|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
138-403 |
1.52e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.51 E-value: 1.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 138 FGLAELYSSKGEEQKAITYYESLLAEHKvmGGVVIALRLGETLSAIGNWEEAISYYEAGLEEQKD-IHSLFGYAFTLYQG 216
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDP--ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 217 EEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQK 296
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 297 ALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNhPDFL 376
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLL 248
|
250 260
....*....|....*....|....*..
gi 1684960174 377 EEYGYFLLEEGMRKEAKEVFTQLIQLD 403
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
27-301 |
9.03e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.80 E-value: 9.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 27 LKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLV 106
Cdd:COG2956 3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 107 ADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKvmGGVVIALRLGETLSAIGNW 186
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCELAELYLEQGDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 187 EEAISYYEAGLEEQKD-IHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIK 265
Cdd:COG2956 161 DEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
|
250 260 270
....*....|....*....|....*....|....*.
gi 1684960174 266 VDElSVPFYVELANIAAKLGKIAEAEEVLQKALELD 301
Cdd:COG2956 241 LDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
217-416 |
3.83e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 98.26 E-value: 3.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 217 EEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQK 296
Cdd:COG2956 22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 297 ALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHPDFL 376
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1684960174 377 EEYGYFLLEEGMRKEAKEVFTQLIQLDPTQIHIEELLYNL 416
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
181-383 |
1.22e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.04 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 181 SAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYE-------KEGML 253
Cdd:COG3914 15 AALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLElaalllqALGRY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 254 QESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAID 333
Cdd:COG3914 95 EEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1684960174 334 SGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYtsfKNHPDFLEEYGYFL 383
Cdd:COG3914 175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL---ELDPDNADAHSNLL 221
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
176-394 |
7.63e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.67 E-value: 7.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 176 LGETLSAIGNWEEAISYYEAGLEEQKD-IHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQ 254
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 255 ESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDS 334
Cdd:COG0457 94 EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 335 GEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKE 394
Cdd:COG0457 174 ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
213-409 |
2.43e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 81.19 E-value: 2.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 213 LYQGEEYQRAIGAWQELKELDSEYASLYMYLAKS--YEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEA 290
Cdd:COG3914 18 LAAAAAAELALAAELEAAALAAALGLALLLLAALaeAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 291 EEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFK 370
Cdd:COG3914 98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
|
170 180 190
....*....|....*....|....*....|....*....
gi 1684960174 371 NHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDPTQIHI 409
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
231-417 |
3.31e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.74 E-value: 3.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 231 ELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLK 310
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 311 YAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRK 390
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180
....*....|....*....|....*..
gi 1684960174 391 EAKEVFTQLIQLDPTQIHIEELLYNLE 417
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAAL 188
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
201-418 |
8.70e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.58 E-value: 8.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 201 KDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANI 280
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 281 AAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALK 360
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 361 HYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDPTQIHIEELLYNLED 418
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELL 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
174-333 |
1.91e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.50 E-value: 1.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 174 LRLGETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGML 253
Cdd:COG3914 49 AALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 254 QESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAID 333
Cdd:COG3914 129 EEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
206-332 |
7.84e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.99 E-value: 7.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 206 LFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLG 285
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1684960174 286 KIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAI 332
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
128-353 |
8.82e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.50 E-value: 8.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 128 EMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKvmgGVVIAL-RLGETLSAIGNWEEAISYYEAGLEEQ-KDIHS 205
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---DDAEALyNLGLAYLRLGRYEEALADYEQALELDpDDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 206 LFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLG 285
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 286 KIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLE 353
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
274-406 |
2.01e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.14 E-value: 2.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 274 YVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLE 353
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1684960174 354 MYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDPTQ 406
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
240-404 |
3.69e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.37 E-value: 3.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 240 YMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQE 319
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 320 KYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQL 399
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
....*
gi 1684960174 400 IQLDP 404
Cdd:COG2956 171 LKLDP 175
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
264-404 |
7.46e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.11 E-value: 7.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 264 IKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLW 343
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1684960174 344 DLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDP 404
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
237-365 |
1.20e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 237 ASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILK 316
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1684960174 317 EQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESA 365
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
99-333 |
5.58e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.41 E-value: 5.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 99 YVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKvmGGVVIALRLGE 178
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 179 TLSAIGNWEEAISYYEAGLE-EQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESY 257
Cdd:COG0457 85 ALQALGRYEEALEDYDKALElDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1684960174 258 ETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAID 333
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
174-304 |
7.20e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 7.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 174 LRLGETLSAIGNWEEAISYYEAGLEEQ-KDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGM 252
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1684960174 253 LQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGH 304
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
10-404 |
1.30e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 66.65 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 10 YIENGEAEKGLQLLKEQLKIANDEEK--YDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIE 87
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPaaANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 88 VLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKVM 167
Cdd:TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 168 GgvVIALRLGETLSAIGNWEEAISYYEAGLEEQKD-IHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKS 246
Cdd:TIGR02917 635 A--LALLLLADAYAVMKNYAKAITSLKRALELKPDnTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 247 YEKEGMLQESYETLHEGIKVDELSVPFyVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIA 326
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 327 VVERAIDSGEPDTQLLWDLAFAKKQLEMySDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDP 404
Cdd:TIGR02917 792 HYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
221-340 |
1.36e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 221 RAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALEL 300
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1684960174 301 DPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQ 340
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
4-407 |
1.57e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 66.26 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 4 FEQAVSYIENGEAEKGLQLLKEQLKIANDEEKydiARYYHTL-----GFTDEALAITEDLRLLYPEESEFTVFLAELYID 78
Cdd:TIGR02917 231 LALATILIEAGEFEEAEKHADALLKKAPNSPL---AHYLKALvdfqkKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 79 LDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYE 158
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 159 SllAEHKVMGGVVIALRLGETLSAIGNWEEAISYYEAGLE-EQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYA 237
Cdd:TIGR02917 388 K--ATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQlDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 238 SLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKE 317
Cdd:TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 318 QEKYEELIAVVERAIDSGEPDTQLLWDLA---FAKKQLEMysdALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKE 394
Cdd:TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAqyyLGKGQLKK---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622
|
410
....*....|...
gi 1684960174 395 VFTQLIQLDPTQI 407
Cdd:TIGR02917 623 SFKKLLALQPDSA 635
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
30-164 |
2.68e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 2.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 30 ANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADL 109
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1684960174 110 FQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEH 164
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-413 |
1.70e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 5 EQAVSYIENGEAEKGLQLLKEQLKIAND--EEKYDIARYYHTLGftDEALAITEDLRL--LYPEESEFTVFLAELYIDLD 80
Cdd:TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKDPNdaEARFLLGKIYLALG--DYAAAEKELRKAlsLGYPKNQVLPLLARAYLLQG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 81 KEDEAIEVLHDIPENDD-LYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYES 159
Cdd:TIGR02917 105 KFQQVLDELPGKTLLDDeGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 160 LLAEHKvmgGVVIALRL-GETLSAIGNWEEAISYYEAGLEEQK-DIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYA 237
Cdd:TIGR02917 185 VLTADP---GNVDALLLkGDLLLSLGNIELALAAYRKAIALRPnNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 238 SLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKE 317
Cdd:TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 318 QEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFT 397
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421
|
410
....*....|....*.
