NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1694242760|gb|TPU39620|]
View 

NADH-quinone oxidoreductase subunit B [Acinetobacter baumannii]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
16-188 1.95e-102

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 294.19  E-value: 1.95e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  16 PLQDRQIVTDPLEEEVNKNVFMTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAeVIRASPRQA 95
Cdd:PRK06411    1 PLQKDEIVTMGLEEELNKGVVLTTLDDL----VNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  96 DLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLL 174
Cdd:PRK06411   76 DLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKL 155

                         170
                  ....*....|....
gi 1694242760 175 QDQIQLERRPLSAV 188
Cdd:PRK06411  156 QKKIRQSERERKRG 169
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
16-188 1.95e-102

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 294.19  E-value: 1.95e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  16 PLQDRQIVTDPLEEEVNKNVFMTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAeVIRASPRQA 95
Cdd:PRK06411    1 PLQKDEIVTMGLEEELNKGVVLTTLDDL----VNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  96 DLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLL 174
Cdd:PRK06411   76 DLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKL 155

                         170
                  ....*....|....
gi 1694242760 175 QDQIQLERRPLSAV 188
Cdd:PRK06411  156 QKKIRQSERERKRG 169
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 37-191 1.85e-100

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 287.85  E-value: 1.85e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  37 MTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLY 116
Cdd:COG0377     1 LTTLDKL----VNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLY 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1694242760 117 EQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERRPLSAVIGD 191
Cdd:COG0377    77 EQMPEPKWVIAMGACAISGGPYwDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYGE 152
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 34-181 3.11e-90

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 261.90  E-value: 3.11e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  34 NVFMTRLEDVLhtavNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQ 113
Cdd:TIGR01957   1 GVLLTTVDKLL----NWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALR 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1694242760 114 RLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLE 181
Cdd:TIGR01957  77 RLYDQMPEPKWVISMGACANSGGMFHTsYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
64-174 1.06e-34

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 120.00  E-value: 1.06e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  64 SCCYVEYATTLTGVHDL-----SRFGaEVIRASPR----QADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANS 134
Cdd:pfam01058   2 TGCTISLLALHPPLLDLldlisLRYG-IPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1694242760 135 GG---MYDIYSV-VQGVDKIIPVDVYVPGCPPRPEALIQALMLL 174
Cdd:pfam01058  81 GGipaAGNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
16-188 1.95e-102

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 294.19  E-value: 1.95e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  16 PLQDRQIVTDPLEEEVNKNVFMTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAeVIRASPRQA 95
Cdd:PRK06411    1 PLQKDEIVTMGLEEELNKGVVLTTLDDL----VNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGM-VFRASPRQA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  96 DLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLL 174
Cdd:PRK06411   76 DLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHYsYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKL 155

                         170
                  ....*....|....
gi 1694242760 175 QDQIQLERRPLSAV 188
Cdd:PRK06411  156 QKKIRQSERERKRG 169
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 37-191 1.85e-100

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 287.85  E-value: 1.85e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  37 MTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLY 116
Cdd:COG0377     1 LTTLDKL----VNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAEVPRASPRQADLMIVAGTVTKKMAPVLRRLY 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1694242760 117 EQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERRPLSAVIGD 191
Cdd:COG0377    77 EQMPEPKWVIAMGACAISGGPYwDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYGE 152
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 34-181 3.11e-90

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 261.90  E-value: 3.11e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  34 NVFMTRLEDVLhtavNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQ 113
Cdd:TIGR01957   1 GVLLTTVDKLL----NWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALR 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1694242760 114 RLYEQMLEPKWVISMGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLE 181
Cdd:TIGR01957  77 RLYDQMPEPKWVISMGACANSGGMFHTsYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
29-189 1.80e-87

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 274.35  E-value: 1.80e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  29 EEVNKNVFMTRLEDVLhtavNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKM 108
Cdd:PRK13292    1 ETIPENILLASLDDLI----NWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 109 APVIQRLYEQMLEPKWVISMGACANSGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERRPLSAV 188
Cdd:PRK13292   77 APSILRLYEQMAEPKWVISMGSCANSGGMYDVYSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRREERPARPV 156


                  .
gi 1694242760 189 I 189
Cdd:PRK13292  157 L 157
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 28-182 1.80e-71

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 215.54  E-value: 1.80e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  28 EEEVNKNVFMTRLEdvlhTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVK 107
Cdd:PRK14815   11 ESGVEGNVVVTTLD----AAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYK 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1694242760 108 MAPVIQRLYEQMLEPKWVISMGACANSGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLER 182
Cdd:PRK14815   87 MALAVRRIYDQMPEPKWVIAMGACASSGGMYRSYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTER 161
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
36-183 5.92e-69

