|
Name |
Accession |
Description |
Interval |
E-value |
| YdeE |
COG3708 |
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ... |
129-282 |
7.38e-44 |
|
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];
Pssm-ID: 442922 Cd Length: 157 Bit Score: 146.32 E-value: 7.38e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 129 MNYRIEKKEAFRIVGVSQPLHNELEKNFEIVPQMWQKVALDGTLqKLIPMMDSQlqGVLGISICNNSE--EWKYFISVSS 206
Cdd:COG3708 1 MEYRIVEKPAFKLVGLSARTSNSDEEANEEIPALWQRFLPEGLA-EIPNLSNPG--GLYGVCTDYESDegEFDYLAGVEV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 207 TKS--IDNTLEEYTVPAFTWAIFSGEGQCPQAIQELEKRIVTEWLPTSGYEYDNGPDIELYLNPD--PQNAKFEVWIPVV 282
Cdd:COG3708 78 SSFdeVPEGLETLEIPAGTYAVFTHKGPMPEALQETWQYIYSEWLPSSGYERADGPDFEVYDERDdpSPDSEVEIWIPIK 157
|
|
| AraC_E_bind |
smart00871 |
Bacterial transcription activator, effector binding domain; This domain is found in the ... |
130-282 |
2.82e-26 |
|
Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Pssm-ID: 214874 [Multi-domain] Cd Length: 158 Bit Score: 101.01 E-value: 2.82e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 130 NYRIEKKEAFRIVGVSQPLHNELEKnfeiVPQMWQKVALDGTLQKLIPMMDSQLQ-GVLGISIC-NNSEEWKYFI--SVS 205
Cdd:smart00871 1 EVRIVELPAFKVAGLRHRGPNEDEK----IPELWQRLIQWAKELGLLPVGNSGEPyGVYYDDPDdTPDGEFRYDAgvEVS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 206 STKSIDNTLEEYTVPAFTWAIFSGEGQCPQAIQELEKRIVTEWLPTSGYEYDN-GPDIELYLN----PDPQNAKFEVWIP 280
Cdd:smart00871 77 DEVEAPEGVETKTIPAGKYAVFTHKGGSYDEIQEAWEAIYGEWLPNSGYELRDaGPDFEVYLNdppdTDPEELVTEIYIP 156
|
..
gi 1689816792 281 VV 282
Cdd:smart00871 157 VK 158
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
25-101 |
5.40e-25 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 95.31 E-value: 5.40e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1689816792 25 EQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAPS 101
Cdd:smart00342 5 EDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
25-106 |
4.72e-23 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 95.23 E-value: 4.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 25 EQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAPSVIK 104
Cdd:COG2207 172 EELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
|
..
gi 1689816792 105 KR 106
Cdd:COG2207 252 KR 253
|
|
| Cass2 |
pfam14526 |
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, ... |
132-281 |
2.21e-21 |
|
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.
Pssm-ID: 434016 [Multi-domain] Cd Length: 149 Bit Score: 87.80 E-value: 2.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 132 RIEKKEAFRIVGVSQPLHNELEKNFEIVPQMWQKVALDGTLQKLIPMMDsqlqgVLGISiCNNSEEWKYF-----ISVSS 206
Cdd:pfam14526 1 EIVELPSFTVAGIRYEGPNEYEDHNKEIGKFWEEFNEDGRLPNIKKDDK-----SYGIY-VDYEDEENEFdyyagVEVPS 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1689816792 207 TKSIDNTLEEYTVPAFTWAIFSGEGQCPQAIQELEKRIVTEWLPTSGYEYDNGPDIELYLNPDPQNAKFEVWIPV 281
Cdd:pfam14526 75 FSELPEGLVVIEIPGGKYAVFTIEGDFPDAIAEAWTRIYGWLLPNSGYERAGGPDFEVYKENGDENMKIELYIPV 149
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
5-101 |
5.63e-19 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 79.97 E-value: 5.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 5 ERLNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSS 84
Cdd:PRK10219 5 KIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVS 84
|
90
....*....|....*..
