVIDR--NPFGLDAEVSEG-GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 202 AQVVNLLKELQKElgLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVP 270
Cdd:PLN03232 1408 SLIQRTIREEFKS--CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
28-242 |
9.02e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 77.66 E-value: 9.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 28 SAWPWAKPsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGlveATEGQvmWLGQDLTKMQEVKRRETRKEIQ-- 105
Cdd:PRK13549 266 TAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG---AYPGR--WEGEIFIDGKPVKIRNPQQAIAqg 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 106 --MIFQD----------------PLASLNpRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGLLpnvinryphefS 167
Cdd:PRK13549 340 iaMVPEDrkrdgivpvmgvgkniTLAALD-RFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL-----------S 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 168 GGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEG 481
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
40-248 |
1.12e-15 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 74.88 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqevkrrETRKEIQMIFqDPLASLNPRM 119
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV----------------TVRGRVSSLL-GLGGGFNPEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGD---IIAEPLetffpELSKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:cd03220 100 TGREniyLNGRLL-----GLSRKEIDEKIDEIIEFSE-LGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 197 DVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELG 248
Cdd:cd03220 174 DAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
48-257 |
1.31e-15 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 78.15 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 48 LYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlgQDLTKMQEVKRRETRKEIQMIFQDPL--------------- 112
Cdd:PTZ00265 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII--NDSHNLKDINLKWWRSKIGVVSQDPLlfsnsiknnikysly 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 --------------------ASLNPRMS--------VGDIIAEPLETFFPELSK--QEVKDRVKEMMAKVGLLPNVINRY 162
Cdd:PTZ00265 486 slkdlealsnyynedgndsqENKNKRNScrakcagdLNDMSNTTDSNELIEMRKnyQTIKDSEVVDVSKKVLIHDFVSAL 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 163 PHEF-----------SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKH 231
Cdd:PTZ00265 566 PDKYetlvgsnasklSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY 645
|
250 260
....*....|....*....|....*.
gi 1633185471 232 iSDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PTZ00265 646 -ANTIFVLSNRERGSTVDVDIIGEDP 670
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
14-242 |
1.60e-15 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 77.17 E-value: 1.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 14 DIKDlkVHFSIAAKSAWPWAKPsNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGlveATEGQvmWLGQDLTKMQ 93
Cdd:TIGR02633 252 EIGD--VILEARNLTCWDVINP-HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG---AYPGK--FEGNVFINGK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 94 EVKRRETRKEIQ----MIFQD-PLASLNPRMSVG-DIIAEPLETFfpelSKQEVKDRVKEMMAKVGLLPNVINRYPHEF- 166
Cdd:TIGR02633 324 PVDIRNPAQAIRagiaMVPEDrKRHGIVPILGVGkNITLSVLKSF----CFKMRIDAAAELQIIGSAIQRLKVKTASPFl 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 -----SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYL 241
Cdd:TIGR02633 400 pigrlSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGE 478
|
.
gi 1633185471 242 G 242
Cdd:TIGR02633 479 G 479
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
40-257 |
2.20e-15 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 76.67 E-value: 2.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQevkRRETRKEIQMIFQDP-LASlnpr 118
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ---LDSWRSRLAVVSQTPfLFS---- 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 msvgDIIAEPLETFFPELSKQEVkdrvkEMMAKVGLLPNVINRYPHEF-----------SGGQCQRIGIARALILKPKMI 187
Cdd:PRK10789 403 ----DTVANNIALGRPDATQQEI-----EHVARLASVHDDILRLPQGYdtevgergvmlSGGQKQRISIARALLLNAEIL 473
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 188 ICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
39-288 |
2.75e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 75.51 E-value: 2.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFqdplaslnpr 118
Cdd:COG4586 36 EAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFK----RRKEFARRIGVVF---------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 msvG-------DIIaePLETFfpEL-------SKQEVKDRVKEMmakVGLL--PNVINRYPHEFSGGQCQRIGIARALIL 182
Cdd:COG4586 102 ---GqrsqlwwDLP--AIDSF--RLlkaiyriPDAEYKKRLDEL---VELLdlGELLDTPVRQLSLGQRMRCELAAALLH 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 183 KPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL---FSDPKh 259
Cdd:COG4586 172 RPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELkerFGPYK- 250
|
250 260
....*....|....*....|....*....
gi 1633185471 260 pyTKALMSAVPIPDPRLERNKTIQMLEGD 288
Cdd:COG4586 251 --TIVLELAEPVPPLELPRGGEVIEREGN 277
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
44-242 |
3.17e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 76.24 E-value: 3.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKR--------RETRKEIQMIFQDPLASL 115
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRlarglvylPEDRQSSGLYLDAPLAWN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIiaepleTFFPELSKQevKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK15439 362 VCALTHNRR------GFWIKPARE--NAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1633185471 196 LDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:PRK15439 434 VDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
36-267 |
3.51e-15 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 74.17 E-value: 3.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAV-DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPLA- 113
Cdd:cd03288 31 NNLKPVlKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL---PLHTLRSRLSIILQDPILf 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 ------SLNPRMSVGDiiaeplETFFPELSKQEVKDRVKEMmakVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMI 187
Cdd:cd03288 108 sgsirfNLDPECKCTD------DRLWEALEIAQLKNMVKSL---PGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 188 ICDEPVSALDVSIQaqvvNLLKE--LQKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDPKHPYTKAL 265
Cdd:cd03288 179 IMDEATASIDMATE----NILQKvvMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
..
gi 1633185471 266 MS 267
Cdd:cd03288 254 RT 255
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
43-210 |
3.61e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 72.78 E-value: 3.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRetrkeiQMIFQDPLASLNPRMSVg 122
Cdd:TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHE------NILYLGHLPGLKPELSA- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 diiAEPLeTFFPELSKQEVKDrVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:TIGR01189 91 ---LENL-HFWAAIHGGAQRT-IEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVA 164
|
....*...
gi 1633185471 203 QVVNLLKE 210
Cdd:TIGR01189 165 LLAGLLRA 172
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
48-238 |
4.09e-15 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 75.98 E-value: 4.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 48 LYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlGQDLT---KMQEVKRretrkEIQMIFQDPLASLNPRMSVGDI 124
Cdd:COG1245 363 IREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV---DEDLKisyKPQYISP-----DYDGTVEEFLRSANTDDFGSSY 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 ----IAEPLetffpelskqevkdRVKEMMakvgllpnviNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSI 200
Cdd:COG1245 435 ykteIIKPL--------------GLEKLL----------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 490
|
170 180 190
....*....|....*....|....*....|....*...