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 209.30  E-value: 5.92e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  36 FMTRLEDVLHTAvnwgRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRL 115
Cdd:PRK14820   19 FATSLDSVIGLA----RKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLKQV 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 116 YEQMLEPKWVISMGACANSGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLE--RR 183
Cdd:PRK14820   95 YLQMAEPRWVVAVGACASSGGIFDTYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQELVKNEslRR 164
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
25-182 7.16e-68

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 209.46  E-value: 7.16e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  25 DPLEEEVNKN-VFMTRLEDVLhtavNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGT 103
Cdd:PRK14819    5 DPTQLELEKQgVLLTTVNRFY----NWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 104 CFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLER 182
Cdd:PRK14819   81 VTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFrDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQS 160
ndhK CHL00023
NADH dehydrogenase subunit K
 26-181 8.25e-68

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 208.02  E-value: 8.25e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  26 PLEEEVNKNVFMTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAeVIRASPRQADLMIVAGTCF 105
Cdd:CHL00023    8 LLDRTTSNSVISTTLNDL----SNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVT 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1694242760 106 VKMAPVIQRLYEQMLEPKWVISMGACANSGGMY--DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLE 181
Cdd:CHL00023   83 MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFstDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
32-190 8.19e-67

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 203.65  E-value: 8.19e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  32 NKNVFMTR-------LEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTC 104
Cdd:PRK14817    6 GLPVIATRreeaegfLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 105 FVKMAPVIQRLYEQMLEPKWVISMGACANSGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ----- 179
Cdd:PRK14817   86 NCKQAPILQRVYEQMADPKWVMAFGVCASSGGFYDNYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKIQnqshk 165

                         170
                  ....*....|..
gi 1694242760 180 -LERRPLSAVIG 190
Cdd:PRK14817  166 lIDRKPLPVIAG 177
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
34-182 1.75e-63

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 195.52  E-value: 1.75e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  34 NVFMTRLEDVlhtaVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQ 113
Cdd:PRK14816   25 NVFVGVLDDL----INWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLK 100

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 114 RLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLER 182
Cdd:PRK14816  101 RLYDQMADPKYVIAVGGCAVSGGPFkKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 170
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 44-183 1.73e-61

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 190.62  E-value: 1.73e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  44 LHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPK 123
Cdd:PRK14814   23 LESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPK 102

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1694242760 124 WVISMGACANSGGMYDIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQ---LERR 183
Cdd:PRK14814  103 FVISVGACASSGGMFHTYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKLKtqgLEAR 165
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 32-210 1.15e-59

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 185.86  E-value: 1.15e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  32 NKNVFMTRLEDVLhtavNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAeVIRASPRQADLMIVAGTCFVKMAPV 111
Cdd:PRK14813   10 NHNVLVTSVDNVL----NWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGI-FPRSSPRQSDLMIVAGTVTMKMAER 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 112 IQRLYEQMLEPKWVISMGACANSGGMY--DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERRPLSAVi 189
Cdd:PRK14813   85 VVRLYEQMPEPRYVLSMGSCSNCGGPYweHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQIGISRA- 163

                         170       180
                  ....*....|....*....|....*
gi 1694242760 190 gDDLQPV----YKPKMMPERDRKNA 210
Cdd:PRK14813  164 -DALKKLaeksVDPQQVIEQERKSA 187
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 48-182 2.86e-58

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 181.69  E-value: 2.86e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  48 VNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAeVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVIS 127
Cdd:PRK14818   25 INLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGA-IPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVIS 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1694242760 128 MGACANSGGMYDI-YSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLER 182
Cdd:PRK14818  104 MGSCSNCGGLFQLgYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIVRSEP 159
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
50-183 4.84e-49

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 156.87  E-value: 4.84e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  50 WGRKNSLWPFNFGT-SC--CYVEYATTLTGVHDLSRFGaevIR--ASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKW 124
Cdd:COG3260     1 KVLGRSLWIRHVDAgSCngCEIEILALLTPRYDLERFG---IKfvASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKV 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 125 VISMGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERR 183
Cdd:COG3260    78 VVAVGDCACSGGVFrDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKLK 137
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
64-174 1.06e-34

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 120.00  E-value: 1.06e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760  64 SCCYVEYATTLTGVHDL-----SRFGaEVIRASPR----QADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANS 134
Cdd:pfam01058   2 TGCTISLLALHPPLLDLldlisLRYG-IPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1694242760 135 GG---MYDIYSV-VQGVDKIIPVDVYVPGCPPRPEALIQALMLL 174
Cdd:pfam01058  81 GGipaAGNNPSYgVRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
125-174 1.74e-06

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 47.61  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1694242760 125 VISMGACANSGG------MYDIYSVVQGV--------------------------DKIIPVDVYVPGCPPRPEALIQALM 172
Cdd:COG1941    81 LVALGACAVTGGipalrnLYDLEELLERVygetpstnpqipgeelpelldrvrplSEVVKVDYELPGCPPDPDQILEVLT 160


                  ..
gi 1694242760 173 LL 174
Cdd:COG1941   161 AL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH