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Conserved domains on  [gi|1661072235|gb|TLP21634|]
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hypothetical protein FEG35_05270 [Acinetobacter baumannii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC_trans_aux super family cl46247
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 1-40 5.83e-03

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


The actual alignment was detected with superfamily member COG3218:

Pssm-ID: 480587  Cd Length: 202  Bit Score: 33.05  E-value: 5.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1661072235   1 MKRLLLVLATGFGLDGCASLTQKADENYITKSPVTPVNTA 40
Cdd:COG3218     6 LLRLLLLLLLALLLAGCSSLPAPPPPTLYDLTPPLPAAAA 45
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-40 5.83e-03

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 33.05  E-value: 5.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1661072235   1 MKRLLLVLATGFGLDGCASLTQKADENYITKSPVTPVNTA 40
Cdd:COG3218     6 LLRLLLLLLLALLLAGCSSLPAPPPPTLYDLTPPLPAAAA 45
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-40 5.83e-03

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 33.05  E-value: 5.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1661072235   1 MKRLLLVLATGFGLDGCASLTQKADENYITKSPVTPVNTA 40
Cdd:COG3218     6 LLRLLLLLLLALLLAGCSSLPAPPPPTLYDLTPPLPAAAA 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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