gi 1633185471 201 QAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:COG1245 491 RLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
41-242 |
4.69e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 75.81 E-value: 4.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLT--KMQE------VKRRETRKeiqmifQDPL 112
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVtrSPQDglangiVYISEDRK------RDGL 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 A---SLNPRMSVgdiiaepleTFFPELSKQEVKDRVKEMMAKVG---LLPNVinRYPH------EFSGGQCQRIGIARAL 180
Cdd:PRK10762 342 VlgmSVKENMSL---------TALRYFSRAGGSLKHADEQQAVSdfiRLFNI--KTPSmeqaigLLSGGNQQKVAIARGL 410
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 181 ILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEG 471
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
44-237 |
4.84e-15 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 73.61 E-value: 4.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqevkRRETRKEI----QMIFQDP-------- 111
Cdd:PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------------KRNGKLRIgyvpQKLYLDTtlpltvnr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 112 LASLNPRMSVGDIIaepletffPELSKQEVKDRVKEMMAKVgllpnvinryphefSGGQCQRIGIARALILKPKMIICDE 191
Cdd:PRK09544 89 FLRLRPGTKKEDIL--------PALKRVQAGHLIDAPMQKL--------------SGGETQRVLLARALLNRPQLLVLDE 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVL 237
Cdd:PRK09544 147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
51-253 |
5.46e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 73.67 E-value: 5.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkRRETRKEIQMIFQDPLASlnpRMSVGDIIAEPLE 130
Cdd:PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS--KAFARKVAYLPQQLPAAE---GMTVRELVAIGRY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 131 TFFPELSKQEVKDR--VKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLL 208
Cdd:PRK10575 112 PWHGALGRFGAADRekVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1633185471 209 KELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:PRK10575 191 HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
48-238 |
6.21e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 73.21 E-value: 6.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 48 LYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLT-KMQEVKrretrKEIQMIFQDPLASLNPRMSVGDI-- 124
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSyKPQYIK-----ADYEGTVRDLLSSITKDFYTHPYfk 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 --IAEPLEtffpelskqevkdrvkemmakvglLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:cd03237 97 teIAKPLQ------------------------IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL 152
|
170 180 190
....*....|....*....|....*....|....*.
gi 1633185471 203 QVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:cd03237 153 MASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
40-251 |
6.73e-15 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 73.19 E-value: 6.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqEVKRRetrkeiqmifqdplaslnprm 119
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV-----------EVNGR--------------------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 svgdiIAEPLET---FFPEL---------------SKQEVKDRVKEMMAKVGL-----LPnvINRYphefSGGQCQRIGI 176
Cdd:COG1134 89 -----VSALLELgagFHPELtgreniylngrllglSRKEIDEKFDEIVEFAELgdfidQP--VKTY----SSGMRARLAF 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 177 ARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:COG1134 158 AVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPE 231
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
39-239 |
3.69e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 73.11 E-value: 3.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrretrkeiqmiFQDPLASLNPR 118
Cdd:PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT-----------------FNGPKSSQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSvgdIIAEPLeTFFPELS-------KQEVKDRV-----KEMMAKVGLLPNVIN--RYPH----EFSGGQCQRIGIARAL 180
Cdd:PRK10762 81 IG---IIHQEL-NLIPQLTiaeniflGREFVNRFgridwKKMYAEADKLLARLNlrFSSDklvgELSIGEQQMVEIAKVL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1633185471 181 ILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVF 214
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
42-243 |
4.09e-14 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 73.06 E-value: 4.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMwLGQDLTkmqeVKRREtrkeiqmifQDPlaslnPRM-- 119
Cdd:PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII-YEQDLI----VARLQ---------QDP-----PRNve 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 -SVGDIIAE----------------------PLETFFPELSK-QEVKD---------RVKEMMAKVGLLPNVInryPHEF 166
Cdd:PRK11147 81 gTVYDFVAEgieeqaeylkryhdishlvetdPSEKNLNELAKlQEQLDhhnlwqlenRINEVLAQLGLDPDAA---LSSL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 SGGQCQRIGIARALILKPKMIICDEPVSALDVsiqaQVVNLLKELQKELGLSLVFIAHDLSVVKHISDR-------VLVM 239
Cdd:PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDI----ETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRivdldrgKLVS 233
|
....
gi 1633185471 240 YLGN 243
Cdd:PRK11147 234 YPGN 237
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
41-253 |
6.54e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 71.40 E-value: 6.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFQdpLASLNPRMS 120
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA----RARLARARIGVVPQ--FDNLDLEFT 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VgdiiAEPLETF--FPELSKQEVKDRVKEMMaKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDV 198
Cdd:PRK13536 131 V----RENLLVFgrYFGMSTREIEAVIPSLL-EFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 199 SIQAQVVNLLKELQKeLGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:PRK13536 206 HARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
42-208 |
1.40e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 68.68 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRREtrkeiqMIFQDPLASLNPRMSv 121
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD------LLYLGHQPGIKTELT- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 gdiiaePLE--TFFPELSKQEVKDRVKEMMAKVGL-----LPnvinryPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK13538 91 ------ALEnlRFYQRLHGPGDDEALWEALAQVGLagfedVP------VRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158
|
170
....*....|....
gi 1633185471 195 ALDVSIQAQVVNLL 208
Cdd:PRK13538 159 AIDKQGVARLEALL 172
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
40-237 |
1.63e-13 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 68.03 E-value: 1.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqevkRRETRKEIQMIFQdplaslnpRM 119
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV--------------RRAGGARVAYVPQ--------RS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDiiAEPL---ET----FFPELS-----KQEVKDRVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMI 187
Cdd:NF040873 65 EVPD--SLPLtvrDLvamgRWARRGlwrrlTRDDRAAVDDALERVGLA-DLAGRQLGELSGGQRQRALLAQGLAQEADLL 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1633185471 188 ICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVL 237
Cdd:NF040873 142 LLDEPTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELVRRADPCVL 190
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
42-246 |
1.66e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 68.83 E-value: 1.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrretrkeiqmifqdplasLNPRMSV 121
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQ------------------------FGREASL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAepletffpelSKQEVKDrVKEMMAKVGLLPNVI-NRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSi 200
Cdd:COG2401 103 IDAIG----------RKGDFKD-AVELLNAVGLSDAVLwLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQ- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1633185471 201 QAQVVNL-LKELQKELGLSLVFIAHDLSVVKHIS-DRVLVMYLGNAVE 246
Cdd:COG2401 171 TAKRVARnLQKLARRAGITLVVATHHYDVIDDLQpDLLIFVGYGGVPE 218
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
51-254 |
1.79e-13 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 71.06 E-value: 1.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEAT--EGQVMWLGQDLTKmqevkrrETRKEIQMIFQDPLasLNPRMSVGD-IIAE 127
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTK-------QILKRTGFVTQDDI--LYPHLTVREtLVFC 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 128 PLETFFPELSKQEvKDRVKE-MMAKVGLLP--NVI--NRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:PLN03211 165 SLLRLPKSLTKQE-KILVAEsVISELGLTKceNTIigNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAY 243
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 203 QVVNLLKELQKElGLSLVFIAHDLSV-VKHISDRVLVMYLGNAVELGE-SDALF 254
Cdd:PLN03211 244 RLVLTLGSLAQK-GKTIVTSMHQPSSrVYQMFDSVLVLSEGRCLFFGKgSDAMA 296
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
43-256 |
4.85e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 69.69 E-value: 4.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRETrkEIQMIFQDPLasLNPRMSVG 122
Cdd:PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL--GIYLVPQEPL--LFPNLSVK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 DIIAEPLETffPELSKQEVKDRVKEMM------AKVGLLpNVINRyphefsggqcQRIGIARALILKPKMIICDEPVSAL 196
Cdd:PRK15439 105 ENILFGLPK--RQASMQKMKQLLAALGcqldldSSAGSL-EVADR----------QIVEILRGLMRDSRILILDEPTASL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 197 dvsIQAQVVNLLKELQK--ELGLSLVFIAHDLSVVKHISDRVLVMYLGnAVELGESDALFSD 256
Cdd:PRK15439 172 ---TPAETERLFSRIREllAQGVGIVFISHKLPEIRQLADRISVMRDG-TIALSGKTADLST 229
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
50-240 |
4.98e-13 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 67.78 E-value: 4.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 50 EGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgQDLTKMQEVKRRETRKEIQMIFQDPL-----ASLNPRMSvgDI 124
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF----DDPPDWDEILDEFRGSELQNYFTKLLegdvkVIVKPQYV--DL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 IAEPLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQV 204
Cdd:cd03236 99 IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178
|
170 180 190
....*....|....*....|....*....|....*.
gi 1633185471 205 VNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMY 240
Cdd:cd03236 179 ARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
39-246 |
5.18e-13 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 69.43 E-value: 5.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEAT--EGQVMWLGQdLTKMQEVKRREtRKEIQMIFQDpLAsLN 116
Cdd:NF040905 15 KALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGsyEGEILFDGE-VCRFKDIRDSE-ALGIVIIHQE-LA-LI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSvgdiIAEPLetFF-PELSK------QEVKDRVKEMMAKVGLLPNvinryPHEFSG----GQCQRIGIARALILKPK 185
Cdd:NF040905 91 PYLS----IAENI--FLgNERAKrgvidwNETNRRARELLAKVGLDES-----PDTLVTdigvGKQQLVEIAKALSKDVK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 186 MIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVE 246
Cdd:NF040905 160 LLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
38-260 |
5.53e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 69.69 E-value: 5.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGvdvHLYEGETLGVVGESGCGKSTFARAIIGLVEAtegqvmwlgqDLTKMQEVK---RRETRKEIQMI----FQD 110
Cdd:TIGR00955 41 LKNVSG---VAKPGELLAVMGSSGAGKTTLMNALAFRSPK----------GVKGSGSVLlngMPIDAKEMRAIsayvQQD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 plaslnpRMSVGDIIAEPLETFFPEL------SKQEVKDRVKEMMAKVGLLP--NVINRYPHE---FSGGQCQRIGIARA 179
Cdd:TIGR00955 108 -------DLFIPTLTVREHLMFQAHLrmprrvTKKEKRERVDEVLQALGLRKcaNTRIGVPGRvkgLSGGERKRLAFASE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 180 LILKPKMIICDEPVSALDVSIQAQVVNLLKEL-QKelGLSLVFIAHDLSV-VKHISDRVLVMYLGNAVELG---ESDALF 254
Cdd:TIGR00955 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLaQK--GKTIICTIHQPSSeLFELFDKIILMAEGRVAYLGspdQAVPFF 258
|
....*.
gi 1633185471 255 SDPKHP 260
Cdd:TIGR00955 259 SDLGHP 264
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
57-254 |
6.83e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 69.36 E-value: 6.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 57 VGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEvkrRETRKEIQMIFQDPLaslnprmsvgdIIAeplETFFPE- 135
Cdd:PRK10790 373 VGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH---SVLRQGVAMVQQDPV-----------VLA---DTFLANv 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 136 -LSKQEVKDRVKEMMAKVGL------LPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQV 204
Cdd:PRK10790 436 tLGRDISEEQVWQALETVQLaelarsLPDGLYTPLGEqgnnLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1633185471 205 VNLLKELQKElgLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALF 254
Cdd:PRK10790 516 QQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLL 562
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
43-229 |
7.47e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 66.36 E-value: 7.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRREtrkeiqMIFQDPLASLNPRMSVg 122
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG------LLYLGHAPGIKTTLSV- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 diiAEPLETFFPELSkqevKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:cd03231 91 ---LENLRFWHADHS----DEQVEEALARVG-LNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA 162
|
170 180
....*....|....*....|....*..
gi 1633185471 203 QVVNLLKELQKELGLSLVFIAHDLSVV 229
Cdd:cd03231 163 RFAEAMAGHCARGGMVVLTTHQDLGLS 189
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
43-210 |
1.48e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 65.67 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrrETRKEIQMIFQDPLASLNPRMSVG 122
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID--------DPDVAEACHYLGHRNAMKPALTVA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 DIIAepletFFPELSKQEvKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQA 202
Cdd:PRK13539 92 ENLE-----FWAAFLGGE-ELDIAAALEAVG-LAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA 164
|
....*...
gi 1633185471 203 QVVNLLKE 210
Cdd:PRK13539 165 LFAELIRA 172
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
43-267 |
1.65e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 68.61 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDPLA-------SL 115
Cdd:PLN03130 1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---GLMDLRKVLGIIPQAPVLfsgtvrfNL 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDiiAEPLETffpeLSKQEVKDRVKEmmAKVGLLPNViNRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PLN03130 1334 DPFNEHND--ADLWES----LERAHLKDVIRR--NSLGLDAEV-SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAA 1404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 196 LDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDPKHPYTKALMS 267
Cdd:PLN03130 1405 VDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQS 1473
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
40-197 |
1.78e-12 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 68.23 E-value: 1.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqEVKRRETRKEIQMIFQdplA-SLNPR 118
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV----DAGDIATRRRVGYMSQ---AfSLYGE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVgdiiAEPLE----TFfpELSKQEVKDRVKEMMAKVGLLPnVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:NF033858 354 LTV----RQNLElharLF--HLPAAEIAARVAEMLERFDLAD-VADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTS 426
|
...
gi 1633185471 195 ALD 197
Cdd:NF033858 427 GVD 429
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
44-257 |
1.96e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 67.95 E-value: 1.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVeATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDPL---ASLNPRMS 120
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELR---ELDPESWRKHLSWVGQNPQlphGTLRDNVL 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VGDiiaepletffPELSKQEVKDRVKEMMAK--VGLLPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:PRK11174 445 LGN----------PDASDEQLQQALENAWVSefLPLLPQGLDTPIGDqaagLSVGQAQRLALARALLQPCQLLLLDEPTA 514
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 195 ALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PRK11174 515 SLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAG 574
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
51-255 |
1.97e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 66.02 E-value: 1.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEAtEGQVMWLGQDLT--KMQEVKRRETRKEIQmifQDPLASlnprMSVGDIIAEP 128
Cdd:COG4138 22 GELIHLIGPNGAGKSTLLARMAGLLPG-QGEILLNGRPLSdwSAAELARHRAYLSQQ---QSPPFA----MPVFQYLALH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 129 LEtffPELSKQEVKDRVKEMMAKVGLLPNvINRYPHEFSGGQCQRIGIARALI-------LKPKMIICDEPVSALDVSIQ 201
Cdd:COG4138 94 QP---AGASSEAVEQLLAQLAEALGLEDK-LSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLLLDEPMNSLDVAQQ 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 202 AQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFS 255
Cdd:COG4138 170 AALDRLLREL-CQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMT 222
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
44-248 |
2.59e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 68.05 E-value: 2.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqeVKRRETRKEIQMIFQDP-LASLNPRMSVg 122
Cdd:TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK---IGLHDLRFKITIIPQDPvLFSGSLRMNL- 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 diiaEPletfFPELSKQEV--KDRVKEMMAKVGLLPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPVSAL 196
Cdd:TIGR00957 1381 ----DP----FSQYSDEEVwwALELAHLKTFVSALPDKLDHECAEggenLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 197 DVS----IQAQVVNLLKElqkelgLSLVFIAHDLSVVKHISdRVLVMYLGNAVELG 248
Cdd:TIGR00957 1453 DLEtdnlIQSTIRTQFED------CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFG 1501
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
42-239 |
3.40e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 63.24 E-value: 3.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlgqdltkmqevkrretrkeiqmifqdplaslNPRMSV 121
Cdd:cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW-------------------------------GSTVKI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GdiiaepletFFPELSkqevkdrvkemmakvgllpnvinryphefsGGQCQRIGIARALILKPKMIICDEPVSALDVSIQ 201
Cdd:cd03221 66 G---------YFEQLS------------------------------GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106
|
170 180 190
....*....|....*....|....*....|....*...
gi 1633185471 202 AQVVNLLKELQKelglSLVFIAHDLSVVKHISDRVLVM 239
Cdd:cd03221 107 EALEEALKEYPG----TVILVSHDRYFLDQVATKIIEL 140
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
41-253 |
4.06e-12 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 65.98 E-value: 4.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRETRKEIQMIFQdpLASLNPRMS 120
Cdd:PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS----RARHARQRVGVVPQ--FDNLDPDFT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 121 VgdiiAEPLETF--FPELSKQEVKDRVKEMMaKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDv 198
Cdd:PRK13537 97 V----RENLLVFgrYFGLSAAAARALVPPLL-EFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD- 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 199 siqAQVVNLLKELQKEL---GLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:PRK13537 171 ---PQARHLMWERLRSLlarGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
34-242 |
8.56e-12 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 66.58 E-value: 8.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 34 KPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqEVKRRETRKEIQMIFQDPLa 113
Cdd:TIGR01257 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI----ETNLDAVRQSLGMCPQHNI- 1013
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 sLNPRMSVGDIIaepleTFFPEL---SKQEVKDRVKEMMAKVGlLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICD 190
Cdd:TIGR01257 1014 -LFHHLTVAEHI-----LFYAQLkgrSWEEAQLEMEAMLEDTG-LHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 191 EPVSALDVSIQAQVVNLLkeLQKELGLSLVFIAHDLSVVKHISDRVLVMYLG 242
Cdd:TIGR01257 1087 EPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
12-249 |
1.67e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 63.27 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 12 LLDIKDLKVhfSIAAKSAwpwakpsnlkaVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL--VEATEGQVMWLGQDL 89
Cdd:PRK09580 1 MLSIKDLHV--SVEDKAI-----------LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 90 TKMQEVKRreTRKEIQMIFQDPL------------ASLNPRMSVGDiiAEPLETFfpelskqEVKDRVKEMMAKVGLLPN 157
Cdd:PRK09580 68 LELSPEDR--AGEGIFMAFQYPVeipgvsnqfflqTALNAVRSYRG--QEPLDRF-------DFQDLMEEKIALLKMPED 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 158 VINRYPHE-FSGGQCQRIGIARALILKPKMIICDEPVSALDV---SIQAQVVNLLKELQKelglSLVFIAHDLSVVKHIS 233
Cdd:PRK09580 137 LLTRSVNVgFSGGEKKRNDILQMAVLEPELCILDESDSGLDIdalKIVADGVNSLRDGKR----SFIIVTHYQRILDYIK 212
|
250
....*....|....*..
gi 1633185471 234 -DRVLVMYLGNAVELGE 249
Cdd:PRK09580 213 pDYVHVLYQGRIVKSGD 229
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
36-245 |
2.42e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 62.28 E-value: 2.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 36 SNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVE---ATEGQVMWLGQDLTKMQEVKRRETrkeiqmIFqdpl 112
Cdd:cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEgnvSVEGDIHYNGIPYKEFAEKYPGEI------IY---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 aslnprMSVGDIiaepletFFPELSkqevkdrVKEMMAKVGLLPNviNRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:cd03233 88 ------VSEEDV-------HFPTLT-------VRETLDFALRCKG--NEFVRGISGGERKRVSIAEALVSRASVLCWDNS 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSV-VKHISDRVLVMYLGNAV 245
Cdd:cd03233 146 TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDeIYDLFDKVLVLYEGRQI 199
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
39-238 |
3.11e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 64.16 E-value: 3.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGqdltkmQEVKRRETRKEIQ----MIFQDplAS 114
Cdd:PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG------QEMRFASTTAALAagvaIIYQE--LH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 115 LNPRMSVGD-IIAEPLETFFPELSKQEVKDRVKEMMAKVGLL--PNVINRYpheFSGGQCQRIGIARALILKPKMIICDE 191
Cdd:PRK11288 90 LVPEMTVAEnLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDidPDTPLKY---LSIGQRQMVEIAKALARNARVIAFDE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLV 238
Cdd:PRK11288 167 PTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITV 212
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
51-251 |
3.47e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 62.26 E-value: 3.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEAtEGQVMWLGQDLTKMQ--EVKRRETRKEIQmifQDPLASlnprMSVgdiiAEP 128
Cdd:PRK03695 22 GEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSaaELARHRAYLSQQ---QTPPFA----MPV----FQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 129 LETFFPELS-KQEVKDRVKEMMAKVGLLPNvINRYPHEFSGGQCQRIGIArALILK------P--KMIICDEPVSALDVS 199
Cdd:PRK03695 90 LTLHQPDKTrTEAVASALNEVAEALGLDDK-LGRSVNQLSGGEWQRVRLA-AVVLQvwpdinPagQLLLLDEPMNSLDVA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 200 IQAQVVNLLKELQkELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:PRK03695 168 QQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
29-239 |
3.59e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 61.72 E-value: 3.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 29 AWPWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLtkmqevkrretrkeiqmif 108
Cdd:cd03250 9 TWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 109 qdpLASLNP---RMSVGDIIaepleTFFPELSKQEVKDRVK--------EMMAKvGLLPNV----INrypheFSGGQCQR 173
Cdd:cd03250 70 ---YVSQEPwiqNGTIRENI-----LFGKPFDEERYEKVIKacalepdlEILPD-GDLTEIgekgIN-----LSGGQKQR 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 174 IGIARALILKPKMIICDEPVSALDvsiqAQVVNLLKE--LQKELGLS--LVFIAHDLSVVKHiSDRVLVM 239
Cdd:cd03250 136 ISLARAVYSDADIYLLDDPLSAVD----AHVGRHIFEncILGLLLNNktRILVTHQLQLLPH-ADQIVVL 200
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
41-243 |
4.36e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 63.55 E-value: 4.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlGQDL-----TKMQEvkrretrkeiqmifqdplaSL 115
Cdd:COG0488 331 LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETVkigyfDQHQE-------------------EL 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSVGDIIAEpletFFPELSKQEVKDRVKEMM-------AKVGLLpnvinryphefSGGQCQRIGIARALILKPKMII 188
Cdd:COG0488 391 DPDKTVLDELRD----GAPGGTEQEVRGYLGRFLfsgddafKPVGVL-----------SGGEKARLALAKLLLSPPNVLL 455
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 189 CDEPVSALDV-SIQAqVVNLLKELQkelGlSLVFIAHDLSVVKHISDRVLVM-------YLGN 243
Cdd:COG0488 456 LDEPTNHLDIeTLEA-LEEALDDFP---G-TVLLVSHDRYFLDRVATRILEFedggvreYPGG 513
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
50-258 |
8.16e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.88 E-value: 8.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 50 EGETLGVVGESGCGKSTFARAIIGLVE----ATEGQVMWlgqdltkmQEVKRRETRKEIQMIFQDpLASLNPRMSVG--- 122
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKpnlgDYDEEPSW--------DEVLKRFRGTELQDYFKK-LANGEIKVAHKpqy 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 -DIIaepletffPELSKQEVKD---------RVKEMMAKVGLLpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEP 192
Cdd:COG1245 169 vDLI--------PKVFKGTVREllekvdergKLDELAEKLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 193 VSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYlgnavelGESDA--LFSDPK 258
Cdd:COG1245 240 SSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAILDYLADYVHILY-------GEPGVygVVSKPK 299
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
8-253 |
9.61e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 62.53 E-value: 9.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 8 SKELLLDIKDlkVHFSiaaksaWPwakPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTfaraIIGLV----EATEGQVM 83
Cdd:PRK11160 334 ADQVSLTLNN--VSFT------YP---DQPQPVLKGLSLQIKAGEKVALLGRTGCGKST----LLQLLtrawDPQQGEIL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 84 WLGQDLTKMQEVKRREtrkeiQM--------IFQDPLASlNPRmsvgdiIAEPLETffpelskqevKDRVKEMMAKVGL- 154
Cdd:PRK11160 399 LNGQPIADYSEAALRQ-----AIsvvsqrvhLFSATLRD-NLL------LAAPNAS----------DEALIEVLQQVGLe 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 155 --------LPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDL 226
Cdd:PRK11160 457 klleddkgLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRL 534
|
250 260
....*....|....*....|....*..
gi 1633185471 227 SVVKHIsDRVLVMYLGNAVELGESDAL 253
Cdd:PRK11160 535 TGLEQF-DRICVMDNGQIIEQGTHQEL 560
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
22-254 |
1.33e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 62.66 E-value: 1.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 22 FSIAAKSA-WPWAKpSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMQEVKRRET 100
Cdd:TIGR00957 635 NSITVHNAtFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 101 RKEIQMIFQDPlasLNPRMSVGDIIAEPLetfFPELSKQEVKDRVKEMMAKVGLlpnvinryphefSGGQCQRIGIARAL 180
Cdd:TIGR00957 714 SLRENILFGKA---LNEKYYQQVLEACAL---LPDLEILPSGDRTEIGEKGVNL------------SGGQKQRVSLARAV 775
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 181 ILKPKMIICDEPVSALDVSIQAQVV-NLLKELQKELGLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELGESDALF 254
Cdd:TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFeHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
31-231 |
2.25e-10 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 61.69 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 31 PWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLveategqvmW--LGQDLTKMQEVKrretrkeiqmIF 108
Cdd:TIGR00954 458 PLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL---------WpvYGGRLTKPAKGK----------LF 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 109 QDPLaslNPRMSVG---DIIAEPLETFfpELSKQEVKDRVKEMMAKVGLLPNVINR---------YPHEFSGGQCQRIGI 176
Cdd:TIGR00954 519 YVPQ---RPYMTLGtlrDQIIYPDSSE--DMKRRGLSDKDLEQILDNVQLTHILEReggwsavqdWMDVLSGGEKQRIAM 593
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 177 ARALILKPKMIICDEPVSALDVSIQAQVVNLLkelqKELGLSLVFIAHDLSVVKH 231
Cdd:TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLC----REFGITLFSVSHRKSLWKY 644
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
51-243 |
2.34e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLgqDLTKMQEVKRRETRKEIqmifqdplaslnprmsvgdiiaeple 130
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLII-------------------------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 131 tffpelskqevkdrvkemmakvgllpnvINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQV-----V 205
Cdd:smart00382 54 ----------------------------VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLllleeL 105
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1633185471 206 NLLKELQKELGLSLVFIAHDLSV-----VKHISDRVLVMYLGN 243
Cdd:smart00382 106 RLLLLLKSEKNLTVILTTNDEKDlgpalLRRRFDRRIVLLLIL 148
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
40-249 |
2.93e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 61.06 E-value: 2.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqEVKRRETRKEIQmifqdplASLNPRM 119
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----------DIKGSAALIAIS-------SGLNGQL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAepLETFFPELSKQEVKDRVKEMM--AKVGllpNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:PRK13545 101 TGIENIE--LKGLMMGLTKEKIKEIIPEIIefADIG---KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 198 VSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE 249
Cdd:PRK13545 176 QTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGD 226
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
38-239 |
6.16e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.13 E-value: 6.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTkmqevkrRETRKE-----IQMIFQDpl 112
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID-------FKSSKEalengISMVHQE-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 113 ASLNPRMSVGDII---AEPLETFFPELSK--QEVKDRVKEMMAKVGLLPNVINrypheFSGGQCQRIGIARALILKPKMI 187
Cdd:PRK10982 82 LNLVLQRSVMDNMwlgRYPTKGMFVDQDKmyRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 188 ICDEPVSALDvsiQAQVVNLLKELQK--ELGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:PRK10982 157 IMDEPTSSLT---EKEVNHLFTIIRKlkERGCGIVYISHKMEEIFQLCDEITIL 207
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
50-258 |
6.71e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 60.21 E-value: 6.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 50 EGETLGVVGESGCGKSTFARAIIGLVEA----TEGQVMWlgqdltkmQEVKRRETRKEIQMIFQDpLASLNPRMSVG--- 122
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPnlgdYEEEPSW--------DEVLKRFRGTELQNYFKK-LYNGEIKVVHKpqy 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 123 -DIIAEpletffpelskqEVKDRVKEMMAKV---GL---------LPNVINRYPHEFSGGQCQRIGIARALILKPKMIIC 189
Cdd:PRK13409 169 vDLIPK------------VFKGKVRELLKKVderGKldevverlgLENILDRDISELSGGELQRVAIAAALLRDADFYFF 236
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 190 DEPVSALDVSIQAQVVNLLKELQKelGLSLVFIAHDLSVVKHISDRVLVMYlgnavelGESDA--LFSDPK 258
Cdd:PRK13409 237 DEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY-------GEPGAygVVSKPK 298
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
39-239 |
1.62e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 58.64 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 39 KAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLT---KMQEVKR-----RETRKEIQMIfqd 110
Cdd:PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprsPLDAVKKgmayiTESRRDNGFF--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 PLASLNPRMSvgdiIAEPLET--------FFPELSKQEVKDRVKEMMAkvgLLPNVINRYPHEFSGGQCQRIGIARALIL 182
Cdd:PRK09700 354 PNFSIAQNMA----ISRSLKDggykgamgLFHEVDEQRTAENQRELLA---LKCHSVNQNITELSGGNQQKVLISKWLCC 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 183 KPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVM 239
Cdd:PRK09700 427 CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVF 482
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
155-238 |
4.34e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.12 E-value: 4.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 155 LPNV----INRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVK 230
Cdd:PTZ00265 1344 LPNKydtnVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
|
....*...
gi 1633185471 231 HiSDRVLV 238
Cdd:PTZ00265 1424 R-SDKIVV 1430
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
51-252 |
1.09e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 56.07 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQ--DLTKMQEVKRR------ETRKEIQMIfqdPLASLNPRMSV- 121
Cdd:PRK11288 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKpiDIRSPRDAIRAgimlcpEDRKAEGII---PVHSVADNINIs 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 --------GDIIAEPLETffpELSKQEVKD-RVKEMMA--KVGLLpnvinryphefSGGQCQRIGIARALILKPKMIICD 190
Cdd:PRK11288 356 arrhhlraGCLINNRWEA---ENADRFIRSlNIKTPSReqLIMNL-----------SGGNQQKAILGRWLSEDMKVILLD 421
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 191 EPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGN-AVELGESDA 252
Cdd:PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRiAGELAREQA 483
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
50-240 |
1.32e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 53.73 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 50 EGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlgqdltkmqevkrretrkeiqmifqdplaslnprmsvgdiiaePL 129
Cdd:cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-------------------------------------------DG 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 130 ETffPELSKQEVKdrvkemmakvgllpnvinrypheFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLK 209
Cdd:cd03222 61 IT--PVYKPQYID-----------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR 115
|
170 180 190
....*....|....*....|....*....|.
gi 1633185471 210 ELQKELGLSLVFIAHDLSVVKHISDRVLVMY 240
Cdd:cd03222 116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
45-274 |
1.44e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 55.79 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQvmwLGQDLTKMQEVKRRETRKEIQMIFQDplasLNPrmsvgDI 124
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE---RQSQFSHITRLSFEQLQKLVSDEWQR----NNT-----DM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 125 IAEPLETF---FPELSKQEVKD--RVKEMMAKVGLLPNVINRYPHeFSGGQCQRIGIARALILKPKMIICDEPVSALDVS 199
Cdd:PRK10938 91 LSPGEDDTgrtTAEIIQDEVKDpaRCEQLAQQFGITALLDRRFKY-LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 200 IQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGE-----SDALFSDPKHPYTkalMSAVPIPDP 274
Cdd:PRK10938 170 SRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEreeilQQALVAQLAHSEQ---LEGVQLPEP 245
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
43-248 |
2.53e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 55.56 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 43 GVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKMqevKRRETRKEIQMIFQDP-LASLNPRMSV 121
Cdd:PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY---GLRELRRQFSMIPQDPvLFDGTVRQNV 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 gdiiaEPletfFPELSKQEVKdRVKEMmakVGLLPNV------INRYPHE----FSGGQCQRIGIARALILK-PKMIICD 190
Cdd:PTZ00243 1405 -----DP----FLEASSAEVW-AALEL---VGLRERVasesegIDSRVLEggsnYSVGQRQLMCMARALLKKgSGFILMD 1471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 191 EPVS----ALDVSIQAQVVNLLKelqkelGLSLVFIAHDLSVVKHIsDRVLVMYLGNAVELG 248
Cdd:PTZ00243 1472 EATAnidpALDRQIQATVMSAFS------AYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMG 1526
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
31-251 |
5.95e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 52.90 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 31 PWAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmwlgqdltkmqevkrrETRKEIQMIFQD 110
Cdd:PRK13546 30 PKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV----------------DRNGEVSVIAIS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 111 plASLNPRMSVGDIIAepletfFPELSKQEVKDRVKEMMAKV---GLLPNVINRYPHEFSGGQCQRIGIARALILKPKMI 187
Cdd:PRK13546 94 --AGLSGQLTGIENIE------FKMLCMGFKRKEIKAMTPKIiefSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDIL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 188 ICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESD 251
Cdd:PRK13546 166 VIDEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
38-253 |
6.05e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.59 E-value: 6.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVDVHLYEGETLGVVGESGCG--KSTFARAIIGlveATEGQVMWLGQDLTKMQEVKRRET--RKEIQMIFQDPLA 113
Cdd:NF000106 26 VKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPWRF*TWCANRRALRRTIg*HRPVR*GRRESFS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSVGDIIaepletffpELSKQEVKDRVKEMMAKVGLlPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPV 193
Cdd:NF000106 103 GRENLYMIGR*L---------DLSRKDARARADELLERFSL-TEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPT 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 194 SALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDAL 253
Cdd:NF000106 173 TGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
46-198 |
8.44e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 53.71 E-value: 8.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 46 VHLYEGETLGVVGESGCGKSTFAR-----AIIGL-----VEATEGQVmwLGQDLTKMQEV------KRRETRKEIQMIFQ 109
Cdd:PLN03073 198 VTLAFGRHYGLVGRNGTGKTTFLRymamhAIDGIpkncqILHVEQEV--VGDDTTALQCVlntdieRTQLLEEEAQLVAQ 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 110 D-----PLASLNPRMSV-----GDIIAEPLETFFPELSKQEV---KDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGI 176
Cdd:PLN03073 276 QrelefETETGKGKGANkdgvdKDAVSQRLEEIYKRLELIDAytaEARAASILAGLSFTPEMQVKATKTFSGGWRMRIAL 355
|
170 180
....*....|....*....|..
gi 1633185471 177 ARALILKPKMIICDEPVSALDV 198
Cdd:PLN03073 356 ARALFIEPDLLLLDEPTNHLDL 377
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
37-250 |
1.60e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.42 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 37 NLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQdltkmqEVKRRETRKEIQMIFQdpLASlN 116
Cdd:PRK10982 260 RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGK------KINNHNANEAINHGFA--LVT-E 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 117 PRMSVGdiIAEPLETFFPELSKQevkdrVKEMMAKVGLLPN---------VIN----RYPHE------FSGGQCQRIGIA 177
Cdd:PRK10982 331 ERRSTG--IYAYLDIGFNSLISN-----IRNYKNKVGLLDNsrmksdtqwVIDsmrvKTPGHrtqigsLSGGNQQKVIIG 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1633185471 178 RALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGES 250
Cdd:PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
4-255 |
1.90e-07 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 52.28 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 4 LDKMSKellLDIKDLKVHFSI-AAKSAWP--------WAKPSNLKAVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGL 74
Cdd:PRK10522 296 FNKLNK---LALAPYKAEFPRpQAFPDWQtlelrnvtFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 75 VEATEGQVMWLGQDLTkmqEVKRRETRKEIQMIFQDplASLNPRMSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGL 154
Cdd:PRK10522 373 YQPQSGEILLDGKPVT---AEQPEDYRKLFSAVFTD--FHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISN 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 155 LpnvinryphEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHiSD 234
Cdd:PRK10522 448 L---------KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH-AD 517
|
250 260
....*....|....*....|..
gi 1633185471 235 RVLVMYLGNAVEL-GESDALFS 255
Cdd:PRK10522 518 RLLEMRNGQLSELtGEERDAAS 539
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
40-293 |
2.60e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 52.32 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQD-LTKMQEVKRRetrkeiqmifqdplASLNPR 118
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSiLTNISDVHQN--------------MGYCPQ 2019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 119 MSVGDIIAEPLETFFPELSKQEVKDRVKEMMAKVGL----LPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVS 194
Cdd:TIGR01257 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIqslgLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 195 ALDVSIQAQVVNLLKELQKElGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGESDALFSDPKHPYTKALMSAVPIPDP 274
Cdd:TIGR01257 2100 GMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDL 2178
|
250
....*....|....*....