gi 1689816792 85 PTAFNRAFKSIHGVAPS 101
Cdd:PRK10219 85 QQTFSRVFRRQFDRTPS 101
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
27-106 |
2.52e-18 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 77.63 E-value: 2.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 27 VAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVEL-QNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAPSVIKK 105
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 1689816792 106 R 106
Cdd:pfam12833 81 R 81
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YdeE |
COG3708 |
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription] ... |
129-282 |
7.38e-44 |
|
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain [Transcription];
Pssm-ID: 442922 Cd Length: 157 Bit Score: 146.32 E-value: 7.38e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 129 MNYRIEKKEAFRIVGVSQPLHNELEKNFEIVPQMWQKVALDGTLqKLIPMMDSQlqGVLGISICNNSE--EWKYFISVSS 206
Cdd:COG3708 1 MEYRIVEKPAFKLVGLSARTSNSDEEANEEIPALWQRFLPEGLA-EIPNLSNPG--GLYGVCTDYESDegEFDYLAGVEV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 207 TKS--IDNTLEEYTVPAFTWAIFSGEGQCPQAIQELEKRIVTEWLPTSGYEYDNGPDIELYLNPD--PQNAKFEVWIPVV 282
Cdd:COG3708 78 SSFdeVPEGLETLEIPAGTYAVFTHKGPMPEALQETWQYIYSEWLPSSGYERADGPDFEVYDERDdpSPDSEVEIWIPIK 157
|
|
| AraC_E_bind |
smart00871 |
Bacterial transcription activator, effector binding domain; This domain is found in the ... |
130-282 |
2.82e-26 |
|
Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Pssm-ID: 214874 [Multi-domain] Cd Length: 158 Bit Score: 101.01 E-value: 2.82e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 130 NYRIEKKEAFRIVGVSQPLHNELEKnfeiVPQMWQKVALDGTLQKLIPMMDSQLQ-GVLGISIC-NNSEEWKYFI--SVS 205
Cdd:smart00871 1 EVRIVELPAFKVAGLRHRGPNEDEK----IPELWQRLIQWAKELGLLPVGNSGEPyGVYYDDPDdTPDGEFRYDAgvEVS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 206 STKSIDNTLEEYTVPAFTWAIFSGEGQCPQAIQELEKRIVTEWLPTSGYEYDN-GPDIELYLN----PDPQNAKFEVWIP 280
Cdd:smart00871 77 DEVEAPEGVETKTIPAGKYAVFTHKGGSYDEIQEAWEAIYGEWLPNSGYELRDaGPDFEVYLNdppdTDPEELVTEIYIP 156
|
..
gi 1689816792 281 VV 282
Cdd:smart00871 157 VK 158
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
25-101 |
5.40e-25 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 95.31 E-value: 5.40e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1689816792 25 EQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAPS 101
Cdd:smart00342 5 EDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
25-106 |
4.72e-23 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 95.23 E-value: 4.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 25 EQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAPSVIK 104
Cdd:COG2207 172 EELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
|
..
gi 1689816792 105 KR 106
Cdd:COG2207 252 KR 253
|
|
| Cass2 |
pfam14526 |
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, ... |
132-281 |
2.21e-21 |
|
Integron-associated effector binding protein; This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.
Pssm-ID: 434016 [Multi-domain] Cd Length: 149 Bit Score: 87.80 E-value: 2.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 132 RIEKKEAFRIVGVSQPLHNELEKNFEIVPQMWQKVALDGTLQKLIPMMDsqlqgVLGISiCNNSEEWKYF-----ISVSS 206
Cdd:pfam14526 1 EIVELPSFTVAGIRYEGPNEYEDHNKEIGKFWEEFNEDGRLPNIKKDDK-----SYGIY-VDYEDEENEFdyyagVEVPS 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1689816792 207 TKSIDNTLEEYTVPAFTWAIFSGEGQCPQAIQELEKRIVTEWLPTSGYEYDNGPDIELYLNPDPQNAKFEVWIPV 281
Cdd:pfam14526 75 FSELPEGLVVIEIPGGKYAVFTIEGDFPDAIAEAWTRIYGWLLPNSGYERAGGPDFEVYKENGDENMKIELYIPV 149
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
5-101 |
5.63e-19 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 79.97 E-value: 5.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 5 ERLNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSS 84
Cdd:PRK10219 5 KIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVS 84
|
90
....*....|....*..
gi 1689816792 85 PTAFNRAFKSIHGVAPS 101
Cdd:PRK10219 85 QQTFSRVFRRQFDRTPS 101
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
27-106 |
2.52e-18 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 77.63 E-value: 2.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 27 VAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVEL-QNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAPSVIKK 105
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 1689816792 106 R 106
Cdd:pfam12833 81 R 81
|
|
| GyrI-like |
pfam06445 |
GyrI-like small molecule binding domain; This family contains the small molecule binding ... |
130-281 |
6.32e-17 |
|
GyrI-like small molecule binding domain; This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.