gi 1684960174 398 QLIQLDPTQIHIEELL 413
Cdd:TIGR02917 422 TAAQLDPELGRADLLL 437
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
2-133 |
1.76e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 2 QKFEQAVSYIENGEAEKGLQLLKEQLKIANDEEK--YDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDL 79
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEafALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1684960174 80 DKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDE 133
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
174-299 |
2.07e-09 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 57.58 E-value: 2.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 174 LRLGETLSAIGNWEEAISYYEAGLE--EQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYAS--LYMYLAKSYEK 249
Cdd:COG4700 93 VRLADALLELGRYDEAIELYEEALTgiFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALEA 172
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1684960174 250 egmLQESYETLHEGIKVDELSvPFY---VELANIAAKLGKIAEAEEVLQKALE 299
Cdd:COG4700 173 ---LGDLEAAEAELEALARRY-SGPearYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
274-365 |
2.49e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.01 E-value: 2.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 274 YVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLE 353
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90
....*....|..
gi 1684960174 354 MYSDALKHYESA 365
Cdd:COG4235 100 DYAEAIAAWQKL 111
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
72-202 |
3.78e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 72 LAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQ 151
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1684960174 152 KAITYYESLLAEHKVMGGvvIALRLGETLSAIGNWEEAISYYEAGLEEQKD 202
Cdd:COG4783 90 EALALLEKALKLDPEHPE--AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-223 |
4.83e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.47 E-value: 4.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 18 KGLQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDD 97
Cdd:COG3914 64 AGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 98 LYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLA----EHKVMGGVVIA 173
Cdd:COG3914 144 DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEldpdNADAHSNLLFA 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1684960174 174 LRlgetlsAIGNWEEAiSYYEAGLEEQKDIHSLFGYAFTLYQGE---EYQRAI 223
Cdd:COG3914 224 LR------QACDWEVY-DRFEELLAALARGPSELSPFALLYLPDddpAELLAL 269
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
188-302 |
1.95e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 188 EAISYYEAGLEEQ-KDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKV 266
Cdd:COG4235 1 EAIARLRQALAANpNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1684960174 267 DELSVPFYVELANIAAKLGKIAEAEEVLQKALELDP 302
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
289-404 |
3.83e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 289 EAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTS 368
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1684960174 369 FKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDP 404
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
26-258 |
8.88e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.70 E-value: 8.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 26 QLKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLL 105
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 106 VADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKvmGGVVIALRLGETLSAIGN 185
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP--DDADALYNLGIALEKLGR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1684960174 186 WEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYE 258
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
280-365 |
3.05e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 280 IAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAvVERAIDSGEPDTQLLWDLAFAKKQLEMYSDAL 359
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*.
gi 1684960174 360 KHYESA 365
Cdd:COG3063 80 AYLERA 85
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
7-232 |
6.85e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 6.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 7 AVSYIENGEAEKGLQLLKEQLKIANDEEK--YDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDE 84
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEalYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 85 AIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEH 164
Cdd:COG0457 95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 165 KVMGGVVIALRLGETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKEL 232
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
188-334 |
1.05e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 188 EAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVD 267
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1684960174 268 ELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDS 334
Cdd:COG5010 85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
119-241 |
2.39e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 119 AEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKvmGGVVIALRLGETLSAIGNWEEAISYYEAGLE 198
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1684960174 199 EQ-KDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYM 241
Cdd:COG4235 80 LDpDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
274-401 |
2.47e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 48.34 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 274 YVELANIAAKLGKIAEAEEVLQKALE-LDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGE----PDTQLLWDLAFA 348
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfksSDAHLLYARALE 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1684960174 349 kkQLEMYSDALKHYESAYTSFkNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQ 401
Cdd:COG4700 172 --ALGDLEAAEAELEALARRY-SGPEARYRYAKFLARQGRTAEAKELLEEILD 221
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
213-302 |
2.71e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 213 LYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYEtLHEGIKVDELSVPFYVELANIAAKLGKIAEAEE 292
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1684960174 293 VLQKALELDP 302
Cdd:COG3063 81 YLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
274-404 |
2.91e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 274 YVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLE 353
Cdd:COG5010 23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1684960174 354 MYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDP 404
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
247-333 |
3.20e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.16 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 247 YEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEvLQKALELDPGHLGATLKYAYILKEQEKYEELIA 326
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*..