gi 1633185471 275 RLERNKTIQMLEGDLPSPI 293
Cdd:TIGR01257 2179 LPDLNPVEQFFQGNFPGSV 2197
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
51-254 |
3.32e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 51.71 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEATEG--------QVMWLGQDLTKMQEVK-------RRETRKeiqmiFQDPLASL 115
Cdd:PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGsytfpgnwQLAWVNQETPALPQPAleyvidgDREYRQ-----LEAQLHDA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 116 NPRMSvGDIIAEpLETFFPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:PRK10636 102 NERND-GHAIAT-IHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNH 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 196 LDVSiqaQVVNLLKELQKELGlSLVFIAHD-------LSVVKHISDRVLVMYLGN--------AVELGESDALF 254
Cdd:PRK10636 180 LDLD---AVIWLEKWLKSYQG-TLILISHDrdfldpiVDKIIHIEQQSLFEYTGNyssfevqrATRLAQQQAMY 249
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
50-234 |
4.90e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.05 E-value: 4.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 50 EGETLGVVGESGCGKSTFARAIIGLVEATEGQVM--------WLGQDL----------------TKMQEVKRRETRkeiq 105
Cdd:PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSldpnerlgKLRQDQfafeeftvldtvimghTELWEVKQERDR---- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 106 mIFQDPLASLNPRMSVGDiiaepLETFFPELSKQEVKDRVKEMMAKVGLlpnvinryPHEFSGGQCQ--------RIGIA 177
Cdd:PRK15064 102 -IYALPEMSEEDGMKVAD-----LEVKFAEMDGYTAEARAGELLLGVGI--------PEEQHYGLMSevapgwklRVLLA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633185471 178 RALILKPKMIICDEPVSALDVSiqaqVVNLLKELQKELGLSLVFIAHDL----SVVKHISD 234
Cdd:PRK15064 168 QALFSNPDILLLDEPTNNLDIN----TIRWLEDVLNERNSTMIIISHDRhflnSVCTHMAD 224
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
38-251 |
6.15e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 51.26 E-value: 6.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 38 LKAVDGVdvhLYEGETLGVVGESGCGKSTFARAIIGLVE----ATEGQVMWLGQDLTKMQEVKRREtrkeiqMIFQDPLA 113
Cdd:TIGR00956 77 LKPMDGL---IKPGELTVVLGRPGSGCSTLLKTIASNTDgfhiGVEGVITYDGITPEEIKKHYRGD------VVYNAETD 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSVGDII--AEPLETffPE-----LSKQEVKDRVKEM-MAKVGLL----PNVINRYPHEFSGGQCQRIGIARALI 181
Cdd:TIGR00956 148 VHFPHLTVGETLdfAARCKT--PQnrpdgVSREEYAKHIADVyMATYGLShtrnTKVGNDFVRGVSGGERKRVSIAEASL 225
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 182 LKPKMIICDEPVSALDVSIQAQVVNLLKELQKEL-GLSLVFI------AHDLsvvkhiSDRVLVMYLGNAVELGESD 251
Cdd:TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILdTTPLVAIyqcsqdAYEL------FDKVIVLYEGYQIYFGPAD 296
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
44-110 |
1.53e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 49.80 E-value: 1.53e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWLGQDLTKmqevKRRET-RKEIQMIFQD 110
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTA----DNREAyRQLFSAVFSD 414
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
40-192 |
6.15e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 47.81 E-value: 6.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 40 AVDGVDVHLYEGETLGVVGESGCGKSTF------ARAIiglveaTEGQVMWLGQDLTKMQEvkRRETRKEIQMIFQDPLA 113
Cdd:NF033858 16 ALDDVSLDIPAGCMVGLIGPDGVGKSSLlsliagARKI------QQGRVEVLGGDMADARH--RRAVCPRIAYMPQGLGK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 114 SLNPRMSVgdiiAEPLEtFFPEL---SKQEVKDRVKEMMAKVGLLPnvinrypheF--------SGGQCQRIGIARALIL 182
Cdd:NF033858 88 NLYPTLSV----FENLD-FFGRLfgqDAAERRRRIDELLRATGLAP---------FadrpagklSGGMKQKLGLCCALIH 153
|
170
....*....|
gi 1633185471 183 KPKMIICDEP 192
Cdd:NF033858 154 DPDLLILDEP 163
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
167-266 |
7.29e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 47.81 E-value: 7.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNllKELQKEL-GLSLVFIAHDLSVVKHIsDRVLVMYLGNAV 245
Cdd:PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD--KCIKDELrGKTRVLVTNQLHFLSQV-DRIILVHEGMIK 818
|
90 100
....*....|....*....|.
gi 1633185471 246 ELGESDALFSDpkHPYTKALM 266
Cdd:PLN03130 819 EEGTYEELSNN--GPLFQKLM 837
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
45-225 |
8.34e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 47.24 E-value: 8.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 45 DVHL--YEGETLGVVGESGCGKSTFARAIIGLVEATEGQVM--------WLGQ----DLTK---------MQEVKRRETR 101
Cdd:TIGR03719 23 DISLsfFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARpqpgikvgYLPQepqlDPTKtvrenveegVAEIKDALDR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 102 -KEIQMIFQDPLASLNPRMS----VGDII----AEPLEtffpelSKQEVK-D--RVKEMMAKVGLLpnvinryphefSGG 169
Cdd:TIGR03719 103 fNEISAKYAEPDADFDKLAAeqaeLQEIIdaadAWDLD------SQLEIAmDalRCPPWDADVTKL-----------SGG 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1633185471 170 QCQRIGIARALILKPKMIICDEPVSALDvsiqAQVVNLLKELQKELGLSLVFIAHD 225
Cdd:TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHD 217
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
41-248 |
8.84e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 46.36 E-value: 8.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGlveategqvmwlgqDLTKMQEVKRRETRKEIQmIFQDPLASLN-PRM 119
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG--------------DLTGGGAPRGARVTGDVT-LNGEPLAAIDaPRL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVgdiiaepLETFFPELSKQEVKDRVKEMMakvgllpnVINRYPH---------------------------------EF 166
Cdd:PRK13547 82 AR-------LRAVLPQAAQPAFAFSAREIV--------LLGRYPHarragalthrdgeiawqalalagatalvgrdvtTL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 SGGQCQRIGIARAL---------ILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVL 237
Cdd:PRK13547 147 SGGELARVQFARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226
|
250
....*....|.
gi 1633185471 238 VMYLGNAVELG 248
Cdd:PRK13547 227 MLADGAIVAHG 237
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
33-249 |
1.17e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 45.71 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 33 AKPSNLKavdGVDVHLYEGETLGVVGESGCGKSTFARAIIglveATEGQ-------VMWLGQDLTKMQ--EVKRRETRKE 103
Cdd:cd03270 6 AREHNLK---NVDVDIPRNKLVVITGVSGSGKSSLAFDTI----YAEGQrryveslSAYARQFLGQMDkpDVDSIEGLSP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 104 IQMIFQDpLASLNPRMSVGDI--IAEPLETFFpelSKQEVKDRVKeMMAKVGLLPNVINRYPHEFSGGQCQRIGIARAL- 180
Cdd:cd03270 79 AIAIDQK-TTSRNPRSTVGTVteIYDYLRLLF---ARVGIRERLG-FLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIg 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 181 -ILKPKMIICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGE 249
Cdd:cd03270 154 sGLTGVLYVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRA-ADHVIDIGPGAGVHGGE 221
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
167-254 |
2.49e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 46.12 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 167 SGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVN--LLKELQkelGLSLVFIAHDLSVVKHISDRVLV-----M 239
Cdd:PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDscMKDELK---GKTRVLVTNQLHFLPLMDRIILVsegmiK 818
|
90
....*....|....*
gi 1633185471 240 YLGNAVELGESDALF 254
Cdd:PLN03232 819 EEGTFAELSKSGSLF 833
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
44-257 |
2.79e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 45.93 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 44 VDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVmWlgqdltkmqevkrreTRKEIQMIFQDPLAsLNPRMSvGD 123
Cdd:PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-W---------------AERSIAYVPQQAWI-MNATVR-GN 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 124 IIaepletFFPELSKQEVKD--RVKEMMAKVGLLPNVINRYPHE----FSGGQCQRIGIARALILKPKMIICDEPVSALD 197
Cdd:PTZ00243 741 IL------FFDEEDAARLADavRVSQLEADLAQLGGGLETEIGEkgvnLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633185471 198 VSIQAQVVN--LLKELQkelGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGESDALFSDP 257
Cdd:PTZ00243 815 AHVGERVVEecFLGALA---GKTRVLATHQVHVVPR-ADYVVALGDGRVEFSGSSADFMRTS 872
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
42-237 |
6.69e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.50 E-value: 6.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 42 DGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGQVMWlgqdltkmqevkrrETRKEIQMIFQDPLASLNPRMSV 121
Cdd:PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW--------------SENANIGYYAQDHAYDFENDLTL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 122 GDIIAEpletffpelSKQEVKDR--VKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDV- 198
Cdd:PRK15064 402 FDWMSQ---------WRQEGDDEqaVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMe 472
|
170 180 190
....*....|....*....|....*....|....*....