Pssm-ID: 428947 Cd Length: 153 Bit Score: 75.91 E-value: 6.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 130 NYRIEKKEAFRIVGVSQPLHNelekNFEIVPQMWQKvaldgtLQKLIPMMDSQLQGVLGISICNNSEEW------KYFIS 203
Cdd:pfam06445 1 EVEIVELPAFRVAGLRHRGPY----NEEGIGALWEE------LCAWASENGLSPAPSPLIGVSYDDPEVtedeelRYDAG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 204 VSSTKSIDNT--LEEYTVPAFTWAIFSGEGQcPQAIQELEKRIVTEWLPTSGYEYDNGPDIELYLN----PDPQNAKFEV 277
Cdd:pfam06445 71 VAVPIPVEGPegVEELELPGGEYAVFRHKGP-YDDLQETYAKIYGEWLPESGYERRDGPSFEIYLNdpreVPEEELKTEI 149
|
....
gi 1689816792 278 WIPV 281
Cdd:pfam06445 150 YIPV 153
|
|
| SbmC |
COG3449 |
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair]; |
4-283 |
7.29e-17 |
|
DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair];
Pssm-ID: 442672 [Multi-domain] Cd Length: 286 Bit Score: 78.75 E-value: 7.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 4 IERLNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYS 83
Cdd:COG3449 11 QRRRILLVLIALHDDLDLLLLALLLAFAFHFFFFHRRRRFRALIGRRARLLLRRRLLAALALLLLSSSAIIAAAAAASGY 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 84 SPTAFNRAFKSIHGVAPSVIKKREITTLKAFPPISFKISikgAEEMNYRIEKKEAFRIVGVsqplhnELEKNFEIVPQMW 163
Cdd:COG3449 91 SSSASFRRFFRAFGGSSRSRRRRAKAKLLALPPLDPPRL---EPMMDVEIKELPPRRVAYL------RHRGPYEEIGEAF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 164 QKVALDGTLQKLIPmmdsQLQGVLGISICN----NSEEWKYF--ISVSSTKSIDNTLEEYTVPAFTWAIFSGEGQCPQaI 237
Cdd:COG3449 162 ERLIAWAKARGLLP----PDSRTIGIYYDDpditPPEKLRYDacVTVPEDVALPGGVEVKTIPGGRYAVLRHKGPYED-L 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1689816792 238 QELEKRIVTEWLPTSGYEYDNGPDIELYLNPDPQNA----KFEVWIPVVK 283
Cdd:COG3449 237 GAAWDWLYGEWLPASGYELRDRPCFEIYLNDPRETPegelITDIYLPLKP 286
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
5-106 |
6.21e-16 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 76.35 E-value: 6.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 5 ERLNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSS 84
Cdd:COG4977 210 PRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGS 289
|
90 100
....*....|....*....|..
gi 1689816792 85 PTAFNRAFKSIHGVAPSVIKKR 106
Cdd:COG4977 290 ASHFRRAFRRRFGVSPSAYRRR 311
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
2-116 |
8.91e-13 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 67.39 E-value: 8.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 2 EWIERlnkAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKkIIDVALKYG 81
Cdd:COG2169 84 DLVAR---ACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGLS-VTDAAYAAG 159
|
90 100 110
....*....|....*....|....*....|....*
gi 1689816792 82 YSSPTAFNRAFKSIHGVAPSVIKKREITTLKAFPP 116
Cdd:COG2169 160 FGSLSRFYEAFKKLLGMTPSAYRRGGAGAAIRFAP 194
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
7-100 |
3.12e-12 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 62.43 E-value: 3.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 7 LNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPT 86
Cdd:PRK11511 11 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQ 90
|
90
....*....|....