gi 1684960174 327 VVERAID 333
Cdd:COG3063 81 YLERALE 87
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
72-404 |
5.22e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 72 LAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQ 151
Cdd:TIGR02917 165 LAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 152 KAITYYESLLAEhkvmggvVIALRLGETLSAI-----GNWEEAISYYEAGLEEQKD-IHSLFGYAFTLYQGEEYQRAIGA 225
Cdd:TIGR02917 245 EAEKHADALLKK-------APNSPLAHYLKALvdfqkKNYEDARETLQDALKSAPEyLPALLLAGASEYQLGNLEQAYQY 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 226 W-QELKELDSEYASLYMyLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGH 304
Cdd:TIGR02917 318 LnQILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 305 LGATLKYAYILKEQEKYEELIAVVERAI--DSGEPDTQLLwdLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYF 382
Cdd:TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAqlDPELGRADLL--LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
|
330 340
....*....|....*....|..
gi 1684960174 383 LLEEGMRKEAKEVFTQLIQLDP 404
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEP 496
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
156-302 |
6.11e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 156 YYESLLAEHKVMGGVVIALRLGETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSE 235
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1684960174 236 YASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDP 302
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
174-282 |
1.22e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 174 LRLGETLSAIGNWEEAISYYEAGLE-EQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGM 252
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRlDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100
|
90 100 110
....*....|....*....|....*....|
gi 1684960174 253 LQESYETLHEGIKVDELSVPFYVELANIAA 282
Cdd:COG4235 101 YAEAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
218-365 |
1.57e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 218 EYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKA 297
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 298 LELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESA 365
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
173-309 |
2.71e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 45.29 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 173 ALRLGETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGM 252
Cdd:COG4785 43 DLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1684960174 253 LQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATL 309
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
10-357 |
3.96e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 45.75 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 10 YIENGEAEKGLQLLKEQLKIANDEEKYDIaryyhtlGFTDEALAITEDLRL--LYPEESEFTVFLAELYIDLDKEDEAIE 87
Cdd:TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADE-------SYEEAARAFEKALDLgkLGEKEAIALNLRGTFKCLKGKHLEALA 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 88 VLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGE-------EQKAITYYESL 160
Cdd:TIGR00990 353 DLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEfaqagkdYQKSIDLDPDF 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 161 LAEHKVMGgvVIALRLGETLSAIGNWEEAISYYEagleEQKDIHSLFGYafTLYQGEEYQRAIGAWQELKELDSEYASLY 240
Cdd:TIGR00990 433 IFSHIQLG--VTQYKEGSIASSMATFRRCKKNFP----EAPDVYNYYGE--LLLDQNKFDEAIEKFDTAIELEKETKPMY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 241 MYLAKSYEKEGMLQESYETLhegikvdelsvpfyvelaniaaklgkiAEAEEVLQKALELDPGHLGATLKYAYILKEQEK 320
Cdd:TIGR00990 505 MNVLPLINKALALFQWKQDF---------------------------IEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1684960174 321 YEELIAVVERAIDSGEPDTQLLWDLAFA---KKQLEMYSD 357
Cdd:TIGR00990 558 VDEALKLFERAAELARTEGELVQAISYAeatRTQIQVQED 597
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
63-162 |
6.13e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 63 PEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAE 142
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|
gi 1684960174 143 LYSSKGEEQKAITYYESLLA 162
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLA 113
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
7-298 |
1.28e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 7 AVSYIENGEAEKGLQLLKEQLKIAND--EEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDE 84
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDsaLALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 85 AIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITfGLAELYSSKGEEQKAITYYESLLAEH 164
Cdd:TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 165 KvmGGVVIALRLGETLSAIGNWEEAISYYEAGLE-EQKDIHSLFGYAFtLYQGEEYQRAIGAWQELKELDSEYASLYMYL 243
Cdd:TIGR02917 767 P--NDAVLRTALAELYLAQKDYDKAIKHYQTVVKkAPDNAVVLNNLAW-LYLELKDPRALEYAERALKLAPNIPAILDTL 843
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1684960174 244 AKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKAL 298
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
323-416 |
1.87e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 323 ELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQL 402
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....