gi 1633185471 199 SIQAqvVNLlkELQKELGlSLVFIAHDLSVVKHISDRVL 237
Cdd:PRK15064 473 SIES--LNM--ALEKYEG-TLIFVSHDREFVSSLATRII 506
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
120-237 |
1.81e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.28 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDII---AEPLETFFpeLSKQEVKDRVkEMMAKVGL--LPnvINRYPHEFSGGQCQRIGIARALIL---KPKMIICDE 191
Cdd:PRK00635 764 NIADILemtAYEAEKFF--LDEPSIHEKI-HALCSLGLdyLP--LGRPLSSLSGGEIQRLKLAYELLApskKPTLYVLDE 838
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1633185471 192 PVSALDVSIQAQVVNLLKELQkELGLSLVFIAHDLSVVKhISDRVL 237
Cdd:PRK00635 839 PTTGLHTHDIKALIYVLQSLT-HQGHTVVIIEHNMHVVK-VADYVL 882
|
|
| PRK07429 |
PRK07429 |
phosphoribulokinase; Provisional |
54-131 |
3.11e-04 |
|
phosphoribulokinase; Provisional
Pssm-ID: 180975 Cd Length: 327 Bit Score: 41.92 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 54 LGVVGESGCGKSTFARAIIGLveategqvmwLGQDLTK---MQEVKR--RETRKEIqmifqdPLASLNPRMSVGDIIAEP 128
Cdd:PRK07429 11 LGVAGDSGCGKTTFLRGLADL----------LGEELVTvicTDDYHSydRKQRKEL------GITALDPRANNLDIMYEH 74
|
...
gi 1633185471 129 LET 131
Cdd:PRK07429 75 LKA 77
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
41-225 |
3.31e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 42.23 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 41 VDGVDVHLYEGETLGVVGESGCGKSTFARAIIGLVEATEGqvmwlgqdltkmqEVKRRETrkeIQMIFQDPL-ASLNPRM 119
Cdd:TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-------------TIEIGET---VKLAYVDQSrDALDPNK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 120 SVGDIIAEPLETFfpELSKQEVKDRV---------KEMMAKVGLLpnvinryphefSGGQCQRIGIARALILKPKMIICD 190
Cdd:TIGR03719 402 TVWEEISGGLDII--KLGKREIPSRAyvgrfnfkgSDQQKKVGQL-----------SGGERNRVHLAKTLKSGGNVLLLD 468
|
170 180 190
....*....|....*....|....*....|....*.
gi 1633185471 191 EPVSALDV-SIQAqvvnlLKELQKELGLSLVFIAHD 225
Cdd:TIGR03719 469 EPTNDLDVeTLRA-----LEEALLNFAGCAVVISHD 499
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
51-201 |
5.45e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 41.82 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVeATEGQVMWlgqDLTKMQEVKRRETRKEIQMIFQDPLA-SLNPRMSVgdiiaEPL 129
Cdd:TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLL-STEGEIQI---DGVSWNSVTLQTWRKAFGVIPQKVFIfSGTFRKNL-----DPY 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 130 ETFfpelSKQEVKdRVKEmmaKVGLlPNVINRYPHEF-----------SGGQCQRIGIARALILKPKMIICDEPVSALD- 197
Cdd:TIGR01271 1316 EQW----SDEEIW-KVAE---EVGL-KSVIEQFPDKLdfvlvdggyvlSNGHKQLMCLARSILSKAKILLLDEPSAHLDp 1386
|
....
gi 1633185471 198 VSIQ 201
Cdd:TIGR01271 1387 VTLQ 1390
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
167-230 |
5.97e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 40.68 E-value: 5.97e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633185471 167 SGGQCQRIGIARALILK---PKMIICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVK 230
Cdd:cd03271 171 SGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHFHDVKKLLEVLQRL-VDKGNTVVVIEHNLDVIK 236
|
|
| PRK |
cd02026 |
Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or ... |
54-113 |
1.79e-03 |
|
Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Pssm-ID: 238984 [Multi-domain] Cd Length: 273 Bit Score: 39.63 E-value: 1.79e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1633185471 54 LGVVGESGCGKSTFARAIIGLveategqvmwLGQDLTK---MQEVKR--RETRKEIQMIFQDPLA 113
Cdd:cd02026 2 IGVAGDSGCGKSTFLRRLTSL----------FGSDLVTvicLDDYHSldRKGRKETGITALDPRA 56
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
118-287 |
2.07e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.00 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 118 RMSVGDIIAepletFFPELSKQEVKDRV-----KEMMAKVGLLPNV------INRYPHEFSGGQCQRIGIARAL--ILKP 184
Cdd:TIGR00630 435 ELSIREAHE-----FFNQLTLTPEEKKIaeevlKEIRERLGFLIDVgldylsLSRAAGTLSGGEAQRIRLATQIgsGLTG 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 185 KMIICDEPVSALDVSIQAQVVNLLKELQKeLGLSLVFIAHDLSVVKHiSDRVLVMYLGNAVELGEsdALFSDP------- 257
Cdd:TIGR00630 510 VLYVLDEPSIGLHQRDNRRLINTLKRLRD-LGNTLIVVEHDEDTIRA-ADYVIDIGPGAGEHGGE--VVASGTpeeilan 585
|
170 180 190
....*....|....*....|....*....|...
gi 1633185471 258 KHPYTKALMSA---VPIPDPRLERNKTIQMLEG 287
Cdd:TIGR00630 586 PDSLTGQYLSGrkkIEVPAERRPGNGKFLTLKG 618
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
167-234 |
2.20e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.00 E-value: 2.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 167 SGGQCQRIGIARALILK---PKMIICDEPVSALDVSIQAQVVNLLKELqKELGLSLVFIAHDLSVVK---HISD 234
Cdd:TIGR00630 831 SGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRL-VDKGNTVVVIEHNLDVIKtadYIID 903
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
139-197 |
6.51e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 38.07 E-value: 6.51e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1633185471 139 QEVKDR----VKEMMAKVGLLPNVINRYPHEFSGGQcQRIG-IARALILKPKMIICDEPVSALD 197
Cdd:PRK10938 371 QAVSDRqqklAQQWLDILGIDKRTADAPFHSLSWGQ-QRLAlIVRALVKHPTLLILDEPLQGLD 433
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
51-201 |
7.44e-03 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 37.53 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 51 GETLGVVGESGCGKSTFARAIIGLVEaTEGQVMWLGQDLTKMQEVKRRETRKEIQ---MIFQDPL-ASLNPrmsvgdiia 126
Cdd:cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPqkvFIFSGTFrKNLDP--------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633185471 127 epletfFPELSKQEVKdRVKEmmaKVGLlPNVINRYPHEF-----------SGGQCQRIGIARALILKPKMIICDEPVSA 195
Cdd:cd03289 100 ------YGKWSDEEIW-KVAE---EVGL-KSVIEQFPGQLdfvlvdggcvlSHGHKQLMCLARSVLSKAKILLLDEPSAH 168
|
....*..
gi 1633185471 196 LD-VSIQ 201
Cdd:cd03289 169 LDpITYQ 175
|
|
| |