gi 1689816792 87 AFNRAFKSIHGVAP 100
Cdd:PRK11511 91 TLTRTFKNYFDVPP 104
|
|
| PRK15121 |
PRK15121 |
MDR efflux pump AcrAB transcriptional activator RobA; |
11-93 |
6.46e-12 |
|
MDR efflux pump AcrAB transcriptional activator RobA;
Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 64.64 E-value: 6.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 11 INYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNR 90
Cdd:PRK15121 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQQTFTR 90
|
...
gi 1689816792 91 AFK 93
Cdd:PRK15121 91 AFK 93
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
7-106 |
1.11e-11 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 63.90 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 7 LNKAINYIEENITKE-IEYEQVAKIACCSTYHFQRMFAYMADVpLSEYIRRRRMSLAAVELQN--DDKKIIDVALKYGYS 83
Cdd:PRK09685 199 FQKVVALIDQSIQEEiLRPEWIAGELGISVRSLYRLFAEQGLV-VAQYIRNRRLDRCADDLRPaaDDEKITSIAYKWGFS 277
|
90 100
....*....|....*....|...
gi 1689816792 84 SPTAFNRAFKSIHGVAPSVIKKR 106
Cdd:PRK09685 278 DSSHFSTAFKQRFGVSPGEYRRK 300
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
6-106 |
1.24e-07 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 51.89 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 6 RLNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSP 85
Cdd:PRK09393 219 RLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSE 298
|
90 100
....*....|....*....|.
gi 1689816792 86 TAFNRAFKSIHGVAPSVIKKR 106
Cdd:PRK09393 299 ESLRHHFRRRAATSPAAYRKR 319
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
6-107 |
3.30e-06 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 47.66 E-value: 3.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 6 RLNKAINYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSP 85
Cdd:PRK10572 184 RVREACQYISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQ 263
|
90 100
....*....|....*....|..
gi 1689816792 86 TAFNRAFKSIHGVAPSVIKKRE 107
Cdd:PRK10572 264 LYFSRVFKKCTGASPSEFRARC 285
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
5-104 |
6.99e-04 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 40.43 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 5 ERLNKAINYIEENITKEIEYEQVAKIACCS--TYHFQrMFAYMADVPlSEYIRRRRMSLAAVELQNDDKKIIDVALKYGY 82
Cdd:PRK13503 171 ARLNQLLAWLEDHFAEEVNWEALADQFSLSlrTLHRQ-LKQQTGLTP-QRYLNRLRLLKARHLLRHSDASVTDIAYRCGF 248
|
90 100
....*....|....*....|..
gi 1689816792 83 SSPTAFNRAFKSIHGVAPSVIK 104
Cdd:PRK13503 249 GDSNHFSTLFRREFSWSPRDIR 270
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
11-116 |
8.41e-04 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 40.19 E-value: 8.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1689816792 11 INYIEENITKEIEYEQVAKIACCSTYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNR 90
Cdd:PRK10371 197 LGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS 276
|
90 100
....*....|....*....|....*.
gi 1689816792 91 AFKSIHGVAPSVIKKREITTLKAFPP 116
Cdd:PRK10371 277 TFGKYVGMSPQQYRKLSQQRRQTFPG 302
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
69-101 |
3.56e-03 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 34.44 E-value: 3.56e-03
10 20 30
....*....|....*....|....*....|...
gi 1689816792 69 DDKKIIDVALKYGYsSPTAFNRAFKSIHGVAPS 101
Cdd:pfam00165 7 TNLTIADIADELGF-SRSYFSRLFKKYTGVTPS 38
|
|
| PRK15340 |
PRK15340 |
AraC family transcriptional regulator InvF; |
34-100 |
3.69e-03 |
|
AraC family transcriptional regulator InvF;
Pssm-ID: 185240 Cd Length: 216 Bit Score: 38.04 E-value: 3.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1689816792 34 STYHFQRMFAYMADVPLSEYIRRRRMSLAAVELQNDDKKIIDVALKYGYSSPTAFNRAFKSIHGVAP 100
Cdd:PRK15340 138 SYTHFRRLCSRALGGKAKSELRNWRMAQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSP 204
|
|
| |