gi 1684960174 403 DPTQIhieELLYNL 416
Cdd:COG4235 81 DPDNP---EALYLL 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
235-401 |
2.89e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.82 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 235 EYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYI 314
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 315 LKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEmysdalkhYESAYTSFKnhpdflEEYGYFLLEEGMRKEAKE 394
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLL------EDWATAYLLQGDTEEARE 216
|
....*..
gi 1684960174 395 VFTQLIQ 401
Cdd:COG4785 217 LFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
51-198 |
8.71e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 8.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 51 ALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMM 130
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 131 PDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKvmGGVVIALRLGETLSAIGNWEEAISYYEAGLE 198
Cdd:COG5010 85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
72-303 |
8.88e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.05 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 72 LAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQG-FDDVAE--QKLLKAKEMMPDE--PVITFGLAELYSS 146
Cdd:COG3071 91 RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGdWEELLEllPALRKHKALSAEEaqALERRAYLGLLRQ 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 147 KGEEQKAI-TYYESLLAEHKVMggVVIALRLGETLSAIGNWEEAISYYEAGLEEQKDihSLFGYAFTLYQGEEYQRAIGA 225
Cdd:COG3071 171 AARDAEALkALWKALPRAERRD--PELAAAYARALIALGDHDEAERLLREALKRQWD--PRLVRLYGRLQGGDPAKQLKR 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1684960174 226 WQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDElSVPFYVELANIAAKLGKIAEAEEVLQKALELDPG 303
Cdd:COG3071 247 AEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
217-392 |
1.57e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 40.03 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 217 EEYQRAIGAWQELKELDSEYASLYMYL-AKSYEKEGMLQESYETLHEGikvdELSVPFYVELANIAAKLGKIAEAEEVLQ 295
Cdd:pfam13429 94 DAARLSELGWRRFRSPRHLYSALYLYErAGDYDRLARLLASLEELPAA----EQSPAFWLARAEYYRQTGEPDAALRDYR 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 296 KALELDPGhlGATLKYAYI--LKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYTSFKNHP 373
Cdd:pfam13429 170 RALALAPA--STELRAALLwfLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRPRKALPYLRKQAASNRNDP 247
|
170
....*....|....*....
gi 1684960174 374 DFLEEYGYFLLEEGMRKEA 392
Cdd:pfam13429 248 LWLLAYADALEQAGRADAA 266
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
285-345 |
1.65e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 1.65e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1684960174 285 GKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSgEPDTQLLWDL 345
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAA-DPDDPRYAAL 61
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
273-406 |
2.31e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 39.24 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 273 FYVELANIAAKLGKIAEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLL----WDLaFA 348
Cdd:TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLnnygTFL-CQ 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 349 KKQlemYSDALKHYESAYTS--FKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDPTQ 406
Cdd:TIGR02521 112 QGK---YEQAMQQFEQAIEDplYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
216-403 |
2.56e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.97 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 216 GEEYQRAIGAWQELKELDSeyasLYMYLAKSYEKEGMLQ-------ESYETLHEGIKVDELSVPFYVELANIAAKLGKIA 288
Cdd:TIGR00990 307 DESYEEAARAFEKALDLGK----LGEKEAIALNLRGTFKclkgkhlEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 289 EAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSgEPDTQLLW-DLAFAKKQLEMYSDALKHYESAYT 367
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPDFIFSHiQLGVTQYKEGSIASSMATFRRCKK 461
|
170 180 190
....*....|....*....|....*....|....*.
gi 1684960174 368 SFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLD 403
Cdd:TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
345-404 |
2.57e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.53 E-value: 2.57e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1684960174 345 LAFAKKQLEM--YSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDP 404
Cdd:cd24142 4 LEKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
276-377 |
3.04e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 38.68 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 276 ELANIAAKLGKIAEAEEVLQKALE--LDPGHLG-ATLKYAYILKEQEKYEELIAVVERAIDSG-EPDTQ-LLWDLAFAKK 350
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLDnaKDPALKAlARLRLARVLLAQKKYDEALATLDAVKPEAfAALYAeLRGDILLAQG 174
|
90 100
....*....|....*....|....*..
gi 1684960174 351 QLEmysDALKHYESAYTSFKNHPDFLE 377
Cdd:COG2976 175 DKA---EARAAYQKALAALPEDAPLRQ 198
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
288-413 |
3.15e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 288 AEAEEVLQKALELDPGHLGATLKYAYILKEQEKYEELIAVVERAIDSGEPDTQLLWDLAFAKKQLEMYSDALKHYESAYT 367
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1684960174 368 SFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDPTQIHIEELL 413
Cdd:COG5010 83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL 128
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
213-418 |
3.79e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.12 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 213 LYQGEEYQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAA--KLGKIAEA 290
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYlgLLRQAARD 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 291 EEVLQKALELDPGHL----GATLKYAYILKEQEKYEELIAVVERAIDSgEPDTQLLwdLAFAKKQLEMYSDALKHYESAY 366
Cdd:COG3071 175 AEALKALWKALPRAErrdpELAAAYARALIALGDHDEAERLLREALKR-QWDPRLV--RLYGRLQGGDPAKQLKRAEKWL 251
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1684960174 367 TSFKNHPDFLEEYGYFLLEEGMRKEAKEVFTQLIQLDPT-QIHIE--ELLYNLED 418
Cdd:COG3071 252 KKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSaEAYAElaRLLEQLGD 306
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
48-104 |
4.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 4.29e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1684960174 48 TDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPEN--DDLYVQSLL 104
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAAdpDDPRYAALL 62
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
20-166 |
5.15e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.63 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 20 LQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLY 99
Cdd:COG5010 8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1684960174 100 VQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKV 166
Cdd:COG5010 88 PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
211-314 |
7.78e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 7.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 211 FTLYQGEEYQRAIGAWQELKEL--DSEYASL-YMYLAKSYEKEGMLQESYETLHEGIKV---DELSVPFYVELANIAAKL 284
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRypNSPLAPDaLYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|
gi 1684960174 285 GKIAEAEEVLQKALELDPGHLGATLKYAYI 314
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
274-304 |
7.83e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 33.93 E-value: 7.83e-03
10 20 30
....*....|....*....|....*....|.
gi 1684960174 274 YVELANIAAKLGKIAEAEEVLQKALELDPGH 304
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
274-304 |
8.01e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 33.96 E-value: 8.01e-03
10 20 30
....*....|....*....|....*....|.
gi 1684960174 274 YVELANIAAKLGKIAEAEEVLQKALELDPGH 304
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
140-270 |
8.97e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 36.86 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 140 LAELYSSKGEEQKAITYYESLLAEHKVMGGVVIALRLGETLSAIGNWEEAISYYEAGLEEQ-KDIHSLFGYAFTLYQGEE 218
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDpNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1684960174 219 YQRAIGAWQELKELDSEYASLYMYLAKSYEKEGMLQESYETLHEGIKVDELS 270
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
75-162 |
9.49e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.53 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 75 LYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQkLLKAKEMMPDEPVITFGLAELYSSKGEEQKAI 154
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*...
gi 1684960174 155 TYYESLLA 162
Cdd:COG3063 80 AYLERALE 87
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
109-204 |
9.96e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.15 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1684960174 109 LFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKVmggVVIALRLGETLSAIGNWEE 188
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNN---AEALLNLAELLLELGDYDE 77
|
90
....*....|....*.
gi 1684960174 189 AISYYEAGLEEQKDIH 204
Cdd:COG3063 78 ALAYLERALELDPSAL 93
|
|
| |